RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 SRLQ86TD4 932 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 CCDC170Q8IYT3 715 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 SNX29Q8TEQ0 813 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 EIF2AQ9BY44 585 aaKnown RBP9.78□□□□□ -0.84
SYNE1-209ENST00000367257 TBX22Q9Y458 520 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 A0A1W2PP64 1363 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 ADGRB1O14514 1584 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 POLR2BP30876 1174 aaKnown RBP9.78□□□□□ -0.84
SYNE1-209ENST00000367257 SEPT2Q15019 361 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 CALCRLQ16602 461 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 MUM1L1Q5H9M0 696 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 CCDC89Q8N998 374 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 NGLY1Q96IV0 654 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 MID2Q9UJV3 735 aa9.78□□□□□ -0.84
SYNE1-209ENST00000367257 STRCP1A6NGW2 1772 aa9.77□□□□□ -0.84
SYNE1-209ENST00000367257 KRT15P19012 456 aa9.77□□□□□ -0.84
SYNE1-209ENST00000367257 HIBADHP31937 336 aaKnown RBP9.77□□□□□ -0.84
SYNE1-209ENST00000367257 SLC12A2P55011 1212 aa9.77□□□□□ -0.84
SYNE1-209ENST00000367257 MYSM1Q5VVJ2 828 aa9.77□□□□□ -0.84
SYNE1-209ENST00000367257 SPATA1Q5VX52 437 aa9.77□□□□□ -0.84
SYNE1-209ENST00000367257 CAPRIN2Q6IMN6 1127 aaKnown RBP9.77□□□□□ -0.84
SYNE1-209ENST00000367257 DCUN1D2Q6PH85 259 aa9.77□□□□□ -0.84
SYNE1-209ENST00000367257 KRT26Q7Z3Y9 468 aa9.77□□□□□ -0.84
SYNE1-209ENST00000367257 PODNQ7Z5L7 613 aa9.77□□□□□ -0.84
SYNE1-209ENST00000367257 NLRX1Q86UT6 975 aa9.77□□□□□ -0.84
SYNE1-209ENST00000367257 EXOC8Q8IYI6 725 aa9.77□□□□□ -0.84
SYNE1-209ENST00000367257 AK8Q96MA6 479 aa9.77□□□□□ -0.84
SYNE1-209ENST00000367257 STK17AQ9UEE5 414 aa9.77□□□□□ -0.84
SYNE1-209ENST00000367257 SH3BP5O60239 455 aa9.77□□□□□ -0.85
SYNE1-209ENST00000367257 EEF1GP26641 437 aaKnown RBP9.77□□□□□ -0.85
SYNE1-209ENST00000367257 KPNA2P52292 529 aaKnown RBP9.77□□□□□ -0.85
SYNE1-209ENST00000367257 RAB20Q9NX57 234 aa9.77□□□□□ -0.85
SYNE1-209ENST00000367257 PASKQ96RG2 1323 aa9.77□□□□□ -0.85
SYNE1-209ENST00000367257 ARHGEF28Q8N1W1 1705 aaKnown RBP9.77□□□□□ -0.85
SYNE1-209ENST00000367257 ABCC4O15439 1325 aa9.77□□□□□ -0.85
SYNE1-209ENST00000367257 SMIM23A6NLE4 172 aa9.77□□□□□ -0.85
SYNE1-209ENST00000367257 CTNNA1P35221 906 aaKnown RBP9.77□□□□□ -0.85
SYNE1-209ENST00000367257 PPM1FP49593 454 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-209ENST00000367257 DDB1Q16531 1140 aa9.77□□□□□ -0.85
SYNE1-209ENST00000367257 SRRM1Q8IYB3 904 aaKnown RBP9.77□□□□□ -0.85
SYNE1-209ENST00000367257 TDRD7Q8NHU6 1098 aaKnown RBP9.77□□□□□ -0.85
SYNE1-209ENST00000367257 ZMYM6O95789 1325 aa9.77□□□□□ -0.85
SYNE1-209ENST00000367257 GPAA1O43292 621 aa9.77□□□□□ -0.85
SYNE1-209ENST00000367257 PPP6R2O75170 966 aa9.77□□□□□ -0.85
SYNE1-209ENST00000367257 GCFC2P16383 781 aaKnown RBP9.77□□□□□ -0.85
SYNE1-209ENST00000367257 DEUP1Q05D60 604 aa9.77□□□□□ -0.85
SYNE1-209ENST00000367257 TAF12Q16514 161 aa9.77□□□□□ -0.85
SYNE1-209ENST00000367257 PIK3AP1Q6ZUJ8 805 aa9.77□□□□□ -0.85
SYNE1-209ENST00000367257 MYOCDQ8IZQ8 938 aa9.77□□□□□ -0.85
SYNE1-209ENST00000367257 PDE11AQ9HCR9 933 aa9.77□□□□□ -0.85
SYNE1-209ENST00000367257 PARP3Q9Y6F1 533 aa9.77□□□□□ -0.85
SYNE1-209ENST00000367257 DAPK3O43293 454 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 CCNT1O60563 726 aaKnown RBP9.76□□□□□ -0.85
SYNE1-209ENST00000367257 ZBED4O75132 1171 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 SUN1O94901 812 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 ATF7P17544 494 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-209ENST00000367257 HOXC9P31274 260 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 GEN1Q17RS7 908 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 TCEANC2Q96MN5 208 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 GSDMAQ96QA5 445 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 SCOCQ9UIL1 159 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 FOSP01100 380 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-209ENST00000367257 XRCC5P13010 732 aaKnown RBP9.76□□□□□ -0.85
SYNE1-209ENST00000367257 LMNB1P20700 586 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 CYP2C19P33261 490 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 ACRBPQ8NEB7 543 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 JDP2Q8WYK2 163 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 FAM8A1Q9UBU6 413 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 IPO11Q9UI26 975 aaKnown RBP9.76□□□□□ -0.85
SYNE1-209ENST00000367257 PA2G4Q9UQ80 394 aaKnown RBP9.76□□□□□ -0.85
SYNE1-209ENST00000367257 DIS3Q9Y2L1 958 aaKnown RBP9.76□□□□□ -0.85
SYNE1-209ENST00000367257 SEMA3EO15041 775 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 EXOC3O60645 756 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 PRPF6O94906 941 aaKnown RBP9.76□□□□□ -0.85
SYNE1-209ENST00000367257 EPHB4P54760 987 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 EIF3BP55884 814 aaKnown RBP9.76□□□□□ -0.85
SYNE1-209ENST00000367257 CUL4BQ13620 913 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 LONRF2Q1L5Z9 754 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 ANKRD20A4Q4UJ75 823 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 ANKRD20A8PQ5CZ79 823 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 HERC4Q5GLZ8 1057 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-209ENST00000367257 ANKRD20A2Q5SQ80 823 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 ANKRD20A1Q5TYW2 823 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 REXO1Q8N1G1 1221 aaKnown RBP9.76□□□□□ -0.85
SYNE1-209ENST00000367257 FNBP4Q8N3X1 1017 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-209ENST00000367257 CDKL2Q92772 493 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 FAM96AQ9H5X1 160 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 C19orf44Q9H6X5 657 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.76□□□□□ -0.85
SYNE1-209ENST00000367257 MARF1Q9Y4F3 1742 aaKnown RBP9.76□□□□□ -0.85
SYNE1-209ENST00000367257 SLC30A9Q6PML9 568 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 FBXO41Q8TF61 875 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 EPSTI1Q96J88 318 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 SERPINA10Q9UK55 444 aa9.76□□□□□ -0.85
SYNE1-209ENST00000367257 KCNJ18B7U540 433 aa9.75□□□□□ -0.85
SYNE1-209ENST00000367257 KCNJ12Q14500 433 aa9.75□□□□□ -0.85
SYNE1-209ENST00000367257 CDC37Q16543 378 aaPredicted RBP9.75□□□□□ -0.85
SYNE1-209ENST00000367257 CHURC1Q8WUH1 139 aa9.75□□□□□ -0.85
SYNE1-209ENST00000367257 CARD10Q9BWT7 1032 aa9.75□□□□□ -0.85
SYNE1-209ENST00000367257 BATF3Q9NR55 127 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms