RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 VPS54Q9P1Q0 977 aa15.51■□□□□ 0.07
SDC1-202ENST00000381150 ADD3Q9UEY8 706 aaKnown RBP15.51■□□□□ 0.07
SDC1-202ENST00000381150 DUSP10Q9Y6W6 482 aa15.51■□□□□ 0.07
SDC1-202ENST00000381150 CNTNAP4Q9C0A0 1308 aa15.51■□□□□ 0.07
SDC1-202ENST00000381150 IFNAR1P17181 557 aa15.51■□□□□ 0.07
SDC1-202ENST00000381150 USP8P40818 1118 aa15.51■□□□□ 0.07
SDC1-202ENST00000381150 CCDC181Q5TID7 509 aa15.51■□□□□ 0.07
SDC1-202ENST00000381150 TBC1D9BQ66K14 1250 aa15.51■□□□□ 0.07
SDC1-202ENST00000381150 SMCR8Q8TEV9 937 aaPredicted RBP15.51■□□□□ 0.07
SDC1-202ENST00000381150 CELF1Q92879 486 aaKnown RBP15.51■□□□□ 0.07
SDC1-202ENST00000381150 FAM84BQ96KN1 310 aaPredicted RBP15.51■□□□□ 0.07
SDC1-202ENST00000381150 CTAGE1Q96RT6 745 aa15.51■□□□□ 0.07
SDC1-202ENST00000381150 ANAPC4Q9UJX5 808 aa15.51■□□□□ 0.07
SDC1-202ENST00000381150 FMNL1O95466 1100 aaPredicted RBP15.5■□□□□ 0.07
SDC1-202ENST00000381150 IFT81Q8WYA0 676 aa15.5■□□□□ 0.07
SDC1-202ENST00000381150 NACAP1Q9BZK3 213 aa15.5■□□□□ 0.07
SDC1-202ENST00000381150 CYP7A1P22680 504 aa15.5■□□□□ 0.07
SDC1-202ENST00000381150 TOB1P50616 345 aaPredicted RBP15.5■□□□□ 0.07
SDC1-202ENST00000381150 CD248Q9HCU0 757 aa15.5■□□□□ 0.07
SDC1-202ENST00000381150 NDUFA10O95299 355 aa15.49■□□□□ 0.07
SDC1-202ENST00000381150 ANKRD13CQ8N6S4 541 aa15.49■□□□□ 0.07
SDC1-202ENST00000381150 HDAC7Q8WUI4 952 aa15.49■□□□□ 0.07
SDC1-202ENST00000381150 FAM237AA0A1B0GTK4 181 aa15.49■□□□□ 0.07
SDC1-202ENST00000381150 TRIM21P19474 475 aaKnown RBP15.49■□□□□ 0.07
SDC1-202ENST00000381150 MDM2Q00987 491 aaPredicted RBP15.49■□□□□ 0.07
SDC1-202ENST00000381150 ACTN3Q08043 901 aaPredicted RBP15.49■□□□□ 0.07
SDC1-202ENST00000381150 CCDC96Q2M329 555 aa15.49■□□□□ 0.07
SDC1-202ENST00000381150 SDR42E1Q8WUS8 393 aa15.49■□□□□ 0.07
SDC1-202ENST00000381150 SYMPKQ92797 1274 aaKnown RBP15.49■□□□□ 0.07
SDC1-202ENST00000381150 EHD2Q9NZN4 543 aa15.49■□□□□ 0.07
SDC1-202ENST00000381150 LUC7L2Q9Y383 392 aaKnown RBP15.49■□□□□ 0.07
SDC1-202ENST00000381150 COL24A1Q17RW2 1714 aa15.49■□□□□ 0.07
SDC1-202ENST00000381150 HPDP32754 393 aaPredicted RBP15.49■□□□□ 0.07
SDC1-202ENST00000381150 SEC23AQ15436 765 aa15.49■□□□□ 0.07
SDC1-202ENST00000381150 FBXO33Q7Z6M2 555 aa15.49■□□□□ 0.07
SDC1-202ENST00000381150 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.49■□□□□ 0.07
SDC1-202ENST00000381150 FBXO2Q9UK22 296 aaPredicted RBP15.49■□□□□ 0.07
SDC1-202ENST00000381150 MTMR7Q9Y216 660 aa15.49■□□□□ 0.07
SDC1-202ENST00000381150 MYO1BO43795 1136 aa15.48■□□□□ 0.07
SDC1-202ENST00000381150 BAZ2AQ9UIF9 1905 aaKnown RBP15.48■□□□□ 0.07
SDC1-202ENST00000381150 MYH2Q9UKX2 1941 aa15.48■□□□□ 0.07
SDC1-202ENST00000381150 TRIM49BA6NDI0 452 aa15.48■□□□□ 0.07
SDC1-202ENST00000381150 PTPREP23469 700 aa15.48■□□□□ 0.07
SDC1-202ENST00000381150 ARHGAP25P42331 645 aa15.48■□□□□ 0.07
SDC1-202ENST00000381150 VPS72Q15906 364 aa15.48■□□□□ 0.07
SDC1-202ENST00000381150 ABCF2Q9UG63 623 aa15.48■□□□□ 0.07
SDC1-202ENST00000381150 A0A087X0B3 334 aa15.48■□□□□ 0.07
SDC1-202ENST00000381150 ERICH2A1L162 156 aa15.48■□□□□ 0.07
SDC1-202ENST00000381150 RTN1Q16799 776 aa15.48■□□□□ 0.07
SDC1-202ENST00000381150 RC3H1Q5TC82 1133 aaKnown RBP15.48■□□□□ 0.07
SDC1-202ENST00000381150 PAGE5Q96GU1 130 aa15.48■□□□□ 0.07
SDC1-202ENST00000381150 MAGEB6P1A0A0J9YX57 407 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 TTC26A0AVF1 554 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 KCNJ18B7U540 433 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 RPS6KA5O75582 802 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 KRT14P02533 472 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 MCM3P25205 808 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 KLRK1P26718 216 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 PDE6BP35913 854 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 GUCY2FP51841 1108 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 COPB1P53618 953 aaKnown RBP15.47■□□□□ 0.07
SDC1-202ENST00000381150 KCNJ12Q14500 433 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 WTAPQ15007 396 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 KANK3Q6NY19 840 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 KIRREL3Q8IZU9 778 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 SCLT1Q96NL6 688 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 ZNHIT6Q9NWK9 470 aaKnown RBP15.47■□□□□ 0.07
SDC1-202ENST00000381150 BCCIPQ9P287 314 aaKnown RBP eCLIP15.47■□□□□ 0.07
SDC1-202ENST00000381150 NARFQ9UHQ1 456 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 SUFUQ9UMX1 484 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 TRIM75PA6NK02 468 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 MINDY4BA8MYZ0 360 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 FGRP09769 529 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 ERCC5P28715 1186 aaPredicted RBP15.47■□□□□ 0.07
SDC1-202ENST00000381150 RCAN1P53805 252 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 DPYDQ12882 1025 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 ENOX2Q16206 610 aaKnown RBP15.47■□□□□ 0.07
SDC1-202ENST00000381150 RILPL1Q5EBL4 403 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 AMIGO3Q86WK7 504 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 CRACR2BQ8N4Y2 399 aaPredicted RBP15.47■□□□□ 0.07
SDC1-202ENST00000381150 ARL8AQ96BM9 186 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 UBAC1Q9BSL1 405 aa15.47■□□□□ 0.07
SDC1-202ENST00000381150 ESYT3A0FGR9 886 aa15.46■□□□□ 0.07
SDC1-202ENST00000381150 BACH1O14867 736 aa15.46■□□□□ 0.07
SDC1-202ENST00000381150 PRPF6O94906 941 aaKnown RBP15.46■□□□□ 0.07
SDC1-202ENST00000381150 BICDL1Q6ZP65 573 aa15.46■□□□□ 0.07
SDC1-202ENST00000381150 NELFBQ8WX92 580 aa15.46■□□□□ 0.07
SDC1-202ENST00000381150 GDAQ9Y2T3 454 aa15.46■□□□□ 0.07
SDC1-202ENST00000381150 BTAF1O14981 1849 aa15.46■□□□□ 0.07
SDC1-202ENST00000381150 ACTN4O43707 911 aaKnown RBP15.46■□□□□ 0.07
SDC1-202ENST00000381150 KRT86O43790 486 aa15.46■□□□□ 0.07
SDC1-202ENST00000381150 RPS6KA4O75676 772 aa15.46■□□□□ 0.07
SDC1-202ENST00000381150 MMP1P03956 469 aa15.46■□□□□ 0.07
SDC1-202ENST00000381150 TUBBP07437 444 aa15.46■□□□□ 0.07
SDC1-202ENST00000381150 CDR1P51861 262 aa15.46■□□□□ 0.07
SDC1-202ENST00000381150 DYNLL1P63167 89 aaKnown RBP15.46■□□□□ 0.07
SDC1-202ENST00000381150 GUCY1A3Q02108 690 aa15.46■□□□□ 0.07
SDC1-202ENST00000381150 PPFIA1Q13136 1202 aa15.46■□□□□ 0.07
SDC1-202ENST00000381150 TUBB2AQ13885 445 aa15.46■□□□□ 0.07
SDC1-202ENST00000381150 TMTC2Q8N394 836 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms