RNA–Protein interactions for RNA: ENST00000379826.4

SMAD9-202, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SMAD9, Length 5,592 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-202ENST00000379826 PPM1EQ8WY54 764 aa12.68□□□□□ -0.38
SMAD9-202ENST00000379826 EYA3Q99504 573 aa12.68□□□□□ -0.38
SMAD9-202ENST00000379826 VEZTQ9HBM0 779 aa12.68□□□□□ -0.38
SMAD9-202ENST00000379826 SLC39A2Q9NP94 309 aa12.68□□□□□ -0.38
SMAD9-202ENST00000379826 NLRC4Q9NPP4 1024 aa12.68□□□□□ -0.38
SMAD9-202ENST00000379826 LRWD1Q9UFC0 647 aa12.68□□□□□ -0.38
SMAD9-202ENST00000379826 XRN1Q8IZH2 1706 aaKnown RBP12.68□□□□□ -0.38
SMAD9-202ENST00000379826 SMIM23A6NLE4 172 aa12.68□□□□□ -0.38
SMAD9-202ENST00000379826 NDUFAB1O14561 156 aa12.68□□□□□ -0.38
SMAD9-202ENST00000379826 IGDCC4Q8TDY8 1250 aa12.68□□□□□ -0.38
SMAD9-202ENST00000379826 AGLP35573 1532 aa12.68□□□□□ -0.38
SMAD9-202ENST00000379826 TBC1D8O95759 1140 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 VSNL1P62760 191 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 TFAP4Q01664 338 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 RNF26Q9BY78 433 aaPredicted RBP12.67□□□□□ -0.38
SMAD9-202ENST00000379826 TFR2Q9UP52 801 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 SAMM50Q9Y512 469 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 MOCS3O95396 460 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 RAPGEF1Q13905 1077 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 GIGYF2Q6Y7W6 1299 aaKnown RBP12.67□□□□□ -0.38
SMAD9-202ENST00000379826 NIM1KQ8IY84 436 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 CNBD1Q8NA66 436 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 NLRP3Q96P20 1036 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 NUP58Q9BVL2 599 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 HAUS4Q9H6D7 363 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 ARID4AP29374 1257 aaPredicted RBP12.67□□□□□ -0.38
SMAD9-202ENST00000379826 UBLCP1Q8WVY7 318 aaPredicted RBP12.67□□□□□ -0.38
SMAD9-202ENST00000379826 SALL1Q9NSC2 1324 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 H7C1D1 291 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 TRAF5O00463 557 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 CNNM4Q6P4Q7 775 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 CNOT6LQ96LI5 555 aaKnown RBP12.67□□□□□ -0.38
SMAD9-202ENST00000379826 NHEJ1Q9H9Q4 299 aaPredicted RBP12.67□□□□□ -0.38
SMAD9-202ENST00000379826 FBXO3Q9UK99 471 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 F8W031 263 aaPredicted RBP12.67□□□□□ -0.38
SMAD9-202ENST00000379826 BAG3O95817 575 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 KCNJ6P48051 423 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 NR1I3Q14994 352 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 PTPAQ15257 358 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 TUBGCP2Q9BSJ2 902 aa12.67□□□□□ -0.38
SMAD9-202ENST00000379826 FMN2Q9NZ56 1722 aa12.66□□□□□ -0.38
SMAD9-202ENST00000379826 RBM17Q96I25 401 aaKnown RBP12.66□□□□□ -0.38
SMAD9-202ENST00000379826 SPAG5Q96R06 1193 aa12.66□□□□□ -0.38
SMAD9-202ENST00000379826 MED4Q9NPJ6 270 aa12.66□□□□□ -0.38
SMAD9-202ENST00000379826 MAGEA1P43355 309 aa12.66□□□□□ -0.38
SMAD9-202ENST00000379826 NELFCDQ8IXH7 590 aa12.66□□□□□ -0.38
SMAD9-202ENST00000379826 CAPS2Q9BXY5 557 aa12.66□□□□□ -0.38
SMAD9-202ENST00000379826 WDR19Q8NEZ3 1342 aa12.66□□□□□ -0.38
SMAD9-202ENST00000379826 SLIT1O75093 1534 aa12.66□□□□□ -0.38
SMAD9-202ENST00000379826 INPP5BP32019 993 aa12.66□□□□□ -0.38
SMAD9-202ENST00000379826 NOX5Q96PH1 765 aa12.66□□□□□ -0.38
SMAD9-202ENST00000379826 GNAQP50148 359 aa12.66□□□□□ -0.38
SMAD9-202ENST00000379826 TRIM65Q6PJ69 517 aa12.66□□□□□ -0.38
SMAD9-202ENST00000379826 CCDC125Q86Z20 511 aa12.66□□□□□ -0.38
SMAD9-202ENST00000379826 STK36Q9NRP7 1315 aa12.66□□□□□ -0.38
SMAD9-202ENST00000379826 A0A0U1RQJ8 604 aa12.65□□□□□ -0.38
SMAD9-202ENST00000379826 SASH3O75995 380 aa12.65□□□□□ -0.38
SMAD9-202ENST00000379826 MB21D1Q8N884 522 aa12.65□□□□□ -0.38
SMAD9-202ENST00000379826 STAG1Q8WVM7 1258 aa12.65□□□□□ -0.38
SMAD9-202ENST00000379826 PNKPQ96T60 521 aa12.65□□□□□ -0.38
SMAD9-202ENST00000379826 EPB41L4AQ9HCS5 686 aaPredicted RBP12.65□□□□□ -0.38
SMAD9-202ENST00000379826 A0A1B0GTH6 734 aa12.65□□□□□ -0.38
SMAD9-202ENST00000379826 GSG1L2A8MUP6 293 aa12.65□□□□□ -0.38
SMAD9-202ENST00000379826 GGCXP38435 758 aa12.65□□□□□ -0.38
SMAD9-202ENST00000379826 FXR1P51114 621 aaKnown RBP eCLIP12.65□□□□□ -0.38
SMAD9-202ENST00000379826 PPP2R5BQ15173 497 aa12.65□□□□□ -0.38
SMAD9-202ENST00000379826 KRT79Q5XKE5 535 aa12.65□□□□□ -0.38
SMAD9-202ENST00000379826 TRMT1LQ7Z2T5 733 aaKnown RBP12.65□□□□□ -0.38
SMAD9-202ENST00000379826 ATP1A1P05023 1023 aaKnown RBP12.65□□□□□ -0.38
SMAD9-202ENST00000379826 CA8P35219 290 aa12.65□□□□□ -0.38
SMAD9-202ENST00000379826 DYDC1Q8WWB3 177 aa12.65□□□□□ -0.38
SMAD9-202ENST00000379826 GJD4Q96KN9 370 aaPredicted RBP12.65□□□□□ -0.38
SMAD9-202ENST00000379826 GPCPD1Q9NPB8 672 aa12.65□□□□□ -0.38
SMAD9-202ENST00000379826 PRCPP42785 496 aa12.65□□□□□ -0.38
SMAD9-202ENST00000379826 DNM2P50570 870 aa12.65□□□□□ -0.38
SMAD9-202ENST00000379826 RASSF7Q02833 373 aa12.65□□□□□ -0.38
SMAD9-202ENST00000379826 BCAS4Q8TDM0 211 aa12.65□□□□□ -0.38
SMAD9-202ENST00000379826 PIGBQ92521 554 aa12.65□□□□□ -0.38
SMAD9-202ENST00000379826 PRPF3O43395 683 aaKnown RBP12.64□□□□□ -0.39
SMAD9-202ENST00000379826 DCAF17Q5H9S7 520 aaPredicted RBP12.64□□□□□ -0.39
SMAD9-202ENST00000379826 VPS36Q86VN1 386 aa12.64□□□□□ -0.39
SMAD9-202ENST00000379826 SLF2Q8IX21 1173 aa12.64□□□□□ -0.39
SMAD9-202ENST00000379826 ZC3H12CQ9C0D7 883 aaKnown RBP12.64□□□□□ -0.39
SMAD9-202ENST00000379826 PP2D1A8MPX8 630 aa12.64□□□□□ -0.39
SMAD9-202ENST00000379826 TMEM110-MUSTN1A8MSY1 372 aa12.64□□□□□ -0.39
SMAD9-202ENST00000379826 ZNF185O15231 689 aa12.64□□□□□ -0.39
SMAD9-202ENST00000379826 ACTN4O43707 911 aaKnown RBP12.64□□□□□ -0.39
SMAD9-202ENST00000379826 TFRCP02786 760 aaKnown RBP12.64□□□□□ -0.39
SMAD9-202ENST00000379826 HIBADHP31937 336 aaKnown RBP12.64□□□□□ -0.39
SMAD9-202ENST00000379826 ZNF579Q8NAF0 562 aaKnown RBP12.64□□□□□ -0.39
SMAD9-202ENST00000379826 DDAH1O94760 285 aa12.64□□□□□ -0.39
SMAD9-202ENST00000379826 CD44P16070 742 aaKnown RBP12.64□□□□□ -0.39
SMAD9-202ENST00000379826 CCDC93Q567U6 631 aa12.64□□□□□ -0.39
SMAD9-202ENST00000379826 IFT20Q8IY31 132 aa12.64□□□□□ -0.39
SMAD9-202ENST00000379826 TGFBRAP1Q8WUH2 860 aa12.64□□□□□ -0.39
SMAD9-202ENST00000379826 SELENOSQ9BQE4 189 aa12.64□□□□□ -0.39
SMAD9-202ENST00000379826 LDHBP07195 334 aaKnown RBP12.64□□□□□ -0.39
SMAD9-202ENST00000379826 LONP1P36776 959 aaKnown RBP12.64□□□□□ -0.39
SMAD9-202ENST00000379826 MAPKAPK5Q8IW41 473 aa12.64□□□□□ -0.39
SMAD9-202ENST00000379826 SUPT20HQ8NEM7 779 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms