RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 MMRN2Q9H8L6 949 aa11.78□□□□□ -0.52
COL3A1-202ENST00000317840 XDHP47989 1333 aa11.77□□□□□ -0.52
COL3A1-202ENST00000317840 ARFGEF2Q9Y6D5 1785 aa11.77□□□□□ -0.52
COL3A1-202ENST00000317840 SERPINB2P05120 415 aa11.77□□□□□ -0.52
COL3A1-202ENST00000317840 PRDX5P30044 214 aa11.77□□□□□ -0.52
COL3A1-202ENST00000317840 KRT27Q7Z3Y8 459 aa11.77□□□□□ -0.52
COL3A1-202ENST00000317840 TGFBRAP1Q8WUH2 860 aa11.77□□□□□ -0.52
COL3A1-202ENST00000317840 NOC4LQ9BVI4 516 aaKnown RBP11.77□□□□□ -0.52
COL3A1-202ENST00000317840 HAUS4Q9H6D7 363 aa11.77□□□□□ -0.52
COL3A1-202ENST00000317840 LAMA4Q16363 1823 aa11.77□□□□□ -0.52
COL3A1-202ENST00000317840 SEMA3EO15041 775 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 USO1O60763 962 aaKnown RBP11.77□□□□□ -0.53
COL3A1-202ENST00000317840 DDAH1O94760 285 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 TUBBP07437 444 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 MCM3P25205 808 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 ACTN2P35609 894 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 GTF2IP78347 998 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 TROAPQ12815 778 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 CDKAL1Q5VV42 579 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 ZNF804AQ7Z570 1209 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 GOLGA5Q8TBA6 731 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 RASSF4Q9H2L5 321 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 PLEKHA4Q9H4M7 779 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 ANKZF1Q9H8Y5 726 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 ZNF804BA4D1E1 1349 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 ANKRD65E5RJM6 399 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 IVLP07476 585 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 NAPAP54920 295 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 CKAP4Q07065 602 aaKnown RBP11.77□□□□□ -0.53
COL3A1-202ENST00000317840 SEC23AQ15436 765 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 TDRD12Q587J7 1177 aaKnown RBP11.77□□□□□ -0.53
COL3A1-202ENST00000317840 DNAJC21Q5F1R6 531 aaKnown RBP11.77□□□□□ -0.53
COL3A1-202ENST00000317840 BEND6Q5SZJ8 279 aaPredicted RBP11.77□□□□□ -0.53
COL3A1-202ENST00000317840 IQCEQ6IPM2 695 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 FAM204AQ9H8W3 233 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 SCN11AQ9UI33 1791 aa11.77□□□□□ -0.53
COL3A1-202ENST00000317840 GOLGA8HP0CJ92 632 aa11.76□□□□□ -0.53
COL3A1-202ENST00000317840 RCAN1P53805 252 aa11.76□□□□□ -0.53
COL3A1-202ENST00000317840 SPTY2D1Q68D10 685 aaPredicted RBP11.76□□□□□ -0.53
COL3A1-202ENST00000317840 CACNA2D4Q7Z3S7 1137 aa11.76□□□□□ -0.53
COL3A1-202ENST00000317840 PNMA1Q8ND90 353 aa11.76□□□□□ -0.53
COL3A1-202ENST00000317840 KLRK1P26718 216 aa11.76□□□□□ -0.53
COL3A1-202ENST00000317840 MRPS25P82663 173 aaKnown RBP11.76□□□□□ -0.53
COL3A1-202ENST00000317840 TUBGCP2Q9BSJ2 902 aa11.76□□□□□ -0.53
COL3A1-202ENST00000317840 FAM207AQ9NSI2 230 aaPredicted RBP11.76□□□□□ -0.53
COL3A1-202ENST00000317840 NARFQ9UHQ1 456 aa11.76□□□□□ -0.53
COL3A1-202ENST00000317840 VEGFAP15692 232 aaPredicted RBP11.76□□□□□ -0.53
COL3A1-202ENST00000317840 VPS72Q15906 364 aa11.76□□□□□ -0.53
COL3A1-202ENST00000317840 MTA3Q9BTC8 594 aa11.76□□□□□ -0.53
COL3A1-202ENST00000317840 MYO1AQ9UBC5 1043 aa11.76□□□□□ -0.53
COL3A1-202ENST00000317840 GGA1Q9UJY5 639 aa11.76□□□□□ -0.53
COL3A1-202ENST00000317840 LDHCP07864 332 aa11.75□□□□□ -0.53
COL3A1-202ENST00000317840 LONP1P36776 959 aaKnown RBP11.75□□□□□ -0.53
COL3A1-202ENST00000317840 SCNN1DP51172 638 aa11.75□□□□□ -0.53
COL3A1-202ENST00000317840 NFIXQ14938 502 aa11.75□□□□□ -0.53
COL3A1-202ENST00000317840 MB21D1Q8N884 522 aa11.75□□□□□ -0.53
COL3A1-202ENST00000317840 ZHX3Q9H4I2 956 aa11.75□□□□□ -0.53
COL3A1-202ENST00000317840 RNF225M0QZC1 329 aaPredicted RBP11.75□□□□□ -0.53
COL3A1-202ENST00000317840 CCNT1O60563 726 aaKnown RBP11.75□□□□□ -0.53
COL3A1-202ENST00000317840 NTSR2O95665 410 aa11.75□□□□□ -0.53
COL3A1-202ENST00000317840 TRAPPC10P48553 1259 aa11.75□□□□□ -0.53
COL3A1-202ENST00000317840 DNM2P50570 870 aa11.75□□□□□ -0.53
COL3A1-202ENST00000317840 TYW1BQ6NUM6 668 aa11.75□□□□□ -0.53
COL3A1-202ENST00000317840 GSPT2Q8IYD1 628 aaKnown RBP11.75□□□□□ -0.53
COL3A1-202ENST00000317840 SPATA20Q8TB22 786 aa11.75□□□□□ -0.53
COL3A1-202ENST00000317840 DISC1Q9NRI5 854 aa11.75□□□□□ -0.53
COL3A1-202ENST00000317840 SEC63Q9UGP8 760 aaKnown RBP11.75□□□□□ -0.53
COL3A1-202ENST00000317840 LIMA1Q9UHB6 759 aaKnown RBP11.75□□□□□ -0.53
COL3A1-202ENST00000317840 BCL9O00512 1426 aa11.75□□□□□ -0.53
COL3A1-202ENST00000317840 USP17L8P0C7I0 530 aa11.75□□□□□ -0.53
COL3A1-202ENST00000317840 FAM114A1Q8IWE2 563 aa11.75□□□□□ -0.53
COL3A1-202ENST00000317840 AFAP1L1Q8TED9 768 aa11.75□□□□□ -0.53
COL3A1-202ENST00000317840 CALML4Q96GE6 196 aa11.75□□□□□ -0.53
COL3A1-202ENST00000317840 UIMC1Q96RL1 719 aa11.75□□□□□ -0.53
COL3A1-202ENST00000317840 CPVLQ9H3G5 476 aa11.75□□□□□ -0.53
COL3A1-202ENST00000317840 TRIM66O15016 1216 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 ATP1A1P05023 1023 aaKnown RBP11.74□□□□□ -0.53
COL3A1-202ENST00000317840 MECOMQ03112 1051 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 EVX2Q03828 476 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 UBE4AQ14139 1066 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 TEX11Q8IYF3 940 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 ANKRD13CQ8N6S4 541 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 CERKQ8TCT0 537 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 L1RE1Q9UN81 338 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 MYO1CO00159 1063 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 RNF40O75150 1001 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 TACC1O75410 805 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 AMPD3Q01432 767 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 TCP10Q12799 353 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 MFSD14BQ5SR56 506 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 CLEC4GQ6UXB4 293 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 CABP7Q86V35 215 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 C2CD5Q86YS7 1000 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 FAM71BQ8TC56 605 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 SECISBP2LQ93073 1101 aaKnown RBP11.74□□□□□ -0.53
COL3A1-202ENST00000317840 DYNLL2Q96FJ2 89 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 RBM17Q96I25 401 aaKnown RBP11.74□□□□□ -0.53
COL3A1-202ENST00000317840 BICDL2A1A5D9 508 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 PAFAH1B1P43034 410 aa11.74□□□□□ -0.53
COL3A1-202ENST00000317840 GNAQP50148 359 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms