RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 FAM207AQ9NSI2 230 aaPredicted RBP16.53■□□□□ 0.24
COL17A1-201ENST00000353479 PLEKHG2Q9H7P9 1386 aa16.53■□□□□ 0.24
COL17A1-201ENST00000353479 LRMPQ12912 555 aa16.52■□□□□ 0.24
COL17A1-201ENST00000353479 CCDC155Q8N6L0 562 aa16.52■□□□□ 0.24
COL17A1-201ENST00000353479 TBCKQ8TEA7 893 aa16.52■□□□□ 0.24
COL17A1-201ENST00000353479 KIAA1024Q9UPX6 916 aa16.52■□□□□ 0.24
COL17A1-201ENST00000353479 NR5A1Q13285 461 aa16.52■□□□□ 0.24
COL17A1-201ENST00000353479 IWS1Q96ST2 819 aa16.52■□□□□ 0.24
COL17A1-201ENST00000353479 IFNAR1P17181 557 aa16.52■□□□□ 0.24
COL17A1-201ENST00000353479 LINC00116Q8NCU8 138 aa16.52■□□□□ 0.24
COL17A1-201ENST00000353479 RPAP1Q9BWH6 1393 aaPredicted RBP16.52■□□□□ 0.23
COL17A1-201ENST00000353479 TRIM28Q13263 835 aaKnown RBP16.52■□□□□ 0.23
COL17A1-201ENST00000353479 FAM178BQ8IXR5 827 aa16.52■□□□□ 0.23
COL17A1-201ENST00000353479 ZNF577Q9BSK1 485 aa16.52■□□□□ 0.23
COL17A1-201ENST00000353479 SLC39A2Q9NP94 309 aa16.52■□□□□ 0.23
COL17A1-201ENST00000353479 GTPBP6O43824 516 aaPredicted RBP16.52■□□□□ 0.23
COL17A1-201ENST00000353479 GH2P01242 217 aa16.52■□□□□ 0.23
COL17A1-201ENST00000353479 LIFRP42702 1097 aa16.52■□□□□ 0.23
COL17A1-201ENST00000353479 IREB2P48200 963 aaKnown RBP16.52■□□□□ 0.23
COL17A1-201ENST00000353479 IGBP1P78318 339 aa16.52■□□□□ 0.23
COL17A1-201ENST00000353479 DDX12PQ92771 950 aa16.52■□□□□ 0.23
COL17A1-201ENST00000353479 MMP1P03956 469 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 CD19P15391 556 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 ARHGAP44Q17R89 818 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 GRIPAP1Q4V328 841 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 SEL1L2Q5TEA6 688 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 ZBTB8OSQ8IWT0 167 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 MAK16Q9BXY0 300 aaKnown RBP16.51■□□□□ 0.23
COL17A1-201ENST00000353479 LIG4P49917 911 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 SNAP25P60880 206 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 SLC39A14Q15043 492 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 LIN9Q5TKA1 542 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 TBC1D10CQ8IV04 446 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 INCENPQ9NQS7 918 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 SPATA31A5Q5VU36 1347 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 SPATA31A7Q8IWB4 1347 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 TRAPPC10P48553 1259 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 KIF23Q02241 960 aaPredicted RBP16.51■□□□□ 0.23
COL17A1-201ENST00000353479 LONRF3Q496Y0 759 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 TSNARE1Q96NA8 513 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 ZNF341Q9BYN7 854 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 NLRC4Q9NPP4 1024 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 PRPF3O43395 683 aaKnown RBP16.51■□□□□ 0.23
COL17A1-201ENST00000353479 PRPF6O94906 941 aaKnown RBP16.51■□□□□ 0.23
COL17A1-201ENST00000353479 RPN1P04843 607 aaKnown RBP16.51■□□□□ 0.23
COL17A1-201ENST00000353479 BCRP11274 1271 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 CHRNA5P30532 468 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 MORC3Q14149 939 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 CDC37Q16543 378 aaPredicted RBP16.51■□□□□ 0.23
COL17A1-201ENST00000353479 CCDC84Q86UT8 332 aaPredicted RBP16.51■□□□□ 0.23
COL17A1-201ENST00000353479 JAKMIP2Q96AA8 810 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 CCDC114Q96M63 670 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 ARFGAP3Q9NP61 516 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 RABGAP1Q9Y3P9 1069 aa16.51■□□□□ 0.23
COL17A1-201ENST00000353479 POLGP54098 1239 aaPredicted RBP16.5■□□□□ 0.23
COL17A1-201ENST00000353479 SEPT14Q6ZU15 432 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 KLHL30Q0D2K2 578 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 BMS1Q14692 1282 aaKnown RBP16.5■□□□□ 0.23
COL17A1-201ENST00000353479 XPO4Q9C0E2 1151 aaKnown RBP16.5■□□□□ 0.23
COL17A1-201ENST00000353479 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.5■□□□□ 0.23
COL17A1-201ENST00000353479 MYO3BQ8WXR4 1341 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 KCNJ18B7U540 433 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 GNA14O95837 355 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 RHOXF2BP0C7M4 288 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 XRCC5P13010 732 aaKnown RBP16.5■□□□□ 0.23
COL17A1-201ENST00000353479 KCNJ12Q14500 433 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 PPP1R7Q15435 360 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 BARGINQ6ZT62 677 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 STAG1Q8WVM7 1258 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 AIFM3Q96NN9 605 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 RHOXF2Q9BQY4 288 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 MTUS1Q9ULD2 1270 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 COL4A3BPQ9Y5P4 624 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 FAM196BA6NMK8 535 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 UBE2SQ16763 222 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 TMEM179Q6ZVK1 233 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 NOX5Q96PH1 765 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 NEDD4P46934 1319 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 ATP2A1O14983 1001 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 OTUD6BQ8N6M0 293 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 RNF169Q8NCN4 708 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 IFT81Q8WYA0 676 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 RNF34Q969K3 372 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 FAM84BQ96KN1 310 aaPredicted RBP16.5■□□□□ 0.23
COL17A1-201ENST00000353479 NRBP2Q9NSY0 501 aa16.5■□□□□ 0.23
COL17A1-201ENST00000353479 FAM170AA1A519 330 aa16.49■□□□□ 0.23
COL17A1-201ENST00000353479 hCG_1984214I3L0E3 225 aa16.49■□□□□ 0.23
COL17A1-201ENST00000353479 PLEKHA8P1O95397 391 aa16.49■□□□□ 0.23
COL17A1-201ENST00000353479 MCM6Q14566 821 aa16.49■□□□□ 0.23
COL17A1-201ENST00000353479 SP8Q8IXZ3 490 aa16.49■□□□□ 0.23
COL17A1-201ENST00000353479 ZNF713Q8N859 430 aaPredicted RBP16.49■□□□□ 0.23
COL17A1-201ENST00000353479 FTOQ9C0B1 505 aaKnown RBP eCLIP16.49■□□□□ 0.23
COL17A1-201ENST00000353479 LARSQ9P2J5 1176 aaKnown RBP16.49■□□□□ 0.23
COL17A1-201ENST00000353479 PSDA5PKW4 1024 aaPredicted RBP16.49■□□□□ 0.23
COL17A1-201ENST00000353479 LAD1O00515 517 aa16.49■□□□□ 0.23
COL17A1-201ENST00000353479 RC3H1Q5TC82 1133 aaKnown RBP16.49■□□□□ 0.23
COL17A1-201ENST00000353479 SFMBT2Q5VUG0 894 aa16.49■□□□□ 0.23
COL17A1-201ENST00000353479 RRAGAQ7L523 313 aa16.49■□□□□ 0.23
COL17A1-201ENST00000353479 AGTPBP1Q9UPW5 1226 aa16.49■□□□□ 0.23
COL17A1-201ENST00000353479 A0A1W2PRG0 241 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms