RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 CFAP58Q5T655 872 aa15.02■□□□□ -0
SKA3-201ENST00000298260 TMC4Q7Z404 712 aa15.02■□□□□ -0
SKA3-201ENST00000298260 DNAJC7Q99615 494 aa15.02■□□□□ -0
SKA3-201ENST00000298260 KDM6AO15550 1401 aaPredicted RBP15.02■□□□□ -0
SKA3-201ENST00000298260 MARF1Q9Y4F3 1742 aaKnown RBP15.02■□□□□ -0
SKA3-201ENST00000298260 TRIM75PA6NK02 468 aa15.02■□□□□ -0
SKA3-201ENST00000298260 ADAMTS3O15072 1205 aa15.02■□□□□ -0
SKA3-201ENST00000298260 BUB1O43683 1085 aa15.02■□□□□ -0
SKA3-201ENST00000298260 GCFC2P16383 781 aaKnown RBP15.02■□□□□ -0
SKA3-201ENST00000298260 MCAMP43121 646 aa15.02■□□□□ -0
SKA3-201ENST00000298260 CCDC181Q5TID7 509 aa15.02■□□□□ -0
SKA3-201ENST00000298260 CCDC70Q6NSX1 233 aa15.02■□□□□ -0
SKA3-201ENST00000298260 PARP9Q8IXQ6 854 aa15.02■□□□□ -0
SKA3-201ENST00000298260 FUKQ8N0W3 1084 aa15.02■□□□□ -0
SKA3-201ENST00000298260 ZNF579Q8NAF0 562 aaKnown RBP15.02■□□□□ -0
SKA3-201ENST00000298260 PIK3R5Q8WYR1 880 aa15.02■□□□□ -0
SKA3-201ENST00000298260 EPB41L5Q9HCM4 733 aa15.02■□□□□ -0
SKA3-201ENST00000298260 ZNF330Q9Y3S2 320 aaPredicted RBP15.02■□□□□ -0
SKA3-201ENST00000298260 EIF4E1BA6NMX2 242 aaKnown RBP15.02□□□□□ -0.01
SKA3-201ENST00000298260 BIRC2Q13490 618 aa15.02□□□□□ -0.01
SKA3-201ENST00000298260 MAATS1Q7Z4T9 603 aa15.02□□□□□ -0.01
SKA3-201ENST00000298260 STAG1Q8WVM7 1258 aa15.02□□□□□ -0.01
SKA3-201ENST00000298260 RPGRIP1Q96KN7 1286 aa15.02□□□□□ -0.01
SKA3-201ENST00000298260 OSBPL9Q96SU4 736 aa15.02□□□□□ -0.01
SKA3-201ENST00000298260 EME2A4GXA9 379 aaPredicted RBP15.01□□□□□ -0.01
SKA3-201ENST00000298260 PEX19P40855 299 aa15.01□□□□□ -0.01
SKA3-201ENST00000298260 KIF5AQ12840 1032 aa15.01□□□□□ -0.01
SKA3-201ENST00000298260 SNCBQ16143 134 aa15.01□□□□□ -0.01
SKA3-201ENST00000298260 HLFQ16534 295 aa15.01□□□□□ -0.01
SKA3-201ENST00000298260 RTN1Q16799 776 aa15.01□□□□□ -0.01
SKA3-201ENST00000298260 PTPROQ16827 1216 aa15.01□□□□□ -0.01
SKA3-201ENST00000298260 TYW1BQ6NUM6 668 aa15.01□□□□□ -0.01
SKA3-201ENST00000298260 C8orf74Q6P047 294 aa15.01□□□□□ -0.01
SKA3-201ENST00000298260 MMGT1Q8N4V1 131 aa15.01□□□□□ -0.01
SKA3-201ENST00000298260 RNF217Q8TC41 542 aa15.01□□□□□ -0.01
SKA3-201ENST00000298260 CYFIP2Q96F07 1278 aa15.01□□□□□ -0.01
SKA3-201ENST00000298260 AATFQ9NY61 560 aaKnown RBP eCLIP15.01□□□□□ -0.01
SKA3-201ENST00000298260 XIRP1Q702N8 1843 aaKnown RBP15.01□□□□□ -0.01
SKA3-201ENST00000298260 GOLGA6L7A0A1B0GV03 622 aa15.01□□□□□ -0.01
SKA3-201ENST00000298260 SEMA3EO15041 775 aa15.01□□□□□ -0.01
SKA3-201ENST00000298260 IFNAR1P17181 557 aa15.01□□□□□ -0.01
SKA3-201ENST00000298260 AMOTQ4VCS5 1084 aa15.01□□□□□ -0.01
SKA3-201ENST00000298260 WLSQ5T9L3 541 aa15.01□□□□□ -0.01
SKA3-201ENST00000298260 TRIM22Q8IYM9 498 aa15.01□□□□□ -0.01
SKA3-201ENST00000298260 FOXP1Q9H334 677 aaPredicted RBP15.01□□□□□ -0.01
SKA3-201ENST00000298260 PIH1D3Q9NQM4 214 aaKnown RBP15.01□□□□□ -0.01
SKA3-201ENST00000298260 BCCIPQ9P287 314 aaKnown RBP eCLIP15.01□□□□□ -0.01
SKA3-201ENST00000298260 RWDD2AQ9UIY3 292 aa15.01□□□□□ -0.01
SKA3-201ENST00000298260 PRKAB2O43741 272 aa15□□□□□ -0.01
SKA3-201ENST00000298260 IPO7O95373 1038 aaKnown RBP15□□□□□ -0.01
SKA3-201ENST00000298260 MDH1P40925 334 aaKnown RBP15□□□□□ -0.01
SKA3-201ENST00000298260 KRT83P78385 493 aa15□□□□□ -0.01
SKA3-201ENST00000298260 CCDC121Q6ZUS5 278 aa15□□□□□ -0.01
SKA3-201ENST00000298260 TEX11Q8IYF3 940 aa15□□□□□ -0.01
SKA3-201ENST00000298260 WDR3Q9UNX4 943 aaKnown RBP eCLIP15□□□□□ -0.01
SKA3-201ENST00000298260 AFDNP55196 1824 aaKnown RBP15□□□□□ -0.01
SKA3-201ENST00000298260 EPB41P11171 864 aaKnown RBP15□□□□□ -0.01
SKA3-201ENST00000298260 PTGDRQ13258 359 aa15□□□□□ -0.01
SKA3-201ENST00000298260 KDM7AQ6ZMT4 941 aa15□□□□□ -0.01
SKA3-201ENST00000298260 IQCKQ8N0W5 287 aa15□□□□□ -0.01
SKA3-201ENST00000298260 SYNE4Q8N205 404 aa15□□□□□ -0.01
SKA3-201ENST00000298260 THOC1Q96FV9 657 aaKnown RBP15□□□□□ -0.01
SKA3-201ENST00000298260 UBAC1Q9BSL1 405 aa15□□□□□ -0.01
SKA3-201ENST00000298260 CAPN11Q9UMQ6 739 aa15□□□□□ -0.01
SKA3-201ENST00000298260 PACSIN2Q9UNF0 486 aaPredicted RBP15□□□□□ -0.01
SKA3-201ENST00000298260 ZNF532Q9HCE3 1301 aa15□□□□□ -0.01
SKA3-201ENST00000298260 LTN1O94822 1766 aa14.99□□□□□ -0.01
SKA3-201ENST00000298260 HEXIM1O94992 359 aaKnown RBP14.99□□□□□ -0.01
SKA3-201ENST00000298260 UPP2O95045 317 aa14.99□□□□□ -0.01
SKA3-201ENST00000298260 TICAM2Q86XR7 235 aa14.99□□□□□ -0.01
SKA3-201ENST00000298260 CRACR2BQ8N4Y2 399 aaPredicted RBP14.99□□□□□ -0.01
SKA3-201ENST00000298260 KCNH5Q8NCM2 988 aa14.99□□□□□ -0.01
SKA3-201ENST00000298260 LRRC4CQ9HCJ2 640 aa14.99□□□□□ -0.01
SKA3-201ENST00000298260 C5P01031 1676 aa14.99□□□□□ -0.01
SKA3-201ENST00000298260 H7C1W4 665 aa14.99□□□□□ -0.01
SKA3-201ENST00000298260 EPHB6O15197 1021 aa14.99□□□□□ -0.01
SKA3-201ENST00000298260 IL17AQ16552 155 aa14.99□□□□□ -0.01
SKA3-201ENST00000298260 ALS2CLQ60I27 953 aa14.99□□□□□ -0.01
SKA3-201ENST00000298260 MICALCLQ6ZW33 695 aa14.99□□□□□ -0.01
SKA3-201ENST00000298260 EGFL6Q8IUX8 553 aa14.99□□□□□ -0.01
SKA3-201ENST00000298260 TRIM6Q9C030 488 aaPredicted RBP14.99□□□□□ -0.01
SKA3-201ENST00000298260 EPB41L4AQ9HCS5 686 aaPredicted RBP14.99□□□□□ -0.01
SKA3-201ENST00000298260 SLC4A4Q9Y6R1 1079 aa14.99□□□□□ -0.01
SKA3-201ENST00000298260 PP2D1A8MPX8 630 aa14.98□□□□□ -0.01
SKA3-201ENST00000298260 LGALS16A8MUM7 142 aa14.98□□□□□ -0.01
SKA3-201ENST00000298260 PPP1R12AO14974 1030 aaPredicted RBP14.98□□□□□ -0.01
SKA3-201ENST00000298260 CYLC1P35663 651 aaPredicted RBP14.98□□□□□ -0.01
SKA3-201ENST00000298260 TRIM14Q14142 442 aa14.98□□□□□ -0.01
SKA3-201ENST00000298260 EMBQ6PCB8 327 aa14.98□□□□□ -0.01
SKA3-201ENST00000298260 ZNF507Q8TCN5 953 aa14.98□□□□□ -0.01
SKA3-201ENST00000298260 TRIM47Q96LD4 638 aa14.98□□□□□ -0.01
SKA3-201ENST00000298260 IFIH1Q9BYX4 1025 aaKnown RBP14.98□□□□□ -0.01
SKA3-201ENST00000298260 PHF20L1A8MW92 1017 aa14.98□□□□□ -0.01
SKA3-201ENST00000298260 DCDC2CA8MYV0 355 aa14.98□□□□□ -0.01
SKA3-201ENST00000298260 FAM107AO95990 144 aa14.98□□□□□ -0.01
SKA3-201ENST00000298260 GBP2P32456 591 aaPredicted RBP14.98□□□□□ -0.01
SKA3-201ENST00000298260 MCM7P33993 719 aa14.98□□□□□ -0.01
SKA3-201ENST00000298260 C6orf89Q6UWU4 347 aa14.98□□□□□ -0.01
SKA3-201ENST00000298260 SGMS1Q86VZ5 419 aa14.98□□□□□ -0.01
SKA3-201ENST00000298260 SLC52A2Q9HAB3 445 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms