RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 KCPQ6ZWJ8 1503 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 ZMYM6O95789 1325 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 FAM205AQ6ZU69 1335 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 MARK3P27448 753 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 GUCY1A2P33402 732 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 CCT6AP40227 531 aaKnown RBP11.63□□□□□ -0.55
COL6A3-205ENST00000392004 STAT3P40763 770 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 ASIC1P78348 528 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 QRICH1Q2TAL8 776 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 DYMQ7RTS9 669 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 SLF1Q9BQI6 1058 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 TMEM260Q9NX78 707 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 PFKFB2O60825 505 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 UBE2HP62256 183 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 TOB2Q14106 344 aaPredicted RBP11.63□□□□□ -0.55
COL6A3-205ENST00000392004 ASPRV1Q53RT3 343 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 TRIM5Q9C035 493 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 LY9Q9HBG7 655 aa11.63□□□□□ -0.55
COL6A3-205ENST00000392004 ANKRD26Q9UPS8 1709 aa11.62□□□□□ -0.55
COL6A3-205ENST00000392004 CAP2P40123 477 aa11.62□□□□□ -0.55
COL6A3-205ENST00000392004 SPDYE2Q495Y8 402 aa11.62□□□□□ -0.55
COL6A3-205ENST00000392004 MB21D2Q8IYB1 491 aaPredicted RBP11.62□□□□□ -0.55
COL6A3-205ENST00000392004 ADGRF4Q8IZF3 695 aa11.62□□□□□ -0.55
COL6A3-205ENST00000392004 RNF169Q8NCN4 708 aa11.62□□□□□ -0.55
COL6A3-205ENST00000392004 AGBL1Q96MI9 1066 aa11.62□□□□□ -0.55
COL6A3-205ENST00000392004 ZSCAN16Q9H4T2 348 aaPredicted RBP11.62□□□□□ -0.55
COL6A3-205ENST00000392004 RIC1Q4ADV7 1423 aa11.62□□□□□ -0.55
COL6A3-205ENST00000392004 GAS7O60861 476 aa11.62□□□□□ -0.55
COL6A3-205ENST00000392004 PLA2G4DQ86XP0 818 aa11.62□□□□□ -0.55
COL6A3-205ENST00000392004 CLIC6Q96NY7 704 aa11.62□□□□□ -0.55
COL6A3-205ENST00000392004 CEP290O15078 2479 aa11.62□□□□□ -0.55
COL6A3-205ENST00000392004 NHSL1Q5SYE7 1610 aa11.62□□□□□ -0.55
COL6A3-205ENST00000392004 ZSCAN20P17040 1043 aaPredicted RBP11.62□□□□□ -0.55
COL6A3-205ENST00000392004 GTF2F1P35269 517 aaKnown RBP eCLIP11.62□□□□□ -0.55
COL6A3-205ENST00000392004 STX17P56962 302 aa11.62□□□□□ -0.55
COL6A3-205ENST00000392004 RRAGBQ5VZM2 374 aa11.62□□□□□ -0.55
COL6A3-205ENST00000392004 CYP4F22Q6NT55 531 aa11.62□□□□□ -0.55
COL6A3-205ENST00000392004 NSUN7Q8NE18 718 aaKnown RBP11.62□□□□□ -0.55
COL6A3-205ENST00000392004 ERMNQ8TAM6 284 aa11.62□□□□□ -0.55
COL6A3-205ENST00000392004 ZNF512BQ96KM6 892 aaPredicted RBP11.62□□□□□ -0.55
COL6A3-205ENST00000392004 TRERF1Q96PN7 1200 aa11.62□□□□□ -0.55
COL6A3-205ENST00000392004 LMO7Q8WWI1 1683 aa11.61□□□□□ -0.55
COL6A3-205ENST00000392004 IRF6O14896 467 aa11.61□□□□□ -0.55
COL6A3-205ENST00000392004 SERPINC1P01008 464 aa11.61□□□□□ -0.55
COL6A3-205ENST00000392004 PPP4CP60510 307 aa11.61□□□□□ -0.55
COL6A3-205ENST00000392004 SNAPC2Q13487 334 aa11.61□□□□□ -0.55
COL6A3-205ENST00000392004 COL9A3Q14050 684 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-205ENST00000392004 CALCRLQ16602 461 aa11.61□□□□□ -0.55
COL6A3-205ENST00000392004 TSR1Q2NL82 804 aaKnown RBP11.61□□□□□ -0.55
COL6A3-205ENST00000392004 PRPF38AQ8NAV1 312 aaKnown RBP11.61□□□□□ -0.55
COL6A3-205ENST00000392004 TBCKQ8TEA7 893 aa11.61□□□□□ -0.55
COL6A3-205ENST00000392004 HOXC10Q9NYD6 342 aa11.61□□□□□ -0.55
COL6A3-205ENST00000392004 DLG5Q8TDM6 1919 aa11.61□□□□□ -0.55
COL6A3-205ENST00000392004 TBCAO75347 108 aaKnown RBP11.61□□□□□ -0.55
COL6A3-205ENST00000392004 DDAH1O94760 285 aa11.61□□□□□ -0.55
COL6A3-205ENST00000392004 RHBDL3P58872 404 aa11.61□□□□□ -0.55
COL6A3-205ENST00000392004 RNF207Q6ZRF8 634 aa11.61□□□□□ -0.55
COL6A3-205ENST00000392004 SNX29Q8TEQ0 813 aa11.61□□□□□ -0.55
COL6A3-205ENST00000392004 RMDN3Q96TC7 470 aa11.61□□□□□ -0.55
COL6A3-205ENST00000392004 LRWD1Q9UFC0 647 aa11.61□□□□□ -0.55
COL6A3-205ENST00000392004 PNMA3Q9UL41 463 aa11.61□□□□□ -0.55
COL6A3-205ENST00000392004 TRPC6Q9Y210 931 aa11.61□□□□□ -0.55
COL6A3-205ENST00000392004 CCDC169A6NNP5 214 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 CCDC192P0DO97 292 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 ANTXR2P58335 489 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 VGLL4Q14135 290 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 COG2Q14746 738 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 RCSD1Q6JBY9 416 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 GPIHBP1Q8IV16 184 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 USP28Q96RU2 1077 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 LZTS2Q9BRK4 669 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 AZI2Q9H6S1 392 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.6□□□□□ -0.557e-8■■■■■ 186.3
COL6A3-205ENST00000392004 STIM1Q13586 685 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 C16orf86Q6ZW13 317 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 ZNF710Q8N1W2 664 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 SRBD1Q8N5C6 995 aaKnown RBP11.6□□□□□ -0.55
COL6A3-205ENST00000392004 OXER1Q8TDS5 423 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 GJA10Q969M2 543 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 TCRBV5S4A2TA0A5A2 114 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 MEIS1O00470 390 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 RIOK3O14730 519 aaKnown RBP11.6□□□□□ -0.55
COL6A3-205ENST00000392004 PGK2P07205 417 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 KCNA3P22001 575 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 BRD2P25440 801 aaKnown RBP11.6□□□□□ -0.55
COL6A3-205ENST00000392004 HDLBPQ00341 1268 aaKnown RBP11.6□□□□□ -0.55
COL6A3-205ENST00000392004 LDHDQ86WU2 507 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 SPTLC3Q9NUV7 552 aa11.6□□□□□ -0.55
COL6A3-205ENST00000392004 MAGEC2Q9UBF1 373 aaPredicted RBP11.6□□□□□ -0.55
COL6A3-205ENST00000392004 PARP4Q9UKK3 1724 aaKnown RBP11.6□□□□□ -0.55
COL6A3-205ENST00000392004 LIFRP42702 1097 aa11.59□□□□□ -0.55
COL6A3-205ENST00000392004 BRDTQ58F21 947 aaPredicted RBP11.59□□□□□ -0.55
COL6A3-205ENST00000392004 SCYL3Q8IZE3 742 aa11.59□□□□□ -0.55
COL6A3-205ENST00000392004 POLR2DO15514 142 aaKnown RBP11.59□□□□□ -0.55
COL6A3-205ENST00000392004 NEMFO60524 1076 aa11.59□□□□□ -0.55
COL6A3-205ENST00000392004 PCP11498 1178 aaKnown RBP11.59□□□□□ -0.55
COL6A3-205ENST00000392004 MAP3K11Q16584 847 aa11.59□□□□□ -0.55
COL6A3-205ENST00000392004 FBXO18Q8NFZ0 1043 aa11.59□□□□□ -0.55
COL6A3-205ENST00000392004 PCDHA12Q9UN75 941 aa11.59□□□□□ -0.55
COL6A3-205ENST00000392004 CTNND1O60716 968 aaKnown RBP11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms