RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 BMP6P22004 513 aa12.22□□□□□ -0.45
NEDD9-201ENST00000379433 TPM4P67936 248 aa12.22□□□□□ -0.45
NEDD9-201ENST00000379433 TPD52L1Q16890 204 aaPredicted RBP12.22□□□□□ -0.45
NEDD9-201ENST00000379433 SRPRBQ9Y5M8 271 aaKnown RBP12.22□□□□□ -0.45
NEDD9-201ENST00000379433 PCP11498 1178 aaKnown RBP12.22□□□□□ -0.45
NEDD9-201ENST00000379433 PAX3P23760 479 aa12.22□□□□□ -0.45
NEDD9-201ENST00000379433 ZKSCAN8Q15776 578 aaPredicted RBP12.22□□□□□ -0.45
NEDD9-201ENST00000379433 PAIP2Q9BPZ3 127 aaKnown RBP12.22□□□□□ -0.45
NEDD9-201ENST00000379433 DOCK2Q92608 1830 aa12.22□□□□□ -0.45
NEDD9-201ENST00000379433 DUOX1Q9NRD9 1551 aa12.22□□□□□ -0.45
NEDD9-201ENST00000379433 TXKP42681 527 aa12.21□□□□□ -0.45
NEDD9-201ENST00000379433 TNNT3P45378 269 aaPredicted RBP12.21□□□□□ -0.45
NEDD9-201ENST00000379433 UBASH3AP57075 661 aa12.21□□□□□ -0.45
NEDD9-201ENST00000379433 TRMT1LQ7Z2T5 733 aaKnown RBP12.21□□□□□ -0.45
NEDD9-201ENST00000379433 CCDC94Q9BW85 323 aaPredicted RBP12.21□□□□□ -0.45
NEDD9-201ENST00000379433 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.21□□□□□ -0.45
NEDD9-201ENST00000379433 MAN1B1Q9UKM7 699 aa12.21□□□□□ -0.45
NEDD9-201ENST00000379433 HPSEQ9Y251 543 aa12.21□□□□□ -0.45
NEDD9-201ENST00000379433 RREB1Q92766 1687 aa12.21□□□□□ -0.45
NEDD9-201ENST00000379433 TMEM232C9JQI7 657 aa12.21□□□□□ -0.45
NEDD9-201ENST00000379433 TECP42680 631 aa12.21□□□□□ -0.45
NEDD9-201ENST00000379433 FMR1Q06787 632 aaKnown RBP eCLIP12.21□□□□□ -0.45
NEDD9-201ENST00000379433 SEPT2Q15019 361 aa12.21□□□□□ -0.45
NEDD9-201ENST00000379433 GPIHBP1Q8IV16 184 aa12.21□□□□□ -0.45
NEDD9-201ENST00000379433 PRMT6Q96LA8 375 aaPredicted RBP12.21□□□□□ -0.45
NEDD9-201ENST00000379433 SAMSN1Q9NSI8 373 aaKnown RBP12.21□□□□□ -0.45
NEDD9-201ENST00000379433 RGS17Q9UGC6 210 aaPredicted RBP12.21□□□□□ -0.45
NEDD9-201ENST00000379433 HOOK1Q9UJC3 728 aaKnown RBP12.21□□□□□ -0.45
NEDD9-201ENST00000379433 NFE2L3Q9Y4A8 694 aa12.21□□□□□ -0.45
NEDD9-201ENST00000379433 ARAP2Q8WZ64 1704 aa12.21□□□□□ -0.46
NEDD9-201ENST00000379433 RGL2O15211 777 aa12.21□□□□□ -0.46
NEDD9-201ENST00000379433 TOP1P11387 765 aaKnown RBP12.21□□□□□ -0.46
NEDD9-201ENST00000379433 SKILP12757 684 aa12.21□□□□□ -0.46
NEDD9-201ENST00000379433 GRM4Q14833 912 aa12.21□□□□□ -0.46
NEDD9-201ENST00000379433 PPP2R5BQ15173 497 aa12.21□□□□□ -0.46
NEDD9-201ENST00000379433 HS1BP3Q53T59 392 aa12.21□□□□□ -0.46
NEDD9-201ENST00000379433 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.21□□□□□ -0.46
NEDD9-201ENST00000379433 CDAN1Q8IWY9 1227 aa12.21□□□□□ -0.46
NEDD9-201ENST00000379433 NEDD1Q8NHV4 660 aa12.21□□□□□ -0.46
NEDD9-201ENST00000379433 BORCS6Q96GS4 357 aa12.21□□□□□ -0.46
NEDD9-201ENST00000379433 OSBPL5Q9H0X9 879 aaPredicted RBP12.21□□□□□ -0.46
NEDD9-201ENST00000379433 MTMR4Q9NYA4 1195 aa12.21□□□□□ -0.46
NEDD9-201ENST00000379433 PCDHA4Q9UN74 947 aa12.21□□□□□ -0.46
NEDD9-201ENST00000379433 USP17L10C9JJH3 530 aa12.2□□□□□ -0.46
NEDD9-201ENST00000379433 SSBP05455 408 aaKnown RBP eCLIP12.2□□□□□ -0.46
NEDD9-201ENST00000379433 UBA7P41226 1012 aa12.2□□□□□ -0.46
NEDD9-201ENST00000379433 FANCCQ00597 558 aa12.2□□□□□ -0.46
NEDD9-201ENST00000379433 ZRSR2Q15696 482 aaKnown RBP12.2□□□□□ -0.46
NEDD9-201ENST00000379433 IL17AQ16552 155 aa12.2□□□□□ -0.46
NEDD9-201ENST00000379433 PLA2G4DQ86XP0 818 aa12.2□□□□□ -0.46
NEDD9-201ENST00000379433 MSL3Q8N5Y2 521 aaKnown RBP12.2□□□□□ -0.46
NEDD9-201ENST00000379433 ACRBPQ8NEB7 543 aa12.2□□□□□ -0.46
NEDD9-201ENST00000379433 PDS5AQ29RF7 1337 aaKnown RBP12.2□□□□□ -0.46
NEDD9-201ENST00000379433 PDHBP11177 359 aa12.2□□□□□ -0.46
NEDD9-201ENST00000379433 NAP1L1P55209 391 aaKnown RBP12.2□□□□□ -0.46
NEDD9-201ENST00000379433 CERKLQ49MI3 558 aaPredicted RBP12.2□□□□□ -0.46
NEDD9-201ENST00000379433 MICAL1Q8TDZ2 1067 aa12.2□□□□□ -0.46
NEDD9-201ENST00000379433 TBCKQ8TEA7 893 aa12.2□□□□□ -0.46
NEDD9-201ENST00000379433 PCDHA6Q9UN73 950 aa12.2□□□□□ -0.46
NEDD9-201ENST00000379433 PCDHA8Q9Y5H6 950 aa12.2□□□□□ -0.46
NEDD9-201ENST00000379433 UQCRHLA0A096LP55 91 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 UQCRHP07919 91 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 STAT6P42226 847 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 SLC1A4P43007 532 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 ANKRD23Q86SG2 305 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 FLAD1Q8NFF5 587 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 CSRNP1Q96S65 589 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 MYCBPQ99417 103 aaPredicted RBP12.19□□□□□ -0.46
NEDD9-201ENST00000379433 SUGT1Q9Y2Z0 365 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 MYH6P13533 1939 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 USP27XA6NNY8 438 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 USP17L15C9J2P7 530 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 USP17L13C9JLJ4 530 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 USP17L11C9JVI0 530 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 USP17L18D6R9N7 530 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 USP17L22D6RA61 530 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 USP17L17D6RBQ6 530 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 USP17L19D6RCP7 530 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 USP17L20D6RJB6 530 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 OFD1O75665 1012 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 CCDC172P0C7W6 258 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 CALML3P27482 149 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 GNAQP50148 359 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 MYL5Q02045 173 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 RAD51AP2Q09MP3 1159 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 USP17L24Q0WX57 530 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 CUL4BQ13620 913 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 USP17L6PQ6QN14 398 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 DTHD1Q6ZMT9 781 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 CASZ1Q86V15 1759 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 UBR3Q6ZT12 1888 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 STXBP3O00186 592 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 CCT6AP40227 531 aaKnown RBP12.19□□□□□ -0.46
NEDD9-201ENST00000379433 PODNQ7Z5L7 613 aa12.19□□□□□ -0.46
NEDD9-201ENST00000379433 SHTN1A0MZ66 631 aa12.18□□□□□ -0.46
NEDD9-201ENST00000379433 PALM3A6NDB9 673 aaPredicted RBP12.18□□□□□ -0.46
NEDD9-201ENST00000379433 EEF2P13639 858 aaKnown RBP12.18□□□□□ -0.46
NEDD9-201ENST00000379433 DPEP1P16444 411 aa12.18□□□□□ -0.46
NEDD9-201ENST00000379433 SHMT1P34896 483 aa12.18□□□□□ -0.46
NEDD9-201ENST00000379433 RRAGBQ5VZM2 374 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms