RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 ZNF865P0CJ78 1059 aaPredicted RBP12.34□□□□□ -0.43
CLRN3-201ENST00000368671 GNAT2P19087 354 aa12.34□□□□□ -0.43
CLRN3-201ENST00000368671 DSG2Q14126 1118 aa12.34□□□□□ -0.43
CLRN3-201ENST00000368671 C9orf50Q5SZB4 431 aa12.34□□□□□ -0.43
CLRN3-201ENST00000368671 LRRC47Q8N1G4 583 aaKnown RBP12.34□□□□□ -0.43
CLRN3-201ENST00000368671 KIFC2Q96AC6 838 aa12.34□□□□□ -0.43
CLRN3-201ENST00000368671 TRIM43Q96BQ3 446 aaPredicted RBP12.34□□□□□ -0.43
CLRN3-201ENST00000368671 RAVER2Q9HCJ3 691 aaKnown RBP12.34□□□□□ -0.43
CLRN3-201ENST00000368671 ZSWIM6Q9HCJ5 1215 aa12.34□□□□□ -0.43
CLRN3-201ENST00000368671 ZHX1Q9UKY1 873 aaPredicted RBP12.34□□□□□ -0.43
CLRN3-201ENST00000368671 ISY1Q9ULR0 285 aaKnown RBP12.34□□□□□ -0.43
CLRN3-201ENST00000368671 PHF24Q9UPV7 400 aa12.34□□□□□ -0.43
CLRN3-201ENST00000368671 SMCHD1A6NHR9 2005 aa12.33□□□□□ -0.43
CLRN3-201ENST00000368671 IGKV6D-41A0A0C4DH26 115 aa12.33□□□□□ -0.44
CLRN3-201ENST00000368671 A0A1W2PQ45 241 aaPredicted RBP12.33□□□□□ -0.44
CLRN3-201ENST00000368671 A0A1W2PQY0 241 aa12.33□□□□□ -0.44
CLRN3-201ENST00000368671 PDE4AP27815 886 aa12.33□□□□□ -0.44
CLRN3-201ENST00000368671 TLE2Q04725 743 aa12.33□□□□□ -0.44
CLRN3-201ENST00000368671 MFSD10Q14728 455 aa12.33□□□□□ -0.44
CLRN3-201ENST00000368671 ZNF697Q5TEC3 545 aa12.33□□□□□ -0.44
CLRN3-201ENST00000368671 IFNL3Q8IZI9 196 aa12.33□□□□□ -0.44
CLRN3-201ENST00000368671 PRPF38AQ8NAV1 312 aaKnown RBP12.33□□□□□ -0.44
CLRN3-201ENST00000368671 CEP95Q96GE4 821 aa12.33□□□□□ -0.44
CLRN3-201ENST00000368671 GUCD1Q96NT3 240 aa12.33□□□□□ -0.44
CLRN3-201ENST00000368671 SEC62Q99442 399 aaKnown RBP12.33□□□□□ -0.44
CLRN3-201ENST00000368671 ZNF287Q9HBT7 754 aa12.33□□□□□ -0.44
CLRN3-201ENST00000368671 PATL2C9JE40 543 aaKnown RBP12.32□□□□□ -0.44
CLRN3-201ENST00000368671 PQBP1O60828 265 aaKnown RBP12.32□□□□□ -0.44
CLRN3-201ENST00000368671 ADAMTS4O75173 837 aa12.32□□□□□ -0.44
CLRN3-201ENST00000368671 CLTBP09497 229 aa12.32□□□□□ -0.44
CLRN3-201ENST00000368671 TSPY3P0CV98 308 aa12.32□□□□□ -0.44
CLRN3-201ENST00000368671 TSPY8P0CW00 308 aa12.32□□□□□ -0.44
CLRN3-201ENST00000368671 LRRFIP1Q32MZ4 808 aaKnown RBP12.32□□□□□ -0.44
CLRN3-201ENST00000368671 C1orf53Q5VUE5 145 aa12.32□□□□□ -0.44
CLRN3-201ENST00000368671 FAM109BQ6ICB4 259 aaPredicted RBP12.32□□□□□ -0.44
CLRN3-201ENST00000368671 CHMP4CQ96CF2 233 aa12.32□□□□□ -0.44
CLRN3-201ENST00000368671 FSD1Q9BTV5 496 aa12.32□□□□□ -0.44
CLRN3-201ENST00000368671 FAM184BQ9ULE4 1060 aa12.32□□□□□ -0.44
CLRN3-201ENST00000368671 TTC41PQ6P2S7 1318 aa12.32□□□□□ -0.44
CLRN3-201ENST00000368671 SYNGAP1Q96PV0 1343 aa12.32□□□□□ -0.44
CLRN3-201ENST00000368671 SYNRGQ9UMZ2 1314 aa12.32□□□□□ -0.44
CLRN3-201ENST00000368671 RANBP2P49792 3224 aaKnown RBP12.31□□□□□ -0.44
CLRN3-201ENST00000368671 DNAJC25-GNG10A0A024R161 153 aa12.31□□□□□ -0.44
CLRN3-201ENST00000368671 ERC2O15083 957 aa12.31□□□□□ -0.44
CLRN3-201ENST00000368671 SNAI1O95863 264 aaPredicted RBP12.31□□□□□ -0.44
CLRN3-201ENST00000368671 TTLL1O95922 423 aa12.31□□□□□ -0.44
CLRN3-201ENST00000368671 RAG1P15918 1043 aa12.31□□□□□ -0.44
CLRN3-201ENST00000368671 ITGB8P26012 769 aa12.31□□□□□ -0.44
CLRN3-201ENST00000368671 PDE4BQ07343 736 aa12.31□□□□□ -0.44
CLRN3-201ENST00000368671 SLFN13Q68D06 897 aa12.31□□□□□ -0.44
CLRN3-201ENST00000368671 ANKRD35Q8N283 1001 aa12.31□□□□□ -0.44
CLRN3-201ENST00000368671 MSL3Q8N5Y2 521 aaKnown RBP12.31□□□□□ -0.44
CLRN3-201ENST00000368671 OTUD7AQ8TE49 926 aaPredicted RBP12.31□□□□□ -0.44
CLRN3-201ENST00000368671 NACAP1Q9BZK3 213 aa12.31□□□□□ -0.44
CLRN3-201ENST00000368671 NAPBQ9H115 298 aa12.31□□□□□ -0.44
CLRN3-201ENST00000368671 STARD7Q9NQZ5 370 aa12.31□□□□□ -0.44
CLRN3-201ENST00000368671 MTMR4Q9NYA4 1195 aa12.31□□□□□ -0.44
CLRN3-201ENST00000368671 FEM1BQ9UK73 627 aa12.31□□□□□ -0.44
CLRN3-201ENST00000368671 TACC3Q9Y6A5 838 aa12.31□□□□□ -0.44
CLRN3-201ENST00000368671 MYADML2A6NDP7 307 aa12.3□□□□□ -0.44
CLRN3-201ENST00000368671 ATP2A1O14983 1001 aa12.3□□□□□ -0.44
CLRN3-201ENST00000368671 SLC3A2P08195 630 aaKnown RBP12.3□□□□□ -0.44
CLRN3-201ENST00000368671 BMP3P12645 472 aa12.3□□□□□ -0.44
CLRN3-201ENST00000368671 ACLYP53396 1101 aa12.3□□□□□ -0.44
CLRN3-201ENST00000368671 TFAP4Q01664 338 aa12.3□□□□□ -0.44
CLRN3-201ENST00000368671 PPARAQ07869 468 aa12.3□□□□□ -0.44
CLRN3-201ENST00000368671 IKQ13123 557 aaPredicted RBP12.3□□□□□ -0.44
CLRN3-201ENST00000368671 PPP1R15BQ5SWA1 713 aa12.3□□□□□ -0.44
CLRN3-201ENST00000368671 MAMDC4Q6UXC1 1216 aa12.3□□□□□ -0.44
CLRN3-201ENST00000368671 PLPP6Q8IY26 295 aa12.3□□□□□ -0.44
CLRN3-201ENST00000368671 GMCL1P1Q8NEA9 526 aa12.3□□□□□ -0.44
CLRN3-201ENST00000368671 NEDD1Q8NHV4 660 aa12.3□□□□□ -0.44
CLRN3-201ENST00000368671 PI4K2BQ8TCG2 481 aa12.3□□□□□ -0.44
CLRN3-201ENST00000368671 MKL1Q969V6 931 aa12.3□□□□□ -0.44
CLRN3-201ENST00000368671 TSEN34Q9BSV6 310 aaKnown RBP12.3□□□□□ -0.44
CLRN3-201ENST00000368671 SLC38A10Q9HBR0 1119 aa12.3□□□□□ -0.44
CLRN3-201ENST00000368671 HOMER2Q9NSB8 354 aa12.3□□□□□ -0.44
CLRN3-201ENST00000368671 TMEM39AQ9NV64 488 aa12.3□□□□□ -0.44
CLRN3-201ENST00000368671 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.3□□□□□ -0.44
CLRN3-201ENST00000368671 FBXO40Q9UH90 709 aa12.3□□□□□ -0.44
CLRN3-201ENST00000368671 PLIN4Q96Q06 1357 aa12.3□□□□□ -0.44
CLRN3-201ENST00000368671 MCM3APO60318 1980 aa12.29□□□□□ -0.44
CLRN3-201ENST00000368671 MOXD2PA6NHM9 499 aa12.29□□□□□ -0.44
CLRN3-201ENST00000368671 TMEM232C9JQI7 657 aa12.29□□□□□ -0.44
CLRN3-201ENST00000368671 KIAA0355O15063 1070 aa12.29□□□□□ -0.44
CLRN3-201ENST00000368671 C6orf222P0C671 652 aaPredicted RBP12.29□□□□□ -0.44
CLRN3-201ENST00000368671 HOXB1P14653 301 aaPredicted RBP12.29□□□□□ -0.44
CLRN3-201ENST00000368671 EPHB4P54760 987 aa12.29□□□□□ -0.44
CLRN3-201ENST00000368671 ACVR2BQ13705 512 aa12.29□□□□□ -0.44
CLRN3-201ENST00000368671 KCNA10Q16322 511 aa12.29□□□□□ -0.44
CLRN3-201ENST00000368671 ZMYM1Q5SVZ6 1142 aa12.29□□□□□ -0.44
CLRN3-201ENST00000368671 ZNF710Q8N1W2 664 aa12.29□□□□□ -0.44
CLRN3-201ENST00000368671 KLHDC9Q8NEP7 349 aa12.29□□□□□ -0.44
CLRN3-201ENST00000368671 CHST13Q8NET6 341 aa12.29□□□□□ -0.44
CLRN3-201ENST00000368671 NUP133Q8WUM0 1156 aa12.29□□□□□ -0.44
CLRN3-201ENST00000368671 RNPC3Q96LT9 517 aaKnown RBP12.29□□□□□ -0.44
CLRN3-201ENST00000368671 FGD4Q96M96 766 aa12.29□□□□□ -0.44
CLRN3-201ENST00000368671 SYNPO2Q9UMS6 1093 aa12.29□□□□□ -0.44
CLRN3-201ENST00000368671 PCDHB15Q9Y5E8 787 aa12.29□□□□□ -0.44
CLRN3-201ENST00000368671 LRRC37A2A6NM11 1700 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms