RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 RBM6P78332 1123 aaKnown RBP9.56□□□□□ -0.88
RTN3-202ENST00000339997 RCN2Q14257 317 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 MESDQ14696 234 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 TCP11X2Q5H9J9 407 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 TOGARAM2Q6ZUX3 1019 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 CCDC13Q8IYE1 715 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 LINC00301Q8NCQ3 95 aa9.56□□□□□ -0.88
RTN3-202ENST00000339997 RPN1P04843 607 aaKnown RBP9.55□□□□□ -0.88
RTN3-202ENST00000339997 PDE6AP16499 860 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 PPARAQ07869 468 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 TUBB2AQ13885 445 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 DDB1Q16531 1140 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 VWA3BQ502W6 1294 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 TBC1D1Q86TI0 1168 aaPredicted RBP9.55□□□□□ -0.88
RTN3-202ENST00000339997 LRRC47Q8N1G4 583 aaKnown RBP9.55□□□□□ -0.88
RTN3-202ENST00000339997 TUBB2BQ9BVA1 445 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 RGS12O14924 1447 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 CYP2D7A0A087X1C5 515 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 PPFIA4O75335 1185 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 UFL1O94874 794 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 XRCC5P13010 732 aaKnown RBP9.55□□□□□ -0.88
RTN3-202ENST00000339997 PHKA1P46020 1223 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 DNM2P50570 870 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 MRPS9P82933 396 aaKnown RBP9.55□□□□□ -0.88
RTN3-202ENST00000339997 NNTQ13423 1086 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 CUL4AQ13619 759 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 ZNF804AQ7Z570 1209 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 GPBP1Q86WP2 473 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 PPM1KQ8N3J5 372 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 IP6K1Q92551 441 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 N4BP2L2Q92802 583 aaPredicted RBP9.55□□□□□ -0.88
RTN3-202ENST00000339997 EFCC1Q9HA90 598 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 INTS9Q9NV88 658 aaKnown RBP9.55□□□□□ -0.88
RTN3-202ENST00000339997 ZNF853P0CG23 659 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 DLATP10515 647 aaKnown RBP9.55□□□□□ -0.88
RTN3-202ENST00000339997 POLE2P56282 527 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 UBXN2AP68543 259 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 SLC39A14Q15043 492 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 PRR16Q569H4 304 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 LRCH2Q5VUJ6 765 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 G3BP2Q9UN86 482 aaKnown RBP9.55□□□□□ -0.88
RTN3-202ENST00000339997 NOVA2Q9UNW9 492 aaKnown RBP9.55□□□□□ -0.88
RTN3-202ENST00000339997 THRAP3Q9Y2W1 955 aaKnown RBP9.55□□□□□ -0.88
RTN3-202ENST00000339997 THAP12O43422 761 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 NOL3O60936 208 aaKnown RBP9.55□□□□□ -0.88
RTN3-202ENST00000339997 SMIM24O75264 130 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 TNNI1P19237 187 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 MX2P20592 715 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 SNCBQ16143 134 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 GDAP1Q8TB36 358 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 DSCC1Q9BVC3 393 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 MED4Q9NPJ6 270 aa9.55□□□□□ -0.88
RTN3-202ENST00000339997 ARHGEF12Q9NZN5 1544 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 TTC36A6NLP5 189 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 ATP5DP30049 168 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 ZNF449Q6P9G9 518 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 CNOT6LQ96LI5 555 aaKnown RBP9.54□□□□□ -0.88
RTN3-202ENST00000339997 NFU1Q9UMS0 254 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 PCDHB6Q9Y5E3 794 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 ZC3H13Q5T200 1668 aaKnown RBP9.54□□□□□ -0.88
RTN3-202ENST00000339997 GNPATO15228 680 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 ADAM9Q13443 819 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 MYOCDQ8IZQ8 938 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 HIPK4Q8NE63 616 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 HDAC6Q9UBN7 1215 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 ARMCX3Q9UH62 379 aaPredicted RBP9.54□□□□□ -0.88
RTN3-202ENST00000339997 IBTKQ9P2D0 1353 aaPredicted RBP9.54□□□□□ -0.88
RTN3-202ENST00000339997 ITIH3Q06033 890 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 TRMT2AQ8IZ69 625 aaKnown RBP9.54□□□□□ -0.88
RTN3-202ENST00000339997 CEP120Q8N960 986 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 VTI1AQ96AJ9 217 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 KLHL29Q96CT2 875 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 TRAPPC8Q9Y2L5 1435 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 MAGI2Q86UL8 1455 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 COL17A1Q9UMD9 1497 aaPredicted RBP9.54□□□□□ -0.88
RTN3-202ENST00000339997 TCP1P17987 556 aaKnown RBP9.54□□□□□ -0.88
RTN3-202ENST00000339997 ADCY7P51828 1080 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 DHX9Q08211 1270 aaKnown RBP9.54□□□□□ -0.88
RTN3-202ENST00000339997 SH2D4BQ5SQS7 431 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 SCYL2Q6P3W7 929 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 APOA5Q6Q788 366 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 BLIDQ8IZY5 108 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 MAGOHBQ96A72 148 aaKnown RBP9.54□□□□□ -0.88
RTN3-202ENST00000339997 RTEL1Q9NZ71 1219 aa9.54□□□□□ -0.88
RTN3-202ENST00000339997 TTC37Q6PGP7 1564 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 CCDC151A5D8V7 595 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 WDR66Q8TBY9 1149 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 LPIN2Q92539 896 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 NUF2Q9BZD4 464 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 VCXQ9H320 206 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 HOMER3Q9NSC5 361 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 ADAMTS1Q9UHI8 967 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 MAN1B1Q9UKM7 699 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 PCDHA12Q9UN75 941 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 FANCAO15360 1455 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 ADCY9O60503 1353 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 CARMIL3Q8ND23 1372 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 CLIC2O15247 247 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 H2AFZP0C0S5 128 aa9.53□□□□□ -0.88
RTN3-202ENST00000339997 KCNQ4P56696 695 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms