RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 AP5M1Q9H0R1 490 aa16.84■□□□□ 0.29
PTCH1-202ENST00000375271 THEGQ9P2T0 379 aa16.84■□□□□ 0.29
PTCH1-202ENST00000375271 DNAJC25-GNG10A0A024R161 153 aa16.83■□□□□ 0.28
PTCH1-202ENST00000375271 MYADML2A6NDP7 307 aa16.83■□□□□ 0.28
PTCH1-202ENST00000375271 ATP2A1O14983 1001 aa16.83■□□□□ 0.28
PTCH1-202ENST00000375271 TTLL1O95922 423 aa16.83■□□□□ 0.28
PTCH1-202ENST00000375271 FDX1P10109 184 aa16.83■□□□□ 0.28
PTCH1-202ENST00000375271 GNAT2P19087 354 aa16.83■□□□□ 0.28
PTCH1-202ENST00000375271 RASA1P20936 1047 aa16.83■□□□□ 0.28
PTCH1-202ENST00000375271 OAZ1P54368 228 aa16.83■□□□□ 0.28
PTCH1-202ENST00000375271 GJA9P57773 515 aa16.83■□□□□ 0.28
PTCH1-202ENST00000375271 SBK1Q52WX2 424 aa16.83■□□□□ 0.28
PTCH1-202ENST00000375271 PBX4Q9BYU1 374 aa16.83■□□□□ 0.28
PTCH1-202ENST00000375271 NACAP1Q9BZK3 213 aa16.83■□□□□ 0.28
PTCH1-202ENST00000375271 PRDM12Q9H4Q4 367 aa16.83■□□□□ 0.28
PTCH1-202ENST00000375271 ACAD9Q9H845 621 aa16.83■□□□□ 0.28
PTCH1-202ENST00000375271 SLC28A3Q9HAS3 691 aa16.83■□□□□ 0.28
PTCH1-202ENST00000375271 RIPK3Q9Y572 518 aa16.83■□□□□ 0.28
PTCH1-202ENST00000375271 MYH4Q9Y623 1939 aa16.83■□□□□ 0.28
PTCH1-202ENST00000375271 CABYRO75952 493 aa16.82■□□□□ 0.28
PTCH1-202ENST00000375271 TSPY3P0CV98 308 aa16.82■□□□□ 0.28
PTCH1-202ENST00000375271 TSPY8P0CW00 308 aa16.82■□□□□ 0.28
PTCH1-202ENST00000375271 ACRP10323 421 aa16.82■□□□□ 0.28
PTCH1-202ENST00000375271 TNFAIP2Q03169 654 aa16.82■□□□□ 0.28
PTCH1-202ENST00000375271 PDE4BQ07343 736 aa16.82■□□□□ 0.28
PTCH1-202ENST00000375271 PPP4R3BQ5MIZ7 849 aa16.82■□□□□ 0.28
PTCH1-202ENST00000375271 TMEM240Q5SV17 173 aa16.82■□□□□ 0.28
PTCH1-202ENST00000375271 ZNF365Q70YC5 407 aa16.82■□□□□ 0.28
PTCH1-202ENST00000375271 CCDC144CPQ8IYA2 1237 aa16.82■□□□□ 0.28
PTCH1-202ENST00000375271 LRRC47Q8N1G4 583 aaKnown RBP16.82■□□□□ 0.28
PTCH1-202ENST00000375271 USP38Q8NB14 1042 aa16.82■□□□□ 0.28
PTCH1-202ENST00000375271 ATXN2LQ8WWM7 1075 aaKnown RBP16.82■□□□□ 0.28
PTCH1-202ENST00000375271 HIPK3Q9H422 1215 aa16.82■□□□□ 0.28
PTCH1-202ENST00000375271 SLC38A10Q9HBR0 1119 aa16.82■□□□□ 0.28
PTCH1-202ENST00000375271 ECHDC1Q9NTX5 307 aa16.82■□□□□ 0.28
PTCH1-202ENST00000375271 ASB14A6NK59 587 aa16.81■□□□□ 0.28
PTCH1-202ENST00000375271 FGBP02675 491 aa16.81■□□□□ 0.28
PTCH1-202ENST00000375271 CHGBP05060 677 aa16.81■□□□□ 0.28
PTCH1-202ENST00000375271 ZFYP08048 801 aaPredicted RBP16.81■□□□□ 0.28
PTCH1-202ENST00000375271 BMP3P12645 472 aa16.81■□□□□ 0.28
PTCH1-202ENST00000375271 STAT2P52630 851 aa16.81■□□□□ 0.28
PTCH1-202ENST00000375271 AKNAD1Q5T1N1 836 aa16.81■□□□□ 0.28
PTCH1-202ENST00000375271 SLFN13Q68D06 897 aa16.81■□□□□ 0.28
PTCH1-202ENST00000375271 CCSAPQ6IQ19 270 aaPredicted RBP16.81■□□□□ 0.28
PTCH1-202ENST00000375271 TLK2Q86UE8 772 aa16.81■□□□□ 0.28
PTCH1-202ENST00000375271 FAM126BQ8IXS8 530 aa16.81■□□□□ 0.28
PTCH1-202ENST00000375271 APPBP2Q92624 585 aa16.81■□□□□ 0.28
PTCH1-202ENST00000375271 STRBPQ96SI9 672 aaKnown RBP16.81■□□□□ 0.28
PTCH1-202ENST00000375271 UPF3AQ9H1J1 476 aaKnown RBP16.81■□□□□ 0.28
PTCH1-202ENST00000375271 IL23AQ9NPF7 189 aa16.81■□□□□ 0.28
PTCH1-202ENST00000375271 ZBTB40Q9NUA8 1239 aa16.81■□□□□ 0.28
PTCH1-202ENST00000375271 SYNPO2Q9UMS6 1093 aa16.81■□□□□ 0.28
PTCH1-202ENST00000375271 GRXCR1A8MXD5 290 aa16.8■□□□□ 0.28
PTCH1-202ENST00000375271 PRDM1O75626 825 aa16.8■□□□□ 0.28
PTCH1-202ENST00000375271 PBX2P40425 430 aa16.8■□□□□ 0.28
PTCH1-202ENST00000375271 CDK7P50613 346 aa16.8■□□□□ 0.28
PTCH1-202ENST00000375271 CCDC85BQ15834 202 aaPredicted RBP16.8■□□□□ 0.28
PTCH1-202ENST00000375271 GMCL1P1Q8NEA9 526 aa16.8■□□□□ 0.28
PTCH1-202ENST00000375271 CHURC1Q8WUH1 139 aa16.8■□□□□ 0.28
PTCH1-202ENST00000375271 CEP95Q96GE4 821 aa16.8■□□□□ 0.28
PTCH1-202ENST00000375271 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.8■□□□□ 0.28
PTCH1-202ENST00000375271 SEZ6LQ9BYH1 1024 aa16.8■□□□□ 0.28
PTCH1-202ENST00000375271 MCM3APO60318 1980 aa16.8■□□□□ 0.28
PTCH1-202ENST00000375271 GREB1LQ9C091 1923 aaPredicted RBP16.8■□□□□ 0.28
PTCH1-202ENST00000375271 SPTBN5Q9NRC6 3674 aaKnown RBP16.8■□□□□ 0.28
PTCH1-202ENST00000375271 ZBBXA8MT70 800 aa16.79■□□□□ 0.28
PTCH1-202ENST00000375271 GSG1L2A8MUP6 293 aa16.79■□□□□ 0.28
PTCH1-202ENST00000375271 TMEM232C9JQI7 657 aa16.79■□□□□ 0.28
PTCH1-202ENST00000375271 GPAA1O43292 621 aa16.79■□□□□ 0.28
PTCH1-202ENST00000375271 CYP2C18P33260 490 aa16.79■□□□□ 0.28
PTCH1-202ENST00000375271 SLC1A4P43007 532 aa16.79■□□□□ 0.28
PTCH1-202ENST00000375271 MRPS5P82675 430 aaKnown RBP16.79■□□□□ 0.28
PTCH1-202ENST00000375271 BEX3Q00994 111 aa16.79■□□□□ 0.28
PTCH1-202ENST00000375271 CXCL17Q6UXB2 119 aa16.79■□□□□ 0.28
PTCH1-202ENST00000375271 FAM160B2Q86V87 743 aa16.79■□□□□ 0.28
PTCH1-202ENST00000375271 SIRT2Q8IXJ6 389 aa16.79■□□□□ 0.28
PTCH1-202ENST00000375271 RPUSD2Q8IZ73 545 aaKnown RBP16.79■□□□□ 0.28
PTCH1-202ENST00000375271 KBTBD3Q8NAB2 608 aa16.79■□□□□ 0.28
PTCH1-202ENST00000375271 RNF146Q9NTX7 359 aa16.79■□□□□ 0.28
PTCH1-202ENST00000375271 RNF113AO15541 343 aaKnown RBP16.78■□□□□ 0.28
PTCH1-202ENST00000375271 ALAS1P13196 640 aa16.78■□□□□ 0.28
PTCH1-202ENST00000375271 COL9A1P20849 921 aa16.78■□□□□ 0.28
PTCH1-202ENST00000375271 IRX5P78411 483 aaPredicted RBP16.78■□□□□ 0.28
PTCH1-202ENST00000375271 ITGA7Q13683 1181 aa16.78■□□□□ 0.28
PTCH1-202ENST00000375271 FSCN1Q16658 493 aaKnown RBP16.78■□□□□ 0.28
PTCH1-202ENST00000375271 TKFCQ3LXA3 575 aa16.78■□□□□ 0.28
PTCH1-202ENST00000375271 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.78■□□□□ 0.28
PTCH1-202ENST00000375271 OTOP2Q7RTS6 562 aa16.78■□□□□ 0.28
PTCH1-202ENST00000375271 MICALL1Q8N3F8 863 aa16.78■□□□□ 0.28
PTCH1-202ENST00000375271 HERVK_113Q902F9 699 aa16.78■□□□□ 0.28
PTCH1-202ENST00000375271 NAPBQ9H115 298 aa16.78■□□□□ 0.28
PTCH1-202ENST00000375271 NKX2-4Q9H2Z4 354 aa16.78■□□□□ 0.28
PTCH1-202ENST00000375271 MTMR4Q9NYA4 1195 aa16.78■□□□□ 0.28
PTCH1-202ENST00000375271 SMARCA5O60264 1052 aaPredicted RBP16.77■□□□□ 0.28
PTCH1-202ENST00000375271 CNTN2Q02246 1040 aa16.77■□□□□ 0.28
PTCH1-202ENST00000375271 SKIV2LQ15477 1246 aaKnown RBP16.77■□□□□ 0.28
PTCH1-202ENST00000375271 PPP2R2DQ66LE6 453 aa16.77■□□□□ 0.28
PTCH1-202ENST00000375271 ADAMTS19Q8TE59 1207 aa16.77■□□□□ 0.28
PTCH1-202ENST00000375271 MKL1Q969V6 931 aa16.77■□□□□ 0.28
PTCH1-202ENST00000375271 CHMP4CQ96CF2 233 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 118 ms