RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 BMP15O95972 392 aa18.71■□□□□ 0.59
VPS54-201ENST00000272322 RCAN1P53805 252 aa18.71■□□□□ 0.59
VPS54-201ENST00000272322 CACNB1Q02641 598 aaPredicted RBP18.71■□□□□ 0.59
VPS54-201ENST00000272322 TTBK2Q6IQ55 1244 aa18.71■□□□□ 0.59
VPS54-201ENST00000272322 DGKHQ86XP1 1220 aa18.71■□□□□ 0.59
VPS54-201ENST00000272322 POTEDQ86YR6 584 aa18.71■□□□□ 0.59
VPS54-201ENST00000272322 DRC1Q96MC2 740 aa18.71■□□□□ 0.59
VPS54-201ENST00000272322 PCDHAC2Q9Y5I4 1007 aa18.71■□□□□ 0.59
VPS54-201ENST00000272322 TAL1P17542 331 aaPredicted RBP18.71■□□□□ 0.59
VPS54-201ENST00000272322 STK4Q13043 487 aa18.71■□□□□ 0.59
VPS54-201ENST00000272322 TCP11X2Q5H9J9 407 aa18.71■□□□□ 0.59
VPS54-201ENST00000272322 DPP8Q6V1X1 898 aaPredicted RBP18.71■□□□□ 0.59
VPS54-201ENST00000272322 CAPZA3Q96KX2 299 aa18.71■□□□□ 0.59
VPS54-201ENST00000272322 ZHX3Q9H4I2 956 aa18.71■□□□□ 0.59
VPS54-201ENST00000272322 SUGCTQ9HAC7 445 aa18.71■□□□□ 0.59
VPS54-201ENST00000272322 TCP11L1Q9NUJ3 509 aa18.71■□□□□ 0.59
VPS54-201ENST00000272322 STXBP3O00186 592 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 MRPS25P82663 173 aaKnown RBP18.7■□□□□ 0.58
VPS54-201ENST00000272322 KCTD1Q719H9 257 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 CABP7Q86V35 215 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 PRDM4Q9UKN5 801 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 TTC26A0AVF1 554 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 TADA3O75528 432 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 CYP27A1Q02318 531 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 CDKAL1Q5VV42 579 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 CSGALNACT2Q8N6G5 542 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 C4orf32Q8N8J7 132 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 HDAC6Q9UBN7 1215 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 CNTNAP4Q9C0A0 1308 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 TRIM37O94972 964 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 RBM5P52756 815 aaKnown RBP eCLIP18.7■□□□□ 0.58
VPS54-201ENST00000272322 MCM6Q14566 821 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 SBK1Q52WX2 424 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 MSL1Q68DK7 614 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 TRERF1Q96PN7 1200 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 RTFDC1Q9BY42 306 aaPredicted RBP18.7■□□□□ 0.58
VPS54-201ENST00000272322 KCNQ5Q9NR82 932 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 AGPAT5Q9NUQ2 364 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 COL14A1Q05707 1796 aaKnown RBP18.7■□□□□ 0.58
VPS54-201ENST00000272322 ANKRD36CQ5JPF3 1778 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 CHD4Q14839 1912 aa18.7■□□□□ 0.58
VPS54-201ENST00000272322 SRGAP2O75044 1071 aa18.69■□□□□ 0.58
VPS54-201ENST00000272322 TDP2O95551 362 aa18.69■□□□□ 0.58
VPS54-201ENST00000272322 DNA2P51530 1060 aa18.69■□□□□ 0.58
VPS54-201ENST00000272322 CCDC96Q2M329 555 aa18.69■□□□□ 0.58
VPS54-201ENST00000272322 ZNF658Q5TYW1 1059 aaPredicted RBP18.69■□□□□ 0.58
VPS54-201ENST00000272322 PSMB7Q99436 277 aa18.69■□□□□ 0.58
VPS54-201ENST00000272322 MKRN1Q9UHC7 482 aaKnown RBP18.69■□□□□ 0.58
VPS54-201ENST00000272322 PHLPP2Q6ZVD8 1323 aa18.69■□□□□ 0.58
VPS54-201ENST00000272322 MYH6P13533 1939 aa18.69■□□□□ 0.58
VPS54-201ENST00000272322 TRIM21P19474 475 aaKnown RBP18.69■□□□□ 0.58
VPS54-201ENST00000272322 MTIF2P46199 727 aaKnown RBP18.69■□□□□ 0.58
VPS54-201ENST00000272322 GRM4Q14833 912 aa18.69■□□□□ 0.58
VPS54-201ENST00000272322 DMTNQ08495 405 aa18.69■□□□□ 0.58
VPS54-201ENST00000272322 NCAPH2Q6IBW4 605 aa18.69■□□□□ 0.58
VPS54-201ENST00000272322 ZSCAN29Q8IWY8 852 aaPredicted RBP18.69■□□□□ 0.58
VPS54-201ENST00000272322 PARD6BQ9BYG5 372 aa18.69■□□□□ 0.58
VPS54-201ENST00000272322 BARHL2Q9NY43 387 aa18.69■□□□□ 0.58
VPS54-201ENST00000272322 CACNA1SQ13698 1873 aa18.68■□□□□ 0.58
VPS54-201ENST00000272322 FLT1P17948 1338 aa18.68■□□□□ 0.58
VPS54-201ENST00000272322 COL16A1Q07092 1604 aaPredicted RBP18.68■□□□□ 0.58
VPS54-201ENST00000272322 LDHCP07864 332 aa18.68■□□□□ 0.58
VPS54-201ENST00000272322 AKR1B1P15121 316 aa18.68■□□□□ 0.58
VPS54-201ENST00000272322 FKBP15Q5T1M5 1219 aa18.68■□□□□ 0.58
VPS54-201ENST00000272322 RRP36Q96EU6 259 aaKnown RBP18.68■□□□□ 0.58
VPS54-201ENST00000272322 PNMA6AP0CW24 399 aaPredicted RBP18.68■□□□□ 0.58
VPS54-201ENST00000272322 GLIS3Q8NEA6 775 aa18.68■□□□□ 0.58
VPS54-201ENST00000272322 CTAGE1Q96RT6 745 aa18.68■□□□□ 0.58
VPS54-201ENST00000272322 ABHD10Q9NUJ1 306 aa18.68■□□□□ 0.58
VPS54-201ENST00000272322 MAGEC2Q9UBF1 373 aaPredicted RBP18.68■□□□□ 0.58
VPS54-201ENST00000272322 KCTD19Q17RG1 926 aaPredicted RBP18.68■□□□□ 0.58
VPS54-201ENST00000272322 IRF2BP1Q8IU81 584 aa18.68■□□□□ 0.58
VPS54-201ENST00000272322 NID2Q14112 1375 aa18.67■□□□□ 0.58
VPS54-201ENST00000272322 PCNTO95613 3336 aa18.67■□□□□ 0.58
VPS54-201ENST00000272322 NHSL1Q5SYE7 1610 aa18.67■□□□□ 0.58
VPS54-201ENST00000272322 ZMYND10O75800 440 aa18.67■□□□□ 0.58
VPS54-201ENST00000272322 LONP1P36776 959 aaKnown RBP18.67■□□□□ 0.58
VPS54-201ENST00000272322 NONOQ15233 471 aaKnown RBP eCLIP18.67■□□□□ 0.58
VPS54-201ENST00000272322 NUDT12Q9BQG2 462 aa18.67■□□□□ 0.58
VPS54-201ENST00000272322 TTF2Q9UNY4 1162 aaKnown RBP18.67■□□□□ 0.58
VPS54-201ENST00000272322 DUSP10Q9Y6W6 482 aa18.67■□□□□ 0.58
VPS54-201ENST00000272322 DDX60Q8IY21 1712 aaKnown RBP18.67■□□□□ 0.58
VPS54-201ENST00000272322 PCP11498 1178 aaKnown RBP18.67■□□□□ 0.58
VPS54-201ENST00000272322 SYCP1Q15431 976 aa18.67■□□□□ 0.58
VPS54-201ENST00000272322 FAM207AQ9NSI2 230 aaPredicted RBP18.67■□□□□ 0.58
VPS54-201ENST00000272322 ARGLU1Q9NWB6 273 aaPredicted RBP18.67■□□□□ 0.58
VPS54-201ENST00000272322 LEMD3Q9Y2U8 911 aa18.67■□□□□ 0.58
VPS54-201ENST00000272322 DUOX1Q9NRD9 1551 aa18.67■□□□□ 0.58
VPS54-201ENST00000272322 MACROD2A1Z1Q3 448 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 GSTO1P78417 241 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 TBC1D8BQ0IIM8 1120 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 VPS72Q15906 364 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 CCDC148Q8NFR7 591 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 KIFC2Q96AC6 838 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 CDK5RAP3Q96JB5 506 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 ZFP91Q96JP5 570 aaPredicted RBP18.66■□□□□ 0.58
VPS54-201ENST00000272322 EXOC1Q9NV70 894 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 RWDD2AQ9UIY3 292 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 PHACTR2O75167 634 aa18.66■□□□□ 0.58
VPS54-201ENST00000272322 MAP3K9P80192 1104 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms