RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 CERKLQ49MI3 558 aaPredicted RBP17.76■□□□□ 0.43
CCDC40-202ENST00000374876 WNK4Q96J92 1243 aa17.76■□□□□ 0.43
CCDC40-202ENST00000374876 FOXP1Q9H334 677 aaPredicted RBP17.76■□□□□ 0.43
CCDC40-202ENST00000374876 KCNJ14Q9UNX9 436 aa17.76■□□□□ 0.43
CCDC40-202ENST00000374876 HPSEQ9Y251 543 aa17.76■□□□□ 0.43
CCDC40-202ENST00000374876 SEC23AQ15436 765 aa17.76■□□□□ 0.43
CCDC40-202ENST00000374876 RESP18Q5W5W9 173 aa17.76■□□□□ 0.43
CCDC40-202ENST00000374876 ZSCAN10Q96SZ4 725 aaPredicted RBP17.76■□□□□ 0.43
CCDC40-202ENST00000374876 FAM237AA0A1B0GTK4 181 aa17.75■□□□□ 0.43
CCDC40-202ENST00000374876 DYNC1I1O14576 645 aa17.75■□□□□ 0.43
CCDC40-202ENST00000374876 PCP11498 1178 aaKnown RBP17.75■□□□□ 0.43
CCDC40-202ENST00000374876 PTPRAP18433 802 aa17.75■□□□□ 0.43
CCDC40-202ENST00000374876 AKAP17AQ02040 695 aaKnown RBP17.75■□□□□ 0.43
CCDC40-202ENST00000374876 CCDC144BQ3MJ40 725 aa17.75■□□□□ 0.43
CCDC40-202ENST00000374876 NOL9Q5SY16 702 aaKnown RBP17.75■□□□□ 0.43
CCDC40-202ENST00000374876 C16orf86Q6ZW13 317 aa17.75■□□□□ 0.43
CCDC40-202ENST00000374876 ERO1BQ86YB8 467 aa17.75■□□□□ 0.43
CCDC40-202ENST00000374876 KRI1Q8N9T8 703 aaKnown RBP17.75■□□□□ 0.43
CCDC40-202ENST00000374876 CLIC6Q96NY7 704 aa17.75■□□□□ 0.43
CCDC40-202ENST00000374876 PICK1Q9NRD5 415 aa17.75■□□□□ 0.43
CCDC40-202ENST00000374876 ZHX2Q9Y6X8 837 aa17.75■□□□□ 0.43
CCDC40-202ENST00000374876 SPDYE5A6NIY4 337 aa17.74■□□□□ 0.43
CCDC40-202ENST00000374876 PRDM1O75626 825 aa17.74■□□□□ 0.43
CCDC40-202ENST00000374876 TPM4P67936 248 aa17.74■□□□□ 0.43
CCDC40-202ENST00000374876 NOGQ13253 232 aa17.74■□□□□ 0.43
CCDC40-202ENST00000374876 RILPL1Q5EBL4 403 aa17.74■□□□□ 0.43
CCDC40-202ENST00000374876 IFIT1BQ5T764 474 aaKnown RBP17.74■□□□□ 0.43
CCDC40-202ENST00000374876 IQCA1Q86XH1 822 aa17.74■□□□□ 0.43
CCDC40-202ENST00000374876 ENAHQ8N8S7 591 aaPredicted RBP17.74■□□□□ 0.43
CCDC40-202ENST00000374876 IRF6O14896 467 aa17.74■□□□□ 0.43
CCDC40-202ENST00000374876 RRP9O43818 475 aaKnown RBP17.74■□□□□ 0.43
CCDC40-202ENST00000374876 HSP90AA2PQ14568 343 aaPredicted RBP17.74■□□□□ 0.43
CCDC40-202ENST00000374876 CATIPQ7Z7H3 387 aa17.74■□□□□ 0.43
CCDC40-202ENST00000374876 MYRIPQ8NFW9 859 aa17.74■□□□□ 0.43
CCDC40-202ENST00000374876 CACTINQ8WUQ7 758 aaKnown RBP17.74■□□□□ 0.43
CCDC40-202ENST00000374876 RNF26Q9BY78 433 aaPredicted RBP17.74■□□□□ 0.43
CCDC40-202ENST00000374876 SWAP70Q9UH65 585 aa17.74■□□□□ 0.43
CCDC40-202ENST00000374876 MPHOSPH10O00566 681 aaKnown RBP17.73■□□□□ 0.43
CCDC40-202ENST00000374876 NEMFO60524 1076 aa17.73■□□□□ 0.43
CCDC40-202ENST00000374876 GH2P01242 217 aa17.73■□□□□ 0.43
CCDC40-202ENST00000374876 XBP1P17861 261 aa17.73■□□□□ 0.43
CCDC40-202ENST00000374876 MKNK2Q9HBH9 465 aa17.73■□□□□ 0.43
CCDC40-202ENST00000374876 SMTNL1A8MU46 457 aa17.72■□□□□ 0.43
CCDC40-202ENST00000374876 ZBTB48P10074 688 aaPredicted RBP17.72■□□□□ 0.43
CCDC40-202ENST00000374876 TOB1P50616 345 aaPredicted RBP17.72■□□□□ 0.43
CCDC40-202ENST00000374876 PPATQ06203 517 aa17.72■□□□□ 0.43
CCDC40-202ENST00000374876 ABCB5Q2M3G0 1257 aa17.72■□□□□ 0.43
CCDC40-202ENST00000374876 KCNH3Q9ULD8 1083 aa17.72■□□□□ 0.43
CCDC40-202ENST00000374876 FGRP09769 529 aa17.72■□□□□ 0.43
CCDC40-202ENST00000374876 AKR1B1P15121 316 aa17.72■□□□□ 0.43
CCDC40-202ENST00000374876 MAP2K2P36507 400 aa17.72■□□□□ 0.43
CCDC40-202ENST00000374876 LRRC8AQ8IWT6 810 aa17.72■□□□□ 0.43
CCDC40-202ENST00000374876 TUBE1Q9UJT0 475 aa17.72■□□□□ 0.43
CCDC40-202ENST00000374876 ZBTB21Q9ULJ3 1066 aa17.72■□□□□ 0.43
CCDC40-202ENST00000374876 ASNSP08243 561 aa17.71■□□□□ 0.43
CCDC40-202ENST00000374876 CALM1P0DP23 149 aa17.71■□□□□ 0.43
CCDC40-202ENST00000374876 CALM2P0DP24 149 aa17.71■□□□□ 0.43
CCDC40-202ENST00000374876 CALM3P0DP25 149 aa17.71■□□□□ 0.43
CCDC40-202ENST00000374876 NR5A1Q13285 461 aa17.71■□□□□ 0.43
CCDC40-202ENST00000374876 FILIP1Q7Z7B0 1213 aa17.71■□□□□ 0.43
CCDC40-202ENST00000374876 CNNM3Q8NE01 707 aa17.71■□□□□ 0.43
CCDC40-202ENST00000374876 RBM28Q9NW13 759 aaKnown RBP17.71■□□□□ 0.43
CCDC40-202ENST00000374876 CEP131Q9UPN4 1083 aa17.71■□□□□ 0.43
CCDC40-202ENST00000374876 DOCK1Q14185 1865 aa17.71■□□□□ 0.43
CCDC40-202ENST00000374876 PPIL2Q13356 520 aa17.71■□□□□ 0.42
CCDC40-202ENST00000374876 ISM2Q6H9L7 571 aa17.71■□□□□ 0.42
CCDC40-202ENST00000374876 CABP5Q9NP86 173 aa17.71■□□□□ 0.42
CCDC40-202ENST00000374876 FAM13BQ9NYF5 915 aa17.71■□□□□ 0.42
CCDC40-202ENST00000374876 HOOK1Q9UJC3 728 aaKnown RBP17.71■□□□□ 0.42
CCDC40-202ENST00000374876 AFG3L2Q9Y4W6 797 aa17.71■□□□□ 0.42
CCDC40-202ENST00000374876 ATAD5Q96QE3 1844 aa17.71■□□□□ 0.42
CCDC40-202ENST00000374876 ROBO3Q96MS0 1386 aa17.7■□□□□ 0.42
CCDC40-202ENST00000374876 TRIM75PA6NK02 468 aa17.7■□□□□ 0.42
CCDC40-202ENST00000374876 USP17L5A8MUK1 530 aa17.7■□□□□ 0.42
CCDC40-202ENST00000374876 RASA1P20936 1047 aa17.7■□□□□ 0.42
CCDC40-202ENST00000374876 PNOCQ13519 176 aa17.7■□□□□ 0.42
CCDC40-202ENST00000374876 SEPT2Q15019 361 aa17.7■□□□□ 0.42
CCDC40-202ENST00000374876 LONRF3Q496Y0 759 aa17.7■□□□□ 0.42
CCDC40-202ENST00000374876 KRBA2Q6ZNG9 492 aa17.7■□□□□ 0.42
CCDC40-202ENST00000374876 MS4A4AQ96JQ5 239 aa17.7■□□□□ 0.42
CCDC40-202ENST00000374876 LAMB1P07942 1786 aa17.7■□□□□ 0.42
CCDC40-202ENST00000374876 SMC2O95347 1197 aa17.69■□□□□ 0.42
CCDC40-202ENST00000374876 RBM10P98175 930 aaKnown RBP17.69■□□□□ 0.42
CCDC40-202ENST00000374876 PDE4BQ07343 736 aa17.69■□□□□ 0.42
CCDC40-202ENST00000374876 SPP2Q13103 211 aa17.69■□□□□ 0.42
CCDC40-202ENST00000374876 ZNF444Q8N0Y2 327 aaPredicted RBP17.69■□□□□ 0.42
CCDC40-202ENST00000374876 OXER1Q8TDS5 423 aa17.69■□□□□ 0.42
CCDC40-202ENST00000374876 FBXO2Q9UK22 296 aaPredicted RBP17.69■□□□□ 0.42
CCDC40-202ENST00000374876 IKBKBO14920 756 aa17.69■□□□□ 0.42
CCDC40-202ENST00000374876 PRPF3O43395 683 aaKnown RBP17.69■□□□□ 0.42
CCDC40-202ENST00000374876 ORC4O43929 436 aa17.69■□□□□ 0.42
CCDC40-202ENST00000374876 DDAH1O94760 285 aa17.69■□□□□ 0.42
CCDC40-202ENST00000374876 PTPREP23469 700 aa17.69■□□□□ 0.42
CCDC40-202ENST00000374876 FAM47AQ5JRC9 791 aa17.69■□□□□ 0.42
CCDC40-202ENST00000374876 SPECC1Q5M775 1068 aa17.69■□□□□ 0.42
CCDC40-202ENST00000374876 CLEC10AQ8IUN9 316 aa17.69■□□□□ 0.42
CCDC40-202ENST00000374876 VPS54Q9P1Q0 977 aa17.69■□□□□ 0.42
CCDC40-202ENST00000374876 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.69■□□□□ 0.42
CCDC40-202ENST00000374876 PCDHB6Q9Y5E3 794 aa17.69■□□□□ 0.42
CCDC40-202ENST00000374876 MYH8P13535 1937 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms