RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 TCP11Q8WWU5 503 aa19.03■□□□□ 0.64
SYNPO-201ENST00000307662 HAUS7Q99871 368 aa19.03■□□□□ 0.64
SYNPO-201ENST00000307662 JPH2Q9BR39 696 aaPredicted RBP19.03■□□□□ 0.64
SYNPO-201ENST00000307662 SMCO2A6NFE2 343 aa19.02■□□□□ 0.64
SYNPO-201ENST00000307662 GPBP1Q86WP2 473 aa19.02■□□□□ 0.64
SYNPO-201ENST00000307662 EPB41L5Q9HCM4 733 aa19.02■□□□□ 0.64
SYNPO-201ENST00000307662 RAB20Q9NX57 234 aa19.02■□□□□ 0.64
SYNPO-201ENST00000307662 MROH5Q6ZUA9 1318 aa19.02■□□□□ 0.64
SYNPO-201ENST00000307662 CEP170Q5SW79 1584 aa19.02■□□□□ 0.64
SYNPO-201ENST00000307662 CASP8Q14790 479 aa19.02■□□□□ 0.64
SYNPO-201ENST00000307662 CMTR1Q8N1G2 835 aaKnown RBP19.02■□□□□ 0.64
SYNPO-201ENST00000307662 ANKRD13CQ8N6S4 541 aa19.02■□□□□ 0.64
SYNPO-201ENST00000307662 PPP1R9AQ9ULJ8 1098 aa19.02■□□□□ 0.64
SYNPO-201ENST00000307662 KDM5DQ9BY66 1539 aa19.02■□□□□ 0.64
SYNPO-201ENST00000307662 IL9RQ01113 521 aa19.02■□□□□ 0.64
SYNPO-201ENST00000307662 ADAT2Q7Z6V5 191 aaKnown RBP19.02■□□□□ 0.64
SYNPO-201ENST00000307662 IFNB1P01574 187 aa19.02■□□□□ 0.63
SYNPO-201ENST00000307662 ATF2P15336 505 aa19.02■□□□□ 0.63
SYNPO-201ENST00000307662 NEURL1BA8MQ27 555 aa19.01■□□□□ 0.63
SYNPO-201ENST00000307662 SH3BP5O60239 455 aa19.01■□□□□ 0.63
SYNPO-201ENST00000307662 LONP1P36776 959 aaKnown RBP19.01■□□□□ 0.63
SYNPO-201ENST00000307662 IFNAR2P48551 515 aa19.01■□□□□ 0.63
SYNPO-201ENST00000307662 VSTM4Q8IW00 320 aa19.01■□□□□ 0.63
SYNPO-201ENST00000307662 CDCA7Q9BWT1 371 aaPredicted RBP19.01■□□□□ 0.63
SYNPO-201ENST00000307662 A1BGP04217 495 aa19.01■□□□□ 0.63
SYNPO-201ENST00000307662 ZSCAN10Q96SZ4 725 aaPredicted RBP19.01■□□□□ 0.63
SYNPO-201ENST00000307662 TUBGCP2Q9BSJ2 902 aa19.01■□□□□ 0.63
SYNPO-201ENST00000307662 BIN2Q9UBW5 565 aaPredicted RBP19.01■□□□□ 0.63
SYNPO-201ENST00000307662 FAF1Q9UNN5 650 aaPredicted RBP19.01■□□□□ 0.63
SYNPO-201ENST00000307662 TFAP4Q01664 338 aa19.01■□□□□ 0.63
SYNPO-201ENST00000307662 NNTQ13423 1086 aa19.01■□□□□ 0.63
SYNPO-201ENST00000307662 PPP2R5DQ14738 602 aa19.01■□□□□ 0.63
SYNPO-201ENST00000307662 CNOT6LQ96LI5 555 aaKnown RBP19.01■□□□□ 0.63
SYNPO-201ENST00000307662 MBD5Q9P267 1494 aa19.01■□□□□ 0.63
SYNPO-201ENST00000307662 EEF1GP26641 437 aaKnown RBP19.01■□□□□ 0.63
SYNPO-201ENST00000307662 TECP42680 631 aa19.01■□□□□ 0.63
SYNPO-201ENST00000307662 VPS41P49754 854 aa19.01■□□□□ 0.63
SYNPO-201ENST00000307662 BTG4Q9NY30 223 aa19.01■□□□□ 0.63
SYNPO-201ENST00000307662 KDRP35968 1356 aa19.01■□□□□ 0.63
SYNPO-201ENST00000307662 TMEM2Q9UHN6 1383 aa19.01■□□□□ 0.63
SYNPO-201ENST00000307662 C2orf54Q08AI8 447 aa19.01■□□□□ 0.63
SYNPO-201ENST00000307662 HSP90AA5PQ58FG0 334 aa19.01■□□□□ 0.63
SYNPO-201ENST00000307662 MCTP2Q6DN12 878 aa19.01■□□□□ 0.63
SYNPO-201ENST00000307662 ZNF496Q96IT1 587 aaPredicted RBP19.01■□□□□ 0.63
SYNPO-201ENST00000307662 TAF5LO75529 589 aa19■□□□□ 0.63
SYNPO-201ENST00000307662 MAGEA9P43362 315 aa19■□□□□ 0.63
SYNPO-201ENST00000307662 RETREG2Q8NC44 543 aa19■□□□□ 0.63
SYNPO-201ENST00000307662 TSPYL2Q9H2G4 693 aaPredicted RBP19■□□□□ 0.63
SYNPO-201ENST00000307662 RCOR1Q9UKL0 485 aa19■□□□□ 0.63
SYNPO-201ENST00000307662 CARMIL3Q8ND23 1372 aa19■□□□□ 0.63
SYNPO-201ENST00000307662 OR52Z1P0C646 297 aa19■□□□□ 0.63
SYNPO-201ENST00000307662 MAN1A1P33908 653 aa19■□□□□ 0.63
SYNPO-201ENST00000307662 ALS2CLQ60I27 953 aa19■□□□□ 0.63
SYNPO-201ENST00000307662 PANK4Q9NVE7 773 aa19■□□□□ 0.63
SYNPO-201ENST00000307662 RIMBP2O15034 1052 aa19■□□□□ 0.63
SYNPO-201ENST00000307662 E2F4Q16254 413 aa19■□□□□ 0.63
SYNPO-201ENST00000307662 FAM47AQ5JRC9 791 aa19■□□□□ 0.63
SYNPO-201ENST00000307662 ABCB6Q9NP58 842 aa19■□□□□ 0.63
SYNPO-201ENST00000307662 TTC36A6NLP5 189 aa19■□□□□ 0.63
SYNPO-201ENST00000307662 MYO1CO00159 1063 aa19■□□□□ 0.63
SYNPO-201ENST00000307662 PLEKHF1Q96S99 279 aa19■□□□□ 0.63
SYNPO-201ENST00000307662 CNOT10Q9H9A5 744 aaKnown RBP19■□□□□ 0.63
SYNPO-201ENST00000307662 IFNL3Q8IZI9 196 aa18.99■□□□□ 0.63
SYNPO-201ENST00000307662 RDH13Q8NBN7 331 aa18.99■□□□□ 0.63
SYNPO-201ENST00000307662 MAGEF1Q9HAY2 307 aa18.99■□□□□ 0.63
SYNPO-201ENST00000307662 SLC39A2Q9NP94 309 aa18.99■□□□□ 0.63
SYNPO-201ENST00000307662 SOWAHDA6NJG2 315 aa18.99■□□□□ 0.63
SYNPO-201ENST00000307662 CD19P15391 556 aa18.99■□□□□ 0.63
SYNPO-201ENST00000307662 RNASELQ05823 741 aaKnown RBP18.99■□□□□ 0.63
SYNPO-201ENST00000307662 NSUN7Q8NE18 718 aaKnown RBP18.99■□□□□ 0.63
SYNPO-201ENST00000307662 UIMC1Q96RL1 719 aa18.99■□□□□ 0.63
SYNPO-201ENST00000307662 RNF14Q9UBS8 474 aa18.99■□□□□ 0.63
SYNPO-201ENST00000307662 BZW2Q9Y6E2 419 aaKnown RBP18.99■□□□□ 0.63
SYNPO-201ENST00000307662 MED23Q9ULK4 1368 aa18.99■□□□□ 0.63
SYNPO-201ENST00000307662 FAM170AA1A519 330 aa18.99■□□□□ 0.63
SYNPO-201ENST00000307662 CYP2J2P51589 502 aa18.99■□□□□ 0.63
SYNPO-201ENST00000307662 MIER3Q7Z3K6 550 aa18.99■□□□□ 0.63
SYNPO-201ENST00000307662 METTL14Q9HCE5 456 aaKnown RBP18.99■□□□□ 0.63
SYNPO-201ENST00000307662 PFDN1O60925 122 aa18.99■□□□□ 0.63
SYNPO-201ENST00000307662 ACRBPQ8NEB7 543 aa18.99■□□□□ 0.63
SYNPO-201ENST00000307662 N4BP2L2Q92802 583 aaPredicted RBP18.99■□□□□ 0.63
SYNPO-201ENST00000307662 RNF34Q969K3 372 aa18.99■□□□□ 0.63
SYNPO-201ENST00000307662 KLHL29Q96CT2 875 aa18.99■□□□□ 0.63
SYNPO-201ENST00000307662 SLC1A4P43007 532 aa18.98■□□□□ 0.63
SYNPO-201ENST00000307662 PTGDRQ13258 359 aa18.98■□□□□ 0.63
SYNPO-201ENST00000307662 NAA35Q5VZE5 725 aa18.98■□□□□ 0.63
SYNPO-201ENST00000307662 IL17REQ8NFR9 667 aa18.98■□□□□ 0.63
SYNPO-201ENST00000307662 C8orf37Q96NL8 207 aa18.98■□□□□ 0.63
SYNPO-201ENST00000307662 EYA3Q99504 573 aa18.98■□□□□ 0.63
SYNPO-201ENST00000307662 ARPP21Q9UBL0 812 aaPredicted RBP18.98■□□□□ 0.63
SYNPO-201ENST00000307662 ERBB4Q15303 1308 aa18.98■□□□□ 0.63
SYNPO-201ENST00000307662 DDX39AO00148 427 aaKnown RBP18.98■□□□□ 0.63
SYNPO-201ENST00000307662 N4BP1O75113 896 aaKnown RBP18.98■□□□□ 0.63
SYNPO-201ENST00000307662 THEGQ9P2T0 379 aa18.98■□□□□ 0.63
SYNPO-201ENST00000307662 FGAP02671 866 aa18.98■□□□□ 0.63
SYNPO-201ENST00000307662 SCG2P13521 617 aa18.98■□□□□ 0.63
SYNPO-201ENST00000307662 SPZ1Q9BXG8 430 aa18.98■□□□□ 0.63
SYNPO-201ENST00000307662 ARHGEF10LQ9HCE6 1279 aa18.98■□□□□ 0.63
SYNPO-201ENST00000307662 NEO1Q92859 1461 aa18.98■□□□□ 0.63
SYNPO-201ENST00000307662 CTNND1O60716 968 aaKnown RBP18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms