RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 STAG1Q8WVM7 1258 aa17.15■□□□□ 0.34
PRPF40A-201ENST00000354363 CHMP4CQ96CF2 233 aa17.15■□□□□ 0.34
PRPF40A-201ENST00000354363 EVI5LQ96CN4 794 aa17.15■□□□□ 0.34
PRPF40A-201ENST00000354363 IL17RBQ9NRM6 502 aa17.15■□□□□ 0.34
PRPF40A-201ENST00000354363 HOMER2Q9NSB8 354 aa17.15■□□□□ 0.34
PRPF40A-201ENST00000354363 ZNF536O15090 1300 aa17.15■□□□□ 0.34
PRPF40A-201ENST00000354363 MYADML2A6NDP7 307 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 TSPY2A6NKD2 308 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 ITGB8P26012 769 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 ACLYP53396 1101 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 CCSAPQ6IQ19 270 aaPredicted RBP17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 ARMCX2Q7L311 632 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 ABHD16BQ9H3Z7 469 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 ACAD9Q9H845 621 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 ANAPC4Q9UJX5 808 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 STX8Q9UNK0 236 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 LRRC37A2A6NM11 1700 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 MOXD2PA6NHM9 499 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 ADCY6O43306 1168 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 NMT2O60551 498 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 PLA2G6O60733 806 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 PQBP1O60828 265 aaKnown RBP17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 PDE1AP54750 535 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 CNTN2Q02246 1040 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 IKQ13123 557 aaPredicted RBP17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 KCNA10Q16322 511 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 KCTD1Q719H9 257 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 AGBL1Q96MI9 1066 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 STARD7Q9NQZ5 370 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 HELLSQ9NRZ9 838 aa17.14■□□□□ 0.33
PRPF40A-201ENST00000354363 KIAA0355O15063 1070 aa17.13■□□□□ 0.33
PRPF40A-201ENST00000354363 CST5P28325 142 aaPredicted RBP17.13■□□□□ 0.33
PRPF40A-201ENST00000354363 IRX5P78411 483 aaPredicted RBP17.13■□□□□ 0.33
PRPF40A-201ENST00000354363 HDAC1Q13547 482 aaPredicted RBP17.13■□□□□ 0.33
PRPF40A-201ENST00000354363 ALX1Q15699 326 aa17.13■□□□□ 0.33
PRPF40A-201ENST00000354363 CCDC144BQ3MJ40 725 aa17.13■□□□□ 0.33
PRPF40A-201ENST00000354363 RCSD1Q6JBY9 416 aa17.13■□□□□ 0.33
PRPF40A-201ENST00000354363 FAM133AQ8N9E0 248 aa17.13■□□□□ 0.33
PRPF40A-201ENST00000354363 NUP133Q8WUM0 1156 aa17.13■□□□□ 0.33
PRPF40A-201ENST00000354363 GUCD1Q96NT3 240 aa17.13■□□□□ 0.33
PRPF40A-201ENST00000354363 KATNBL1Q9H079 304 aa17.13■□□□□ 0.33
PRPF40A-201ENST00000354363 RNF146Q9NTX7 359 aa17.13■□□□□ 0.33
PRPF40A-201ENST00000354363 ORC4O43929 436 aa17.12■□□□□ 0.33
PRPF40A-201ENST00000354363 RANBP6O60518 1105 aaKnown RBP17.12■□□□□ 0.33
PRPF40A-201ENST00000354363 NOVP48745 357 aa17.12■□□□□ 0.33
PRPF40A-201ENST00000354363 TKFCQ3LXA3 575 aa17.12■□□□□ 0.33
PRPF40A-201ENST00000354363 RASGRP2Q7LDG7 609 aa17.12■□□□□ 0.33
PRPF40A-201ENST00000354363 ANKRD33Q7Z3H0 272 aa17.12■□□□□ 0.33
PRPF40A-201ENST00000354363 CCDC144CPQ8IYA2 1237 aa17.12■□□□□ 0.33
PRPF40A-201ENST00000354363 TOX2Q96NM4 488 aa17.12■□□□□ 0.33
PRPF40A-201ENST00000354363 UPF3AQ9H1J1 476 aaKnown RBP17.12■□□□□ 0.33
PRPF40A-201ENST00000354363 A1CFQ9NQ94 594 aaKnown RBP17.12■□□□□ 0.33
PRPF40A-201ENST00000354363 FGRP09769 529 aa17.11■□□□□ 0.33
PRPF40A-201ENST00000354363 C6orf222P0C671 652 aaPredicted RBP17.11■□□□□ 0.33
PRPF40A-201ENST00000354363 GJA9P57773 515 aa17.11■□□□□ 0.33
PRPF40A-201ENST00000354363 SNAP25P60880 206 aa17.11■□□□□ 0.33
PRPF40A-201ENST00000354363 FAAP100Q0VG06 881 aa17.11■□□□□ 0.33
PRPF40A-201ENST00000354363 ZNF697Q5TEC3 545 aa17.11■□□□□ 0.33
PRPF40A-201ENST00000354363 FAM227BQ96M60 508 aa17.11■□□□□ 0.33
PRPF40A-201ENST00000354363 FAM161BQ96MY7 647 aa17.11■□□□□ 0.33
PRPF40A-201ENST00000354363 TRERF1Q96PN7 1200 aa17.11■□□□□ 0.33
PRPF40A-201ENST00000354363 TMEM39AQ9NV64 488 aa17.11■□□□□ 0.33
PRPF40A-201ENST00000354363 PRR12Q9ULL5 1215 aa17.11■□□□□ 0.33
PRPF40A-201ENST00000354363 A0A0D9SFI3 127 aa17.1■□□□□ 0.33
PRPF40A-201ENST00000354363 DCDC2CA8MYV0 355 aa17.1■□□□□ 0.33
PRPF40A-201ENST00000354363 ALAS1P13196 640 aa17.1■□□□□ 0.33
PRPF40A-201ENST00000354363 RAG1P15918 1043 aa17.1■□□□□ 0.33
PRPF40A-201ENST00000354363 CCDC174Q6PII3 467 aa17.1■□□□□ 0.33
PRPF40A-201ENST00000354363 PCSK9Q8NBP7 692 aaKnown RBP17.1■□□□□ 0.33
PRPF40A-201ENST00000354363 SPC25Q9HBM1 224 aa17.1■□□□□ 0.33
PRPF40A-201ENST00000354363 MTMR7Q9Y216 660 aa17.1■□□□□ 0.33
PRPF40A-201ENST00000354363 SOWAHBA6NEL2 793 aa17.1■□□□□ 0.33
PRPF40A-201ENST00000354363 DLL1O00548 723 aa17.1■□□□□ 0.33
PRPF40A-201ENST00000354363 FGAP02671 866 aa17.1■□□□□ 0.33
PRPF40A-201ENST00000354363 ASGR1P07306 291 aa17.1■□□□□ 0.33
PRPF40A-201ENST00000354363 EPHB4P54760 987 aa17.1■□□□□ 0.33
PRPF40A-201ENST00000354363 MCMDC2Q4G0Z9 681 aa17.1■□□□□ 0.33
PRPF40A-201ENST00000354363 GLT1D1Q96MS3 346 aa17.1■□□□□ 0.33
PRPF40A-201ENST00000354363 ELP1O95163 1332 aa17.09■□□□□ 0.33
PRPF40A-201ENST00000354363 A0A0C4DFX4 3053 aa17.09■□□□□ 0.33
PRPF40A-201ENST00000354363 CTAGE5O15320 804 aa17.09■□□□□ 0.33
PRPF40A-201ENST00000354363 SMAD3P84022 425 aaKnown RBP17.09■□□□□ 0.33
PRPF40A-201ENST00000354363 MUM1L1Q5H9M0 696 aa17.09■□□□□ 0.33
PRPF40A-201ENST00000354363 DCAF4Q8WV16 495 aa17.09■□□□□ 0.33
PRPF40A-201ENST00000354363 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.08■□□□□ 0.32
PRPF40A-201ENST00000354363 ASB14A6NK59 587 aa17.08■□□□□ 0.32
PRPF40A-201ENST00000354363 HSPD1P10809 573 aaKnown RBP17.08■□□□□ 0.32
PRPF40A-201ENST00000354363 CDK7P50613 346 aa17.08■□□□□ 0.32
PRPF40A-201ENST00000354363 NKX3-2P78367 333 aa17.08■□□□□ 0.32
PRPF40A-201ENST00000354363 FPGSQ05932 587 aa17.08■□□□□ 0.32
PRPF40A-201ENST00000354363 CCDC96Q2M329 555 aa17.08■□□□□ 0.32
PRPF40A-201ENST00000354363 GNASQ5JWF2 1037 aa17.08■□□□□ 0.32
PRPF40A-201ENST00000354363 ZNF589Q86UQ0 364 aaPredicted RBP17.08■□□□□ 0.32
PRPF40A-201ENST00000354363 TICAM2Q86XR7 235 aa17.08■□□□□ 0.32
PRPF40A-201ENST00000354363 TOMM22Q9NS69 142 aa17.08■□□□□ 0.32
PRPF40A-201ENST00000354363 ASTN1O14525 1302 aa17.08■□□□□ 0.32
PRPF40A-201ENST00000354363 MROH7Q68CQ1 1323 aa17.08■□□□□ 0.32
PRPF40A-201ENST00000354363 LAMA4Q16363 1823 aa17.08■□□□□ 0.32
PRPF40A-201ENST00000354363 NMIQ13287 307 aaPredicted RBP17.07■□□□□ 0.32
PRPF40A-201ENST00000354363 RRP12Q5JTH9 1297 aaKnown RBP17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms