RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 DIXDC1Q155Q3 683 aa13.61□□□□□ -0.23
CLIP3-201ENST00000360535 KRT26Q7Z3Y9 468 aa13.61□□□□□ -0.23
CLIP3-201ENST00000360535 LCMT1Q9UIC8 334 aa13.61□□□□□ -0.23
CLIP3-201ENST00000360535 KDM4FA0A1W2PPD8 638 aa13.61□□□□□ -0.23
CLIP3-201ENST00000360535 TSPY3P0CV98 308 aa13.61□□□□□ -0.23
CLIP3-201ENST00000360535 TSPY8P0CW00 308 aa13.61□□□□□ -0.23
CLIP3-201ENST00000360535 FCER1AP12319 257 aa13.61□□□□□ -0.23
CLIP3-201ENST00000360535 RCAN1P53805 252 aa13.61□□□□□ -0.23
CLIP3-201ENST00000360535 UBE4AQ14139 1066 aa13.61□□□□□ -0.23
CLIP3-201ENST00000360535 FOXR1Q6PIV2 292 aa13.61□□□□□ -0.23
CLIP3-201ENST00000360535 L1RE1Q9UN81 338 aa13.61□□□□□ -0.23
CLIP3-201ENST00000360535 NID2Q14112 1375 aa13.61□□□□□ -0.23
CLIP3-201ENST00000360535 SHANK3Q9BYB0 1731 aa13.6□□□□□ -0.23
CLIP3-201ENST00000360535 SEMA3EO15041 775 aa13.6□□□□□ -0.23
CLIP3-201ENST00000360535 CCNT1O60563 726 aaKnown RBP13.6□□□□□ -0.23
CLIP3-201ENST00000360535 JAKMIP2Q96AA8 810 aa13.6□□□□□ -0.23
CLIP3-201ENST00000360535 TUBGCP2Q9BSJ2 902 aa13.6□□□□□ -0.23
CLIP3-201ENST00000360535 LACRTQ9GZZ8 138 aa13.6□□□□□ -0.23
CLIP3-201ENST00000360535 ZNHIT6Q9NWK9 470 aaKnown RBP13.6□□□□□ -0.23
CLIP3-201ENST00000360535 PAPPAQ13219 1627 aa13.6□□□□□ -0.23
CLIP3-201ENST00000360535 H7C1D1 291 aa13.6□□□□□ -0.23
CLIP3-201ENST00000360535 MAP2K7O14733 419 aa13.6□□□□□ -0.23
CLIP3-201ENST00000360535 TECP42680 631 aa13.6□□□□□ -0.23
CLIP3-201ENST00000360535 ANKRD13CQ8N6S4 541 aa13.6□□□□□ -0.23
CLIP3-201ENST00000360535 MTA3Q9BTC8 594 aa13.6□□□□□ -0.23
CLIP3-201ENST00000360535 UBXN6Q9BZV1 441 aa13.6□□□□□ -0.23
CLIP3-201ENST00000360535 ZNF652Q9Y2D9 606 aa13.6□□□□□ -0.23
CLIP3-201ENST00000360535 POTEB2H3BUK9 544 aa13.6□□□□□ -0.23
CLIP3-201ENST00000360535 ENOX2Q16206 610 aaKnown RBP13.6□□□□□ -0.23
CLIP3-201ENST00000360535 WHAMMP3Q1A5X7 153 aa13.6□□□□□ -0.23
CLIP3-201ENST00000360535 MAPKAPK5Q8IW41 473 aa13.6□□□□□ -0.23
CLIP3-201ENST00000360535 TGFBRAP1Q8WUH2 860 aa13.6□□□□□ -0.23
CLIP3-201ENST00000360535 SLC39A2Q9NP94 309 aa13.6□□□□□ -0.23
CLIP3-201ENST00000360535 SRP68Q9UHB9 627 aaKnown RBP13.6□□□□□ -0.23
CLIP3-201ENST00000360535 SAR1BQ9Y6B6 198 aa13.6□□□□□ -0.23
CLIP3-201ENST00000360535 COL4A1P02462 1669 aa13.6□□□□□ -0.23
CLIP3-201ENST00000360535 PLEKP08567 350 aaPredicted RBP13.59□□□□□ -0.23
CLIP3-201ENST00000360535 PLCG1P19174 1290 aa13.59□□□□□ -0.23
CLIP3-201ENST00000360535 CALML3P27482 149 aa13.59□□□□□ -0.23
CLIP3-201ENST00000360535 HERVK_113P62684 666 aa13.59□□□□□ -0.23
CLIP3-201ENST00000360535 NAALADL2Q58DX5 795 aa13.59□□□□□ -0.23
CLIP3-201ENST00000360535 RCSD1Q6JBY9 416 aa13.59□□□□□ -0.23
CLIP3-201ENST00000360535 DYMQ7RTS9 669 aa13.59□□□□□ -0.23
CLIP3-201ENST00000360535 ZNF444Q8N0Y2 327 aaPredicted RBP13.59□□□□□ -0.23
CLIP3-201ENST00000360535 ADSSL1Q8N142 457 aa13.59□□□□□ -0.23
CLIP3-201ENST00000360535 FAM207AQ9NSI2 230 aaPredicted RBP13.59□□□□□ -0.23
CLIP3-201ENST00000360535 PCDHA4Q9UN74 947 aa13.59□□□□□ -0.23
CLIP3-201ENST00000360535 RCCD1A6NED2 376 aa13.59□□□□□ -0.23
CLIP3-201ENST00000360535 IDEP14735 1019 aa13.59□□□□□ -0.23
CLIP3-201ENST00000360535 CXCR5P32302 372 aa13.59□□□□□ -0.23
CLIP3-201ENST00000360535 LONP1P36776 959 aaKnown RBP13.59□□□□□ -0.23
CLIP3-201ENST00000360535 NAPAP54920 295 aa13.59□□□□□ -0.23
CLIP3-201ENST00000360535 NAP1L1P55209 391 aaKnown RBP13.59□□□□□ -0.23
CLIP3-201ENST00000360535 RPS8P62241 208 aaKnown RBP13.59□□□□□ -0.23
CLIP3-201ENST00000360535 C2orf54Q08AI8 447 aa13.59□□□□□ -0.23
CLIP3-201ENST00000360535 CCDC96Q2M329 555 aa13.59□□□□□ -0.23
CLIP3-201ENST00000360535 NOC4LQ9BVI4 516 aaKnown RBP13.59□□□□□ -0.23
CLIP3-201ENST00000360535 IL17RBQ9NRM6 502 aa13.59□□□□□ -0.23
CLIP3-201ENST00000360535 TMEM51Q9NW97 253 aa13.59□□□□□ -0.23
CLIP3-201ENST00000360535 ANKIB1Q9P2G1 1089 aa13.59□□□□□ -0.23
CLIP3-201ENST00000360535 RSPH14Q9UHP6 348 aa13.59□□□□□ -0.23
CLIP3-201ENST00000360535 ITIH6Q6UXX5 1313 aa13.59□□□□□ -0.23
CLIP3-201ENST00000360535 GOLGB1Q14789 3259 aaKnown RBP13.59□□□□□ -0.23
CLIP3-201ENST00000360535 PPARDQ03181 441 aa13.58□□□□□ -0.23
CLIP3-201ENST00000360535 GOLGA6L1Q8N7Z2 621 aa13.58□□□□□ -0.23
CLIP3-201ENST00000360535 LRRC15Q8TF66 581 aa13.58□□□□□ -0.23
CLIP3-201ENST00000360535 EXOC1Q9NV70 894 aa13.58□□□□□ -0.23
CLIP3-201ENST00000360535 BSDC1Q9NW68 430 aaPredicted RBP13.58□□□□□ -0.23
CLIP3-201ENST00000360535 SMARCAL1Q9NZC9 954 aa13.58□□□□□ -0.23
CLIP3-201ENST00000360535 LGALS16A8MUM7 142 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 STK4Q13043 487 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 TXNRD1Q16881 649 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 TBC1D9BQ66K14 1250 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 ANKRD40Q6AI12 368 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 WDR59Q6PJI9 974 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 CABP7Q86V35 215 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 MSANTD4Q8NCY6 345 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 MMRN2Q9H8L6 949 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 FAM204AQ9H8W3 233 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 TCP11L1Q9NUJ3 509 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 PCDHA6Q9UN73 950 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.58□□□□□ -0.24
CLIP3-201ENST00000360535 PCDHA8Q9Y5H6 950 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 ZNF804BA4D1E1 1349 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 LRRC10BA6NIK2 292 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 ZPR1O75312 459 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 TXKP42681 527 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 TRIM14Q14142 442 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 CT47A1Q5JQC4 288 aaPredicted RBP13.58□□□□□ -0.24
CLIP3-201ENST00000360535 NBPF5PQ86XG9 351 aaPredicted RBP13.58□□□□□ -0.24
CLIP3-201ENST00000360535 SH3RF3Q8TEJ3 882 aaPredicted RBP13.58□□□□□ -0.24
CLIP3-201ENST00000360535 EXOC4Q96A65 974 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 CNOT6LQ96LI5 555 aaKnown RBP13.58□□□□□ -0.24
CLIP3-201ENST00000360535 UBA5Q9GZZ9 404 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 DEF6Q9H4E7 631 aa13.58□□□□□ -0.24
CLIP3-201ENST00000360535 NHEJ1Q9H9Q4 299 aaPredicted RBP13.58□□□□□ -0.24
CLIP3-201ENST00000360535 BIN2Q9UBW5 565 aaPredicted RBP13.58□□□□□ -0.24
CLIP3-201ENST00000360535 USP17L2Q6R6M4 530 aa13.57□□□□□ -0.24
CLIP3-201ENST00000360535 MARCH10Q8NA82 808 aaPredicted RBP13.57□□□□□ -0.24
CLIP3-201ENST00000360535 RAB21Q9UL25 225 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms