RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 DNAJC25-GNG10A0A024R161 153 aa19.18■□□□□ 0.66
LSM1-201ENST00000311351 FDX1P10109 184 aa19.18■□□□□ 0.66
LSM1-201ENST00000311351 SYDE2Q5VT97 1194 aa19.18■□□□□ 0.66
LSM1-201ENST00000311351 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.18■□□□□ 0.66
LSM1-201ENST00000311351 CHST13Q8NET6 341 aa19.18■□□□□ 0.66
LSM1-201ENST00000311351 RNF146Q9NTX7 359 aa19.18■□□□□ 0.66
LSM1-201ENST00000311351 DIS3Q9Y2L1 958 aaKnown RBP19.18■□□□□ 0.66
LSM1-201ENST00000311351 LRRC37A2A6NM11 1700 aa19.17■□□□□ 0.66
LSM1-201ENST00000311351 TRIOBPQ9H2D6 2365 aa19.17■□□□□ 0.66
LSM1-201ENST00000311351 SGSM2O43147 1006 aa19.17■□□□□ 0.66
LSM1-201ENST00000311351 SEPT4O43236 478 aa19.17■□□□□ 0.66
LSM1-201ENST00000311351 EVI5O60447 810 aa19.17■□□□□ 0.66
LSM1-201ENST00000311351 MSCO60682 206 aa19.17■□□□□ 0.66
LSM1-201ENST00000311351 ALAS1P13196 640 aa19.17■□□□□ 0.66
LSM1-201ENST00000311351 CENPQQ7L2Z9 268 aaPredicted RBP19.17■□□□□ 0.66
LSM1-201ENST00000311351 ANKRD35Q8N283 1001 aa19.17■□□□□ 0.66
LSM1-201ENST00000311351 FGD4Q96M96 766 aa19.17■□□□□ 0.66
LSM1-201ENST00000311351 TTC14Q96N46 770 aa19.17■□□□□ 0.66
LSM1-201ENST00000311351 ACAD9Q9H845 621 aa19.17■□□□□ 0.66
LSM1-201ENST00000311351 FBXO40Q9UH90 709 aa19.17■□□□□ 0.66
LSM1-201ENST00000311351 SNHG28P0DPA3 235 aa19.16■□□□□ 0.66
LSM1-201ENST00000311351 COL6A1P12109 1028 aa19.16■□□□□ 0.66
LSM1-201ENST00000311351 ZNF543Q08ER8 600 aa19.16■□□□□ 0.66
LSM1-201ENST00000311351 BTNL9Q6UXG8 535 aa19.16■□□□□ 0.66
LSM1-201ENST00000311351 IQCA1Q86XH1 822 aa19.16■□□□□ 0.66
LSM1-201ENST00000311351 ENAHQ8N8S7 591 aaPredicted RBP19.16■□□□□ 0.66
LSM1-201ENST00000311351 ZSCAN10Q96SZ4 725 aaPredicted RBP19.16■□□□□ 0.66
LSM1-201ENST00000311351 RANBP17Q9H2T7 1088 aaKnown RBP19.16■□□□□ 0.66
LSM1-201ENST00000311351 A1CFQ9NQ94 594 aaKnown RBP19.16■□□□□ 0.66
LSM1-201ENST00000311351 ZSWIM5Q9P217 1185 aa19.16■□□□□ 0.66
LSM1-201ENST00000311351 TAF6LQ9Y6J9 622 aa19.16■□□□□ 0.66
LSM1-201ENST00000311351 TNKSO95271 1327 aa19.16■□□□□ 0.66
LSM1-201ENST00000311351 CYP21A2P08686 494 aa19.15■□□□□ 0.66
LSM1-201ENST00000311351 GOLGA8HP0CJ92 632 aa19.15■□□□□ 0.66
LSM1-201ENST00000311351 MUM1L1Q5H9M0 696 aa19.15■□□□□ 0.66
LSM1-201ENST00000311351 DGKHQ86XP1 1220 aa19.15■□□□□ 0.66
LSM1-201ENST00000311351 C7orf61Q8IZ16 206 aa19.15■□□□□ 0.66
LSM1-201ENST00000311351 PNMA1Q8ND90 353 aa19.15■□□□□ 0.66
LSM1-201ENST00000311351 LENG1Q96BZ8 264 aaPredicted RBP19.15■□□□□ 0.66
LSM1-201ENST00000311351 TRERF1Q96PN7 1200 aa19.15■□□□□ 0.66
LSM1-201ENST00000311351 KRT23Q9C075 422 aa19.15■□□□□ 0.66
LSM1-201ENST00000311351 CNNM2Q9H8M5 875 aa19.15■□□□□ 0.66
LSM1-201ENST00000311351 CCPG1Q9ULG6 757 aa19.15■□□□□ 0.66
LSM1-201ENST00000311351 NT5C2P49902 561 aa19.14■□□□□ 0.65
LSM1-201ENST00000311351 CNTN2Q02246 1040 aa19.14■□□□□ 0.65
LSM1-201ENST00000311351 TKFCQ3LXA3 575 aa19.14■□□□□ 0.65
LSM1-201ENST00000311351 GJC2Q5T442 439 aaPredicted RBP19.14■□□□□ 0.65
LSM1-201ENST00000311351 CYB5R4Q7L1T6 521 aa19.14■□□□□ 0.65
LSM1-201ENST00000311351 CPVLQ9H3G5 476 aa19.14■□□□□ 0.65
LSM1-201ENST00000311351 NR2E3Q9Y5X4 410 aa19.14■□□□□ 0.65
LSM1-201ENST00000311351 U3KPZ7 1027 aaPredicted RBP19.14■□□□□ 0.65
LSM1-201ENST00000311351 MYH6P13533 1939 aa19.13■□□□□ 0.65
LSM1-201ENST00000311351 SNAI1O95863 264 aaPredicted RBP19.13■□□□□ 0.65
LSM1-201ENST00000311351 MYCNP04198 464 aaPredicted RBP19.13■□□□□ 0.65
LSM1-201ENST00000311351 ICAM1P05362 532 aa19.13■□□□□ 0.65
LSM1-201ENST00000311351 ZNF865P0CJ78 1059 aaPredicted RBP19.13■□□□□ 0.65
LSM1-201ENST00000311351 UBAC1Q9BSL1 405 aa19.13■□□□□ 0.65
LSM1-201ENST00000311351 KAT14Q9H8E8 782 aa19.13■□□□□ 0.65
LSM1-201ENST00000311351 PCDH10Q9P2E7 1040 aa19.13■□□□□ 0.65
LSM1-201ENST00000311351 NRBP1Q9UHY1 535 aa19.13■□□□□ 0.65
LSM1-201ENST00000311351 COLQQ9Y215 455 aaPredicted RBP19.13■□□□□ 0.65
LSM1-201ENST00000311351 CNPY2Q9Y2B0 182 aa19.13■□□□□ 0.65
LSM1-201ENST00000311351 SYNGAP1Q96PV0 1343 aa19.13■□□□□ 0.65
LSM1-201ENST00000311351 POTEB2H3BUK9 544 aa19.12■□□□□ 0.65
LSM1-201ENST00000311351 DNM1LO00429 736 aa19.12■□□□□ 0.65
LSM1-201ENST00000311351 LRRC26Q2I0M4 334 aa19.12■□□□□ 0.65
LSM1-201ENST00000311351 CCDC178Q5BJE1 867 aa19.12■□□□□ 0.65
LSM1-201ENST00000311351 MAMDC4Q6UXC1 1216 aa19.12■□□□□ 0.65
LSM1-201ENST00000311351 CHRDL2Q6WN34 429 aa19.12■□□□□ 0.65
LSM1-201ENST00000311351 STOX1Q6ZVD7 989 aa19.12■□□□□ 0.65
LSM1-201ENST00000311351 ZNF467Q7Z7K2 595 aaPredicted RBP19.12■□□□□ 0.65
LSM1-201ENST00000311351 MSL3Q8N5Y2 521 aaKnown RBP19.12■□□□□ 0.65
LSM1-201ENST00000311351 FAM133AQ8N9E0 248 aa19.12■□□□□ 0.65
LSM1-201ENST00000311351 ANKS1AQ92625 1134 aa19.12■□□□□ 0.65
LSM1-201ENST00000311351 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.12■□□□□ 0.65
LSM1-201ENST00000311351 ZHX1Q9UKY1 873 aaPredicted RBP19.12■□□□□ 0.65
LSM1-201ENST00000311351 DNAH12Q6ZR08 3092 aa19.12■□□□□ 0.65
LSM1-201ENST00000311351 RANBP2P49792 3224 aaKnown RBP19.12■□□□□ 0.65
LSM1-201ENST00000311351 ASTN1O14525 1302 aa19.11■□□□□ 0.65
LSM1-201ENST00000311351 HABP4Q5JVS0 413 aaKnown RBP19.11■□□□□ 0.65
LSM1-201ENST00000311351 NSMFQ6X4W1 530 aa19.11■□□□□ 0.65
LSM1-201ENST00000311351 ARMCX2Q7L311 632 aa19.11■□□□□ 0.65
LSM1-201ENST00000311351 SENP6Q9GZR1 1112 aaPredicted RBP19.11■□□□□ 0.65
LSM1-201ENST00000311351 UBA5Q9GZZ9 404 aa19.11■□□□□ 0.65
LSM1-201ENST00000311351 ZMYND8Q9ULU4 1186 aaPredicted RBP19.11■□□□□ 0.65
LSM1-201ENST00000311351 RBM8AQ9Y5S9 174 aaKnown RBP19.11■□□□□ 0.65
LSM1-201ENST00000311351 DDX49Q9Y6V7 483 aaKnown RBP19.11■□□□□ 0.65
LSM1-201ENST00000311351 SOWAHBA6NEL2 793 aa19.1■□□□□ 0.65
LSM1-201ENST00000311351 KBTBD13C9JR72 458 aa19.1■□□□□ 0.65
LSM1-201ENST00000311351 NFIBO00712 420 aa19.1■□□□□ 0.65
LSM1-201ENST00000311351 RARBP10826 455 aa19.1■□□□□ 0.65
LSM1-201ENST00000311351 AKR1A1P14550 325 aa19.1■□□□□ 0.65
LSM1-201ENST00000311351 ATN1P54259 1190 aaPredicted RBP19.1■□□□□ 0.65
LSM1-201ENST00000311351 LRRC41Q15345 812 aa19.1■□□□□ 0.65
LSM1-201ENST00000311351 SEC23AQ15436 765 aa19.1■□□□□ 0.65
LSM1-201ENST00000311351 GPATCH4Q5T3I0 446 aaKnown RBP19.1■□□□□ 0.65
LSM1-201ENST00000311351 IFIT1BQ5T764 474 aaKnown RBP19.1■□□□□ 0.65
LSM1-201ENST00000311351 CCDC144CPQ8IYA2 1237 aa19.1■□□□□ 0.65
LSM1-201ENST00000311351 MAP4K1Q92918 833 aa19.1■□□□□ 0.65
LSM1-201ENST00000311351 ESYT1Q9BSJ8 1104 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms