RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 ZKSCAN3Q9BRR0 538 aa17.01■□□□□ 0.31
HMGN3-201ENST00000275036 SENP6Q9GZR1 1112 aaPredicted RBP17.01■□□□□ 0.31
HMGN3-201ENST00000275036 RNF41Q9H4P4 317 aaPredicted RBP17.01■□□□□ 0.31
HMGN3-201ENST00000275036 RAD50Q92878 1312 aa17■□□□□ 0.31
HMGN3-201ENST00000275036 SNAI1O95863 264 aaPredicted RBP17■□□□□ 0.31
HMGN3-201ENST00000275036 OAZ1P54368 228 aa17■□□□□ 0.31
HMGN3-201ENST00000275036 PTH1RQ03431 593 aa17■□□□□ 0.31
HMGN3-201ENST00000275036 IKQ13123 557 aaPredicted RBP17■□□□□ 0.31
HMGN3-201ENST00000275036 DCAF4Q8WV16 495 aa17■□□□□ 0.31
HMGN3-201ENST00000275036 ESR2Q92731 530 aa17■□□□□ 0.31
HMGN3-201ENST00000275036 GDF15Q99988 308 aa17■□□□□ 0.31
HMGN3-201ENST00000275036 HOMER2Q9NSB8 354 aa17■□□□□ 0.31
HMGN3-201ENST00000275036 PRR12Q9ULL5 1215 aa17■□□□□ 0.31
HMGN3-201ENST00000275036 CTDP1Q9Y5B0 961 aaPredicted RBP17■□□□□ 0.31
HMGN3-201ENST00000275036 B4E1Z4 1266 aa16.99■□□□□ 0.31
HMGN3-201ENST00000275036 KDM4AO75164 1064 aa16.99■□□□□ 0.31
HMGN3-201ENST00000275036 ATN1P54259 1190 aaPredicted RBP16.99■□□□□ 0.31
HMGN3-201ENST00000275036 LRRC41Q15345 812 aa16.99■□□□□ 0.31
HMGN3-201ENST00000275036 IMMTQ16891 758 aaKnown RBP16.99■□□□□ 0.31
HMGN3-201ENST00000275036 CCDC96Q2M329 555 aa16.99■□□□□ 0.31
HMGN3-201ENST00000275036 TTC14Q96N46 770 aa16.99■□□□□ 0.31
HMGN3-201ENST00000275036 MYH6P13533 1939 aa16.99■□□□□ 0.31
HMGN3-201ENST00000275036 LRRC37A2A6NM11 1700 aa16.99■□□□□ 0.31
HMGN3-201ENST00000275036 FRMPD2Q68DX3 1309 aaPredicted RBP16.98■□□□□ 0.31
HMGN3-201ENST00000275036 ADCY6O43306 1168 aa16.98■□□□□ 0.31
HMGN3-201ENST00000275036 FDX1P10109 184 aa16.98■□□□□ 0.31
HMGN3-201ENST00000275036 PDHBP11177 359 aa16.98■□□□□ 0.31
HMGN3-201ENST00000275036 SLC16A2P36021 539 aa16.98■□□□□ 0.31
HMGN3-201ENST00000275036 MAGEA10P43363 369 aaPredicted RBP16.98■□□□□ 0.31
HMGN3-201ENST00000275036 CCDC174Q6PII3 467 aa16.98■□□□□ 0.31
HMGN3-201ENST00000275036 MAMDC4Q6UXC1 1216 aa16.98■□□□□ 0.31
HMGN3-201ENST00000275036 BTNL9Q6UXG8 535 aa16.98■□□□□ 0.31
HMGN3-201ENST00000275036 CHST13Q8NET6 341 aa16.98■□□□□ 0.31
HMGN3-201ENST00000275036 DDX11Q96FC9 970 aa16.98■□□□□ 0.31
HMGN3-201ENST00000275036 ZSWIM5Q9P217 1185 aa16.98■□□□□ 0.31
HMGN3-201ENST00000275036 NRBP1Q9UHY1 535 aa16.98■□□□□ 0.31
HMGN3-201ENST00000275036 CTNNA3Q9UI47 895 aa16.98■□□□□ 0.31
HMGN3-201ENST00000275036 ASTN1O14525 1302 aa16.97■□□□□ 0.31
HMGN3-201ENST00000275036 SYNGAP1Q96PV0 1343 aa16.97■□□□□ 0.31
HMGN3-201ENST00000275036 SOX1O00570 391 aaPredicted RBP16.97■□□□□ 0.31
HMGN3-201ENST00000275036 SGSM2O43147 1006 aa16.97■□□□□ 0.31
HMGN3-201ENST00000275036 SNHG28P0DPA3 235 aa16.97■□□□□ 0.31
HMGN3-201ENST00000275036 CNTN2Q02246 1040 aa16.97■□□□□ 0.31
HMGN3-201ENST00000275036 MUM1L1Q5H9M0 696 aa16.97■□□□□ 0.31
HMGN3-201ENST00000275036 ANKRD35Q8N283 1001 aa16.97■□□□□ 0.31
HMGN3-201ENST00000275036 GPCPD1Q9NPB8 672 aa16.97■□□□□ 0.31
HMGN3-201ENST00000275036 A1CFQ9NQ94 594 aaKnown RBP16.97■□□□□ 0.31
HMGN3-201ENST00000275036 RNF146Q9NTX7 359 aa16.97■□□□□ 0.31
HMGN3-201ENST00000275036 TAF6LQ9Y6J9 622 aa16.97■□□□□ 0.31
HMGN3-201ENST00000275036 DDX49Q9Y6V7 483 aaKnown RBP16.97■□□□□ 0.31
HMGN3-201ENST00000275036 LTBP2Q14767 1821 aa16.97■□□□□ 0.31
HMGN3-201ENST00000275036 PGK1P00558 417 aa16.96■□□□□ 0.31
HMGN3-201ENST00000275036 MYCNP04198 464 aaPredicted RBP16.96■□□□□ 0.31
HMGN3-201ENST00000275036 IRX5P78411 483 aaPredicted RBP16.96■□□□□ 0.31
HMGN3-201ENST00000275036 CENPQQ7L2Z9 268 aaPredicted RBP16.96■□□□□ 0.31
HMGN3-201ENST00000275036 ZNF467Q7Z7K2 595 aaPredicted RBP16.96■□□□□ 0.31
HMGN3-201ENST00000275036 DGKHQ86XP1 1220 aa16.96■□□□□ 0.31
HMGN3-201ENST00000275036 MSL3Q8N5Y2 521 aaKnown RBP16.96■□□□□ 0.31
HMGN3-201ENST00000275036 ARRDC4Q8NCT1 418 aa16.96■□□□□ 0.31
HMGN3-201ENST00000275036 RUFY2Q8WXA3 655 aa16.96■□□□□ 0.31
HMGN3-201ENST00000275036 KATNBL1Q9H079 304 aa16.96■□□□□ 0.31
HMGN3-201ENST00000275036 RANBP17Q9H2T7 1088 aaKnown RBP16.96■□□□□ 0.31
HMGN3-201ENST00000275036 ACAD9Q9H845 621 aa16.96■□□□□ 0.31
HMGN3-201ENST00000275036 XPNPEP3Q9NQH7 507 aa16.96■□□□□ 0.31
HMGN3-201ENST00000275036 FBXO40Q9UH90 709 aa16.96■□□□□ 0.31
HMGN3-201ENST00000275036 SOWAHBA6NEL2 793 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 KBTBD13C9JR72 458 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 ADAMTS4O75173 837 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 CYP21A2P08686 494 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 RARBP10826 455 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 ALAS1P13196 640 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 AKR1A1P14550 325 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 BMP8BP34820 402 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 ADCYAP1R1P41586 468 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 NT5C2P49902 561 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 RTP1P59025 263 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 ZNF543Q08ER8 600 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 SNX17Q15036 470 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 SYDE2Q5VT97 1194 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 SLC39A5Q6ZMH5 540 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 ENAHQ8N8S7 591 aaPredicted RBP16.95■□□□□ 0.3
HMGN3-201ENST00000275036 FAM133AQ8N9E0 248 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 ANKS1AQ92625 1134 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 FERMT2Q96AC1 680 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 TRERF1Q96PN7 1200 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 ZSCAN10Q96SZ4 725 aaPredicted RBP16.95■□□□□ 0.3
HMGN3-201ENST00000275036 KRT23Q9C075 422 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.95■□□□□ 0.3
HMGN3-201ENST00000275036 ZHX1Q9UKY1 873 aaPredicted RBP16.95■□□□□ 0.3
HMGN3-201ENST00000275036 CNPY2Q9Y2B0 182 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 SYNRGQ9UMZ2 1314 aa16.95■□□□□ 0.3
HMGN3-201ENST00000275036 BAZ2BQ9UIF8 2168 aaKnown RBP16.94■□□□□ 0.3
HMGN3-201ENST00000275036 MYADML2A6NDP7 307 aa16.94■□□□□ 0.3
HMGN3-201ENST00000275036 GOLGA8HP0CJ92 632 aa16.94■□□□□ 0.3
HMGN3-201ENST00000275036 CYB5R4Q7L1T6 521 aa16.94■□□□□ 0.3
HMGN3-201ENST00000275036 ARMCX2Q7L311 632 aa16.94■□□□□ 0.3
HMGN3-201ENST00000275036 IQCA1Q86XH1 822 aa16.94■□□□□ 0.3
HMGN3-201ENST00000275036 PNMA1Q8ND90 353 aa16.94■□□□□ 0.3
HMGN3-201ENST00000275036 PURBQ96QR8 312 aaKnown RBP16.94■□□□□ 0.3
HMGN3-201ENST00000275036 CPVLQ9H3G5 476 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms