RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 ANO1Q5XXA6 986 aa21.35■■□□□ 1.01
CLN3-206ENST00000360019 PPP1R18Q6NYC8 613 aa21.35■■□□□ 1.01
CLN3-206ENST00000360019 FAM160B2Q86V87 743 aa21.35■■□□□ 1.01
CLN3-206ENST00000360019 LINC00301Q8NCQ3 95 aa21.35■■□□□ 1.01
CLN3-206ENST00000360019 KIFC2Q96AC6 838 aa21.35■■□□□ 1.01
CLN3-206ENST00000360019 ANP32EQ9BTT0 268 aa21.35■■□□□ 1.01
CLN3-206ENST00000360019 C6orf50Q9HD87 102 aa21.35■■□□□ 1.01
CLN3-206ENST00000360019 PCDHA6Q9UN73 950 aa21.35■■□□□ 1.01
CLN3-206ENST00000360019 PCDHA8Q9Y5H6 950 aa21.35■■□□□ 1.01
CLN3-206ENST00000360019 DDX49Q9Y6V7 483 aaKnown RBP21.35■■□□□ 1.01
CLN3-206ENST00000360019 SKOR2Q2VWA4 1001 aaPredicted RBP21.34■■□□□ 1.01
CLN3-206ENST00000360019 RILPL1Q5EBL4 403 aa21.34■■□□□ 1.01
CLN3-206ENST00000360019 CNKSR2Q8WXI2 1034 aa21.34■■□□□ 1.01
CLN3-206ENST00000360019 CLMNQ96JQ2 1002 aa21.34■■□□□ 1.01
CLN3-206ENST00000360019 YEATS4O95619 227 aa21.34■■□□□ 1.01
CLN3-206ENST00000360019 GNA11P29992 359 aa21.34■■□□□ 1.01
CLN3-206ENST00000360019 HMGCS2P54868 508 aa21.34■■□□□ 1.01
CLN3-206ENST00000360019 UBE2HP62256 183 aa21.34■■□□□ 1.01
CLN3-206ENST00000360019 TTLL12Q14166 644 aaPredicted RBP21.34■■□□□ 1.01
CLN3-206ENST00000360019 SF3A1Q15459 793 aaKnown RBP21.34■■□□□ 1.01
CLN3-206ENST00000360019 KLHL40Q2TBA0 621 aa21.34■■□□□ 1.01
CLN3-206ENST00000360019 PIK3AP1Q6ZUJ8 805 aa21.34■■□□□ 1.01
CLN3-206ENST00000360019 LDHDQ86WU2 507 aa21.34■■□□□ 1.01
CLN3-206ENST00000360019 ANKRD13AQ8IZ07 590 aa21.34■■□□□ 1.01
CLN3-206ENST00000360019 ZNF526Q8TF50 670 aaPredicted RBP21.34■■□□□ 1.01
CLN3-206ENST00000360019 C12orf42Q96LP6 360 aa21.34■■□□□ 1.01
CLN3-206ENST00000360019 RANBP17Q9H2T7 1088 aaKnown RBP21.34■■□□□ 1.01
CLN3-206ENST00000360019 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.34■■□□□ 1.01
CLN3-206ENST00000360019 C19orf81C9J6K1 198 aa21.33■■□□□ 1.01
CLN3-206ENST00000360019 PGBD1Q96JS3 809 aa21.33■■□□□ 1.01
CLN3-206ENST00000360019 AMNQ9BXJ7 453 aa21.33■■□□□ 1.01
CLN3-206ENST00000360019 PCDHA1Q9Y5I3 950 aa21.33■■□□□ 1.01
CLN3-206ENST00000360019 FBXO11Q86XK2 927 aa21.32■■□□□ 1
CLN3-206ENST00000360019 RPAP3Q9H6T3 665 aaPredicted RBP21.32■■□□□ 1
CLN3-206ENST00000360019 ELP3Q9H9T3 547 aa21.32■■□□□ 1
CLN3-206ENST00000360019 WNT7AO00755 349 aa21.32■■□□□ 1
CLN3-206ENST00000360019 TAL1P17542 331 aaPredicted RBP21.32■■□□□ 1
CLN3-206ENST00000360019 ADCY7P51828 1080 aa21.32■■□□□ 1
CLN3-206ENST00000360019 PTPAQ15257 358 aa21.32■■□□□ 1
CLN3-206ENST00000360019 TPRNQ4KMQ1 711 aa21.32■■□□□ 1
CLN3-206ENST00000360019 SLF1Q9BQI6 1058 aa21.32■■□□□ 1
CLN3-206ENST00000360019 TANGO6Q9C0B7 1094 aa21.32■■□□□ 1
CLN3-206ENST00000360019 PCDHB6Q9Y5E3 794 aa21.32■■□□□ 1
CLN3-206ENST00000360019 SLC39A14Q15043 492 aa21.31■■□□□ 1
CLN3-206ENST00000360019 STK38Q15208 465 aa21.31■■□□□ 1
CLN3-206ENST00000360019 USH1GQ495M9 461 aa21.31■■□□□ 1
CLN3-206ENST00000360019 SAMD1Q6SPF0 538 aaPredicted RBP21.31■■□□□ 1
CLN3-206ENST00000360019 ARMC9Q7Z3E5 817 aa21.31■■□□□ 1
CLN3-206ENST00000360019 RIC8AQ9NPQ8 531 aa21.31■■□□□ 1
CLN3-206ENST00000360019 MBD3O95983 291 aa21.3■■□□□ 1
CLN3-206ENST00000360019 ATP2B1P20020 1258 aa21.3■■□□□ 1
CLN3-206ENST00000360019 SH3D19Q5HYK7 790 aa21.3■■□□□ 1
CLN3-206ENST00000360019 REXO1Q8N1G1 1221 aaKnown RBP21.3■■□□□ 1
CLN3-206ENST00000360019 PRPF38AQ8NAV1 312 aaKnown RBP21.3■■□□□ 1
CLN3-206ENST00000360019 BICD2Q8TD16 824 aa21.3■■□□□ 1
CLN3-206ENST00000360019 ZNF408Q9H9D4 720 aa21.3■■□□□ 1
CLN3-206ENST00000360019 SPTLC2O15270 562 aa21.29■■□□□ 1
CLN3-206ENST00000360019 FLOT1O75955 427 aa21.29■■□□□ 1
CLN3-206ENST00000360019 PPATQ06203 517 aa21.29■■□□□ 1
CLN3-206ENST00000360019 LDLRAD1Q5T700 205 aa21.29■■□□□ 1
CLN3-206ENST00000360019 CCDC174Q6PII3 467 aa21.29■■□□□ 1
CLN3-206ENST00000360019 ERO1BQ86YB8 467 aa21.29■■□□□ 1
CLN3-206ENST00000360019 RBM46Q8TBY0 533 aaKnown RBP21.29■■□□□ 1
CLN3-206ENST00000360019 KCNG4Q8TDN1 519 aa21.29■■□□□ 1
CLN3-206ENST00000360019 BIN2Q9UBW5 565 aaPredicted RBP21.29■■□□□ 1
CLN3-206ENST00000360019 NOL7Q9UMY1 257 aaKnown RBP21.29■■□□□ 1
CLN3-206ENST00000360019 PTPRFP10586 1907 aa21.29■■□□□ 1
CLN3-206ENST00000360019 CCDC194A0A1B0GVG4 234 aa21.29■■□□□ 1
CLN3-206ENST00000360019 SPDYE5A6NIY4 337 aa21.29■■□□□ 1
CLN3-206ENST00000360019 CUL5Q93034 780 aa21.29■■□□□ 1
CLN3-206ENST00000360019 OTUD5Q96G74 571 aa21.29■■□□□ 1
CLN3-206ENST00000360019 PSTPIP2Q9H939 334 aa21.29■■□□□ 1
CLN3-206ENST00000360019 TMEM260Q9NX78 707 aa21.29■■□□□ 1
CLN3-206ENST00000360019 PPP1R9AQ9ULJ8 1098 aa21.29■■□□□ 1
CLN3-206ENST00000360019 SMCHD1A6NHR9 2005 aa21.28■■□□□ 1
CLN3-206ENST00000360019 IRF6O14896 467 aa21.28■■□□□ 1
CLN3-206ENST00000360019 ME1P48163 572 aa21.28■■□□□ 1
CLN3-206ENST00000360019 TRAPPC10P48553 1259 aa21.28■■□□□ 1
CLN3-206ENST00000360019 CLK2P49760 499 aaKnown RBP21.28■■□□□ 1
CLN3-206ENST00000360019 UBE2SQ16763 222 aa21.28■■□□□ 1
CLN3-206ENST00000360019 JAKMIP3Q5VZ66 844 aa21.28■■□□□ 1
CLN3-206ENST00000360019 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.28■■□□□ 1
CLN3-206ENST00000360019 TMOD4Q9NZQ9 345 aa21.28■■□□□ 1
CLN3-206ENST00000360019 PCDHA7Q9UN72 937 aa21.28■■□□□ 1
CLN3-206ENST00000360019 PARP14Q460N5 1801 aa21.28■■□□□ 1
CLN3-206ENST00000360019 MARCKSP29966 332 aaPredicted RBP21.27■■□□□ 1
CLN3-206ENST00000360019 TTC38Q5R3I4 469 aa21.27■■□□□ 1
CLN3-206ENST00000360019 KRT25Q7Z3Z0 450 aa21.27■■□□□ 1
CLN3-206ENST00000360019 ZNF536O15090 1300 aa21.27■■□□□ 1
CLN3-206ENST00000360019 OPLAHO14841 1288 aa21.27■□□□□ 0.99
CLN3-206ENST00000360019 MRPL12P52815 198 aaKnown RBP21.27■□□□□ 0.99
CLN3-206ENST00000360019 INF2Q27J81 1249 aa21.27■□□□□ 0.99
CLN3-206ENST00000360019 RLFQ13129 1914 aa21.26■□□□□ 0.99
CLN3-206ENST00000360019 GOLGA6L4A6NEF3 574 aa21.26■□□□□ 0.99
CLN3-206ENST00000360019 PPP6R2O75170 966 aa21.26■□□□□ 0.99
CLN3-206ENST00000360019 NONOQ15233 471 aaKnown RBP eCLIP21.26■□□□□ 0.99
CLN3-206ENST00000360019 SLC38A10Q9HBR0 1119 aa21.26■□□□□ 0.99
CLN3-206ENST00000360019 USP17L15C9J2P7 530 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 USP17L13C9JLJ4 530 aa21.25■□□□□ 0.99
CLN3-206ENST00000360019 USP17L11C9JVI0 530 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms