RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 PKN1Q16512 942 aa10.6□□□□□ -0.71
USP4-202ENST00000351842 LDLRAD1Q5T700 205 aa10.6□□□□□ -0.71
USP4-202ENST00000351842 SPRYD7Q5W111 196 aa10.6□□□□□ -0.71
USP4-202ENST00000351842 FBXO11Q86XK2 927 aa10.6□□□□□ -0.71
USP4-202ENST00000351842 KIF3AQ9Y496 699 aa10.6□□□□□ -0.71
USP4-202ENST00000351842 DNM1Q05193 864 aaKnown RBP10.59□□□□□ -0.71
USP4-202ENST00000351842 DEFB115Q30KQ5 88 aa10.59□□□□□ -0.71
USP4-202ENST00000351842 EEPD1Q7L9B9 569 aa10.59□□□□□ -0.71
USP4-202ENST00000351842 PRPF38AQ8NAV1 312 aaKnown RBP10.59□□□□□ -0.71
USP4-202ENST00000351842 DCAF4Q8WV16 495 aa10.59□□□□□ -0.71
USP4-202ENST00000351842 MKL1Q969V6 931 aa10.59□□□□□ -0.71
USP4-202ENST00000351842 WDR90Q96KV7 1748 aa10.59□□□□□ -0.71
USP4-202ENST00000351842 KIF28PB7ZC32 967 aa10.59□□□□□ -0.71
USP4-202ENST00000351842 NFIBO00712 420 aa10.59□□□□□ -0.71
USP4-202ENST00000351842 TRPA1O75762 1119 aa10.59□□□□□ -0.71
USP4-202ENST00000351842 XBP1P17861 261 aa10.59□□□□□ -0.71
USP4-202ENST00000351842 TAF1CQ15572 869 aaPredicted RBP10.59□□□□□ -0.71
USP4-202ENST00000351842 SHISA4Q96DD7 197 aa10.59□□□□□ -0.71
USP4-202ENST00000351842 CHMP5Q9NZZ3 219 aa10.59□□□□□ -0.71
USP4-202ENST00000351842 ZBTB5O15062 677 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 WDR46O15213 610 aaKnown RBP10.58□□□□□ -0.72
USP4-202ENST00000351842 EVCP57679 992 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 KIF23Q02241 960 aaPredicted RBP10.58□□□□□ -0.72
USP4-202ENST00000351842 FUT2Q10981 343 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 COG2Q14746 738 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 SLC30A10Q6XR72 485 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 GMCL1P1Q8NEA9 526 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 TNPO1Q92973 898 aaKnown RBP10.58□□□□□ -0.72
USP4-202ENST00000351842 GJA10Q969M2 543 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 CAPNS2Q96L46 248 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 PTPN18Q99952 460 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 MTMR6Q9Y217 621 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 PLIN4Q96Q06 1357 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 IGF2BP3O00425 579 aaKnown RBP eCLIP10.58□□□□□ -0.72
USP4-202ENST00000351842 PPIL2Q13356 520 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 RNF26Q9BY78 433 aaPredicted RBP10.58□□□□□ -0.72
USP4-202ENST00000351842 TXNRD2Q9NNW7 524 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 ZDHHC9Q9Y397 364 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 MRVI1Q9Y6F6 885 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 ZBED4O75132 1171 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 PGK2P07205 417 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 PDCP20941 246 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 HERVK_113P62684 666 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 EARS2Q5JPH6 523 aaKnown RBP10.58□□□□□ -0.72
USP4-202ENST00000351842 PPP4R3BQ5MIZ7 849 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 RASAL3Q86YV0 1011 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 RBM46Q8TBY0 533 aaKnown RBP10.58□□□□□ -0.72
USP4-202ENST00000351842 ANKS1AQ92625 1134 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 LPAR1Q92633 364 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 IL17RAQ96F46 866 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 INTS4Q96HW7 963 aaKnown RBP10.58□□□□□ -0.72
USP4-202ENST00000351842 GMCL1Q96IK5 515 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 WDR18Q9BV38 432 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 AMNQ9BXJ7 453 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 ALDH8A1Q9H2A2 487 aaPredicted RBP10.58□□□□□ -0.72
USP4-202ENST00000351842 PSTPIP2Q9H939 334 aa10.58□□□□□ -0.72
USP4-202ENST00000351842 SPDYE16A6NNV3 312 aaPredicted RBP10.57□□□□□ -0.72
USP4-202ENST00000351842 C19orf81C9J6K1 198 aa10.57□□□□□ -0.72
USP4-202ENST00000351842 TBC1D8O95759 1140 aa10.57□□□□□ -0.72
USP4-202ENST00000351842 MYCNP04198 464 aaPredicted RBP10.57□□□□□ -0.72
USP4-202ENST00000351842 MARCKSP29966 332 aaPredicted RBP10.57□□□□□ -0.72
USP4-202ENST00000351842 SP4Q02446 784 aa10.57□□□□□ -0.72
USP4-202ENST00000351842 PFKFB3Q16875 520 aaPredicted RBP10.57□□□□□ -0.72
USP4-202ENST00000351842 INF2Q27J81 1249 aa10.57□□□□□ -0.72
USP4-202ENST00000351842 MUM1L1Q5H9M0 696 aa10.57□□□□□ -0.72
USP4-202ENST00000351842 FBXO18Q8NFZ0 1043 aa10.57□□□□□ -0.72
USP4-202ENST00000351842 SMARCC2Q8TAQ2 1214 aa10.57□□□□□ -0.72
USP4-202ENST00000351842 EFCC1Q9HA90 598 aa10.57□□□□□ -0.72
USP4-202ENST00000351842 FEM1BQ9UK73 627 aa10.57□□□□□ -0.72
USP4-202ENST00000351842 PPP1R9AQ9ULJ8 1098 aa10.57□□□□□ -0.72
USP4-202ENST00000351842 CNPY2Q9Y2B0 182 aa10.57□□□□□ -0.72
USP4-202ENST00000351842 PNMA6FA0A0J9YX94 578 aa10.57□□□□□ -0.72
USP4-202ENST00000351842 VWA5AO00534 786 aa10.57□□□□□ -0.72
USP4-202ENST00000351842 PRPF3O43395 683 aaKnown RBP10.57□□□□□ -0.72
USP4-202ENST00000351842 ZSCAN22P10073 491 aaPredicted RBP10.57□□□□□ -0.72
USP4-202ENST00000351842 TMEM132BQ14DG7 1078 aa10.57□□□□□ -0.72
USP4-202ENST00000351842 LETM2Q2VYF4 491 aa10.57□□□□□ -0.72
USP4-202ENST00000351842 Q3C1V9 767 aa10.57□□□□□ -0.72
USP4-202ENST00000351842 CCDC194A0A1B0GVG4 234 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 SNHG28P0DPA3 235 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 CETPP11597 493 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 GTF2A2P52657 109 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 ANKRD35Q8N283 1001 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 WASF1Q92558 559 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 LLPHQ9BRT6 129 aaKnown RBP10.56□□□□□ -0.72
USP4-202ENST00000351842 RNF146Q9NTX7 359 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 RTEL1Q9NZ71 1219 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 BTBD7Q9P203 1132 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 MYH6P13533 1939 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 KIAA0100Q14667 2235 aaKnown RBP10.56□□□□□ -0.72
USP4-202ENST00000351842 WDR33Q9C0J8 1336 aaKnown RBP10.56□□□□□ -0.72
USP4-202ENST00000351842 COL2A1P02458 1487 aaPredicted RBP10.56□□□□□ -0.72
USP4-202ENST00000351842 A0A0G2JLL6 359 aaPredicted RBP10.56□□□□□ -0.72
USP4-202ENST00000351842 MARCH6O60337 910 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 MYCLP12524 364 aaPredicted RBP10.56□□□□□ -0.72
USP4-202ENST00000351842 EIF2AK2P19525 551 aaKnown RBP10.56□□□□□ -0.72
USP4-202ENST00000351842 MCM7P33993 719 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 STAT3P40763 770 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 APLP1P51693 650 aa10.56□□□□□ -0.72
USP4-202ENST00000351842 ZNF174Q15697 407 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms