RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 OXER1Q8TDS5 423 aa11.52□□□□□ -0.57
HMGB3-201ENST00000325307 RPAP3Q9H6T3 665 aaPredicted RBP11.52□□□□□ -0.57
HMGB3-201ENST00000325307 SH3GLB2Q9NR46 395 aa11.52□□□□□ -0.57
HMGB3-201ENST00000325307 PRR12Q9ULL5 1215 aa11.52□□□□□ -0.57
HMGB3-201ENST00000325307 FLOT1O75955 427 aa11.51□□□□□ -0.57
HMGB3-201ENST00000325307 L1TD1Q5T7N2 865 aaKnown RBP11.51□□□□□ -0.57
HMGB3-201ENST00000325307 CHADLQ6NUI6 762 aa11.51□□□□□ -0.57
HMGB3-201ENST00000325307 SHISA4Q96DD7 197 aa11.51□□□□□ -0.57
HMGB3-201ENST00000325307 PANK2Q9BZ23 570 aa11.51□□□□□ -0.57
HMGB3-201ENST00000325307 AFG3L2Q9Y4W6 797 aa11.51□□□□□ -0.57
HMGB3-201ENST00000325307 CTDP1Q9Y5B0 961 aaPredicted RBP11.51□□□□□ -0.57
HMGB3-201ENST00000325307 USH1GQ495M9 461 aa11.51□□□□□ -0.57
HMGB3-201ENST00000325307 TYW1BQ6NUM6 668 aa11.51□□□□□ -0.57
HMGB3-201ENST00000325307 CCDC174Q6PII3 467 aa11.51□□□□□ -0.57
HMGB3-201ENST00000325307 BTNL9Q6UXG8 535 aa11.51□□□□□ -0.57
HMGB3-201ENST00000325307 ERO1BQ86YB8 467 aa11.51□□□□□ -0.57
HMGB3-201ENST00000325307 NOSTRINQ8IVI9 506 aa11.51□□□□□ -0.57
HMGB3-201ENST00000325307 C2orf69Q8N8R5 385 aa11.51□□□□□ -0.57
HMGB3-201ENST00000325307 RGS22Q8NE09 1264 aa11.51□□□□□ -0.57
HMGB3-201ENST00000325307 SLC10A4Q96EP9 437 aa11.51□□□□□ -0.57
HMGB3-201ENST00000325307 ZNF396Q96N95 335 aaPredicted RBP11.51□□□□□ -0.57
HMGB3-201ENST00000325307 GBA2Q9HCG7 927 aaPredicted RBP11.51□□□□□ -0.57
HMGB3-201ENST00000325307 SKOR2Q2VWA4 1001 aaPredicted RBP11.51□□□□□ -0.57
HMGB3-201ENST00000325307 RBM46Q8TBY0 533 aaKnown RBP11.51□□□□□ -0.57
HMGB3-201ENST00000325307 FOXP1Q9H334 677 aaPredicted RBP11.51□□□□□ -0.57
HMGB3-201ENST00000325307 C6orf50Q9HD87 102 aa11.51□□□□□ -0.57
HMGB3-201ENST00000325307 PCDHA1Q9Y5I3 950 aa11.51□□□□□ -0.57
HMGB3-201ENST00000325307 SMCO2A6NFE2 343 aa11.5□□□□□ -0.57
HMGB3-201ENST00000325307 PRPF40AO75400 957 aaKnown RBP11.5□□□□□ -0.57
HMGB3-201ENST00000325307 ATP2B1P20020 1258 aa11.5□□□□□ -0.57
HMGB3-201ENST00000325307 PTMSP20962 102 aa11.5□□□□□ -0.57
HMGB3-201ENST00000325307 MAP3K11Q16584 847 aa11.5□□□□□ -0.57
HMGB3-201ENST00000325307 hCG_1984214I3L0E3 225 aa11.5□□□□□ -0.57
HMGB3-201ENST00000325307 IRF6O14896 467 aa11.5□□□□□ -0.57
HMGB3-201ENST00000325307 PPATQ06203 517 aa11.5□□□□□ -0.57
HMGB3-201ENST00000325307 FBXO11Q86XK2 927 aa11.5□□□□□ -0.57
HMGB3-201ENST00000325307 BLIDQ8IZY5 108 aa11.5□□□□□ -0.57
HMGB3-201ENST00000325307 ZNF713Q8N859 430 aaPredicted RBP11.5□□□□□ -0.57
HMGB3-201ENST00000325307 OPTNQ96CV9 577 aa11.5□□□□□ -0.57
HMGB3-201ENST00000325307 SLF1Q9BQI6 1058 aa11.5□□□□□ -0.57
HMGB3-201ENST00000325307 AMNQ9BXJ7 453 aa11.5□□□□□ -0.57
HMGB3-201ENST00000325307 CFAP45Q9UL16 551 aa11.5□□□□□ -0.57
HMGB3-201ENST00000325307 GOLGA6L3A6NEY3 463 aa11.49□□□□□ -0.57
HMGB3-201ENST00000325307 PPP1R11O60927 126 aaPredicted RBP11.49□□□□□ -0.57
HMGB3-201ENST00000325307 U2AF2P26368 475 aaKnown RBP eCLIP11.49□□□□□ -0.57
HMGB3-201ENST00000325307 GNA11P29992 359 aa11.49□□□□□ -0.57
HMGB3-201ENST00000325307 MYSM1Q5VVJ2 828 aa11.49□□□□□ -0.57
HMGB3-201ENST00000325307 GADL1Q6ZQY3 521 aa11.49□□□□□ -0.57
HMGB3-201ENST00000325307 PCDHA4Q9UN74 947 aa11.49□□□□□ -0.57
HMGB3-201ENST00000325307 PRPF38AQ8NAV1 312 aaKnown RBP11.49□□□□□ -0.57
HMGB3-201ENST00000325307 MTMR8Q96EF0 704 aa11.49□□□□□ -0.57
HMGB3-201ENST00000325307 SPDYE5A6NIY4 337 aa11.49□□□□□ -0.57
HMGB3-201ENST00000325307 ADCY7P51828 1080 aa11.49□□□□□ -0.57
HMGB3-201ENST00000325307 CSPP1Q1MSJ5 1256 aa11.49□□□□□ -0.57
HMGB3-201ENST00000325307 RASGRP4Q8TDF6 673 aa11.49□□□□□ -0.57
HMGB3-201ENST00000325307 SPATA32Q96LK8 384 aa11.49□□□□□ -0.57
HMGB3-201ENST00000325307 FTOQ9C0B1 505 aaKnown RBP eCLIP11.49□□□□□ -0.57
HMGB3-201ENST00000325307 DDX49Q9Y6V7 483 aaKnown RBP11.49□□□□□ -0.57
HMGB3-201ENST00000325307 LDLRAD1Q5T700 205 aa11.48□□□□□ -0.57
HMGB3-201ENST00000325307 GALNT17Q6IS24 598 aa11.48□□□□□ -0.57
HMGB3-201ENST00000325307 PIK3AP1Q6ZUJ8 805 aa11.48□□□□□ -0.57
HMGB3-201ENST00000325307 SCAND2PQ9GZW5 306 aaPredicted RBP11.48□□□□□ -0.57
HMGB3-201ENST00000325307 CCDC194A0A1B0GVG4 234 aa11.48□□□□□ -0.57
HMGB3-201ENST00000325307 PLA2G6O60733 806 aa11.48□□□□□ -0.57
HMGB3-201ENST00000325307 FKBP1BP68106 108 aa11.48□□□□□ -0.57
HMGB3-201ENST00000325307 CPXCR1Q8N123 301 aa11.48□□□□□ -0.57
HMGB3-201ENST00000325307 BICD2Q8TD16 824 aa11.48□□□□□ -0.57
HMGB3-201ENST00000325307 USP28Q96RU2 1077 aa11.48□□□□□ -0.57
HMGB3-201ENST00000325307 ZMYND12Q9H0C1 365 aa11.48□□□□□ -0.57
HMGB3-201ENST00000325307 TAL1P17542 331 aaPredicted RBP11.48□□□□□ -0.57
HMGB3-201ENST00000325307 MKRN3Q13064 507 aaKnown RBP11.48□□□□□ -0.57
HMGB3-201ENST00000325307 PPIL2Q13356 520 aa11.48□□□□□ -0.57
HMGB3-201ENST00000325307 NPY5RQ15761 445 aa11.48□□□□□ -0.57
HMGB3-201ENST00000325307 SECISBP2LQ93073 1101 aaKnown RBP11.48□□□□□ -0.57
HMGB3-201ENST00000325307 C12orf42Q96LP6 360 aa11.48□□□□□ -0.57
HMGB3-201ENST00000325307 FAM205CA6NFA0 338 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 TRAF1Q13077 416 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 PPP1R18Q6NYC8 613 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 FAM177A1Q8N128 213 aaPredicted RBP11.47□□□□□ -0.57
HMGB3-201ENST00000325307 REXO1Q8N1G1 1221 aaKnown RBP11.47□□□□□ -0.57
HMGB3-201ENST00000325307 CUL5Q93034 780 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 PSTPIP2Q9H939 334 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 BIN2Q9UBW5 565 aaPredicted RBP11.47□□□□□ -0.57
HMGB3-201ENST00000325307 PPP1R9AQ9ULJ8 1098 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 NOL7Q9UMY1 257 aaKnown RBP11.47□□□□□ -0.57
HMGB3-201ENST00000325307 CXCL11O14625 94 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 ZBED4O75132 1171 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 ITGBL1O95965 494 aaPredicted RBP11.47□□□□□ -0.57
HMGB3-201ENST00000325307 SF3A1Q15459 793 aaKnown RBP11.47□□□□□ -0.57
HMGB3-201ENST00000325307 JAKMIP3Q5VZ66 844 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 RANBP17Q9H2T7 1088 aaKnown RBP11.47□□□□□ -0.57
HMGB3-201ENST00000325307 GOLGA6L4A6NEF3 574 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 USP17L15C9J2P7 530 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 USP17L13C9JLJ4 530 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 USP17L11C9JVI0 530 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 USP17L18D6R9N7 530 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 USP17L22D6RA61 530 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 USP17L17D6RBQ6 530 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 USP17L19D6RCP7 530 aa11.47□□□□□ -0.57
HMGB3-201ENST00000325307 USP17L20D6RJB6 530 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms