RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 KCNB2Q92953 911 aa16.19■□□□□ 0.18
TCOF1-202ENST00000377797 EPB41P11171 864 aaKnown RBP16.19■□□□□ 0.18
TCOF1-202ENST00000377797 C3orf67Q6ZVT6 689 aa16.19■□□□□ 0.18
TCOF1-202ENST00000377797 SULF1Q8IWU6 871 aa16.19■□□□□ 0.18
TCOF1-202ENST00000377797 MRFAP1L1Q96HT8 127 aa16.19■□□□□ 0.18
TCOF1-202ENST00000377797 FRMD4BQ9Y2L6 1034 aa16.19■□□□□ 0.18
TCOF1-202ENST00000377797 CETN2P41208 172 aa16.18■□□□□ 0.18
TCOF1-202ENST00000377797 DPY19L2Q6NUT2 758 aa16.18■□□□□ 0.18
TCOF1-202ENST00000377797 PTPREP23469 700 aa16.18■□□□□ 0.18
TCOF1-202ENST00000377797 CYP4A11Q02928 519 aa16.18■□□□□ 0.18
TCOF1-202ENST00000377797 LRMPQ12912 555 aa16.18■□□□□ 0.18
TCOF1-202ENST00000377797 TRIM14Q14142 442 aa16.18■□□□□ 0.18
TCOF1-202ENST00000377797 PLA2G4DQ86XP0 818 aa16.18■□□□□ 0.18
TCOF1-202ENST00000377797 SENP2Q9HC62 589 aa16.18■□□□□ 0.18
TCOF1-202ENST00000377797 SUGT1Q9Y2Z0 365 aa16.18■□□□□ 0.18
TCOF1-202ENST00000377797 GUCY1A2P33402 732 aa16.18■□□□□ 0.18
TCOF1-202ENST00000377797 EAPPQ56P03 285 aaPredicted RBP16.18■□□□□ 0.18
TCOF1-202ENST00000377797 CCDC102AQ96A19 550 aa16.18■□□□□ 0.18
TCOF1-202ENST00000377797 EEF2KMTQ96G04 330 aa16.18■□□□□ 0.18
TCOF1-202ENST00000377797 PNMA6FA0A0J9YX94 578 aa16.18■□□□□ 0.18
TCOF1-202ENST00000377797 TESPA1A2RU30 521 aaPredicted RBP16.18■□□□□ 0.18
TCOF1-202ENST00000377797 SEPT2Q15019 361 aa16.18■□□□□ 0.18
TCOF1-202ENST00000377797 UBE2SQ16763 222 aa16.18■□□□□ 0.18
TCOF1-202ENST00000377797 ZNF569Q5MCW4 686 aa16.18■□□□□ 0.18
TCOF1-202ENST00000377797 MRPL44Q9H9J2 332 aaKnown RBP16.18■□□□□ 0.18
TCOF1-202ENST00000377797 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.18■□□□□ 0.18
TCOF1-202ENST00000377797 V9GYY5 206 aaPredicted RBP16.18■□□□□ 0.18
TCOF1-202ENST00000377797 AKAP12Q02952 1782 aa16.18■□□□□ 0.18
TCOF1-202ENST00000377797 SLIT3O75094 1523 aa16.18■□□□□ 0.18
TCOF1-202ENST00000377797 TACC1O75410 805 aa16.17■□□□□ 0.18
TCOF1-202ENST00000377797 GCNT3O95395 438 aa16.17■□□□□ 0.18
TCOF1-202ENST00000377797 STAT2P52630 851 aa16.17■□□□□ 0.18
TCOF1-202ENST00000377797 PRPF4BQ13523 1007 aaKnown RBP16.17■□□□□ 0.18
TCOF1-202ENST00000377797 RAPGEF1Q13905 1077 aa16.17■□□□□ 0.18
TCOF1-202ENST00000377797 SBK1Q52WX2 424 aa16.17■□□□□ 0.18
TCOF1-202ENST00000377797 AK8Q96MA6 479 aa16.17■□□□□ 0.18
TCOF1-202ENST00000377797 RNF216Q9NWF9 866 aaPredicted RBP16.17■□□□□ 0.18
TCOF1-202ENST00000377797 SPATA1Q5VX52 437 aa16.17■□□□□ 0.18
TCOF1-202ENST00000377797 TXNRD3Q86VQ6 643 aa16.17■□□□□ 0.18
TCOF1-202ENST00000377797 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.17■□□□□ 0.188e-6■■■■■ 36.2
TCOF1-202ENST00000377797 SMTNP53814 917 aa16.17■□□□□ 0.18
TCOF1-202ENST00000377797 SETQ01105 290 aaPredicted RBP16.17■□□□□ 0.18
TCOF1-202ENST00000377797 GPR162Q16538 588 aa16.17■□□□□ 0.18
TCOF1-202ENST00000377797 CDC37Q16543 378 aaPredicted RBP16.17■□□□□ 0.18
TCOF1-202ENST00000377797 SYDE2Q5VT97 1194 aa16.17■□□□□ 0.18
TCOF1-202ENST00000377797 NLRX1Q86UT6 975 aa16.17■□□□□ 0.18
TCOF1-202ENST00000377797 CRACR2AQ9BSW2 395 aa16.17■□□□□ 0.18
TCOF1-202ENST00000377797 CENPHQ9H3R5 247 aa16.17■□□□□ 0.18
TCOF1-202ENST00000377797 MYO3BQ8WXR4 1341 aa16.17■□□□□ 0.18
TCOF1-202ENST00000377797 IGSF3O75054 1194 aa16.17■□□□□ 0.18
TCOF1-202ENST00000377797 SLU7O95391 586 aaKnown RBP16.17■□□□□ 0.18
TCOF1-202ENST00000377797 MORC3Q14149 939 aa16.17■□□□□ 0.18
TCOF1-202ENST00000377797 SLC39A2Q9NP94 309 aa16.17■□□□□ 0.18
TCOF1-202ENST00000377797 CGNQ9P2M7 1197 aaKnown RBP16.17■□□□□ 0.18
TCOF1-202ENST00000377797 CTAGE9A4FU28 777 aa16.16■□□□□ 0.18
TCOF1-202ENST00000377797 GOLGA6L10A6NI86 522 aa16.16■□□□□ 0.18
TCOF1-202ENST00000377797 KIF28PB7ZC32 967 aa16.16■□□□□ 0.18
TCOF1-202ENST00000377797 ARHGAP6O43182 974 aa16.16■□□□□ 0.18
TCOF1-202ENST00000377797 UBXN2AP68543 259 aa16.16■□□□□ 0.18
TCOF1-202ENST00000377797 SMYD4Q8IYR2 804 aaPredicted RBP16.16■□□□□ 0.18
TCOF1-202ENST00000377797 PEAK1Q9H792 1746 aa16.16■□□□□ 0.18
TCOF1-202ENST00000377797 RGPD8O14715 1765 aaPredicted RBP16.16■□□□□ 0.18
TCOF1-202ENST00000377797 AKR1B1P15121 316 aa16.16■□□□□ 0.18
TCOF1-202ENST00000377797 GCFC2P16383 781 aaKnown RBP16.16■□□□□ 0.18
TCOF1-202ENST00000377797 GRM4Q14833 912 aa16.16■□□□□ 0.18
TCOF1-202ENST00000377797 SH3GLB2Q9NR46 395 aa16.16■□□□□ 0.18
TCOF1-202ENST00000377797 DKC1O60832 514 aaKnown RBP eCLIP16.16■□□□□ 0.18
TCOF1-202ENST00000377797 IFI16Q16666 785 aaKnown RBP16.16■□□□□ 0.18
TCOF1-202ENST00000377797 MIER3Q7Z3K6 550 aa16.16■□□□□ 0.18
TCOF1-202ENST00000377797 STAG2Q8N3U4 1231 aa16.16■□□□□ 0.18
TCOF1-202ENST00000377797 KIAA1024Q9UPX6 916 aa16.16■□□□□ 0.18
TCOF1-202ENST00000377797 MCF2L2Q86YR7 1114 aa16.16■□□□□ 0.18
TCOF1-202ENST00000377797 MYOCDQ8IZQ8 938 aa16.16■□□□□ 0.18
TCOF1-202ENST00000377797 ADKP55263 362 aaKnown RBP16.15■□□□□ 0.18
TCOF1-202ENST00000377797 DCPSQ96C86 337 aaKnown RBP16.15■□□□□ 0.18
TCOF1-202ENST00000377797 FLT1P17948 1338 aa16.15■□□□□ 0.18
TCOF1-202ENST00000377797 XRN1Q8IZH2 1706 aaKnown RBP16.15■□□□□ 0.18
TCOF1-202ENST00000377797 KCNJ18B7U540 433 aa16.15■□□□□ 0.18
TCOF1-202ENST00000377797 CALUO43852 315 aaPredicted RBP16.15■□□□□ 0.18
TCOF1-202ENST00000377797 DESP17661 470 aa16.15■□□□□ 0.18
TCOF1-202ENST00000377797 KCNJ12Q14500 433 aa16.15■□□□□ 0.18
TCOF1-202ENST00000377797 CCDC122Q5T0U0 273 aa16.15■□□□□ 0.18
TCOF1-202ENST00000377797 SRBD1Q8N5C6 995 aaKnown RBP16.15■□□□□ 0.18
TCOF1-202ENST00000377797 PAGR1Q9BTK6 254 aa16.15■□□□□ 0.18
TCOF1-202ENST00000377797 MXD3Q9BW11 206 aa16.15■□□□□ 0.18
TCOF1-202ENST00000377797 MAP9Q49MG5 647 aa16.15■□□□□ 0.18
TCOF1-202ENST00000377797 ARHGEF16Q5VV41 709 aa16.15■□□□□ 0.18
TCOF1-202ENST00000377797 COL23A1Q86Y22 540 aaPredicted RBP16.15■□□□□ 0.18
TCOF1-202ENST00000377797 MACROD2A1Z1Q3 448 aa16.15■□□□□ 0.18
TCOF1-202ENST00000377797 ASNSP08243 561 aa16.15■□□□□ 0.18
TCOF1-202ENST00000377797 ARL6IP4Q66PJ3 421 aaKnown RBP16.15■□□□□ 0.18
TCOF1-202ENST00000377797 PTF1AQ7RTS3 328 aa16.15■□□□□ 0.18
TCOF1-202ENST00000377797 LARP4BQ92615 738 aaKnown RBP16.15■□□□□ 0.18
TCOF1-202ENST00000377797 CUEDC2Q9H467 287 aa16.15■□□□□ 0.18
TCOF1-202ENST00000377797 GOLPH3LQ9H4A5 285 aa16.15■□□□□ 0.18
TCOF1-202ENST00000377797 CTDNEP1O95476 244 aa16.14■□□□□ 0.17
TCOF1-202ENST00000377797 ERCC5P28715 1186 aaPredicted RBP16.14■□□□□ 0.17
TCOF1-202ENST00000377797 SNAP25P60880 206 aa16.14■□□□□ 0.17
TCOF1-202ENST00000377797 GRIPAP1Q4V328 841 aa16.14■□□□□ 0.17
TCOF1-202ENST00000377797 FAM26FQ5R3K3 315 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms