RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 MLXIPQ9HAP2 919 aa15.22■□□□□ 0.03
LDLR-201ENST00000252444 XRRA1Q6P2D8 792 aa15.22■□□□□ 0.03
LDLR-201ENST00000252444 MAP3K20Q9NYL2 800 aaKnown RBP15.22■□□□□ 0.03
LDLR-201ENST00000252444 GPR75-ASB3A0A0A6YYF3 556 aa15.22■□□□□ 0.03
LDLR-201ENST00000252444 ZBTB5O15062 677 aa15.22■□□□□ 0.03
LDLR-201ENST00000252444 USH1GQ495M9 461 aa15.22■□□□□ 0.03
LDLR-201ENST00000252444 NOD1Q9Y239 953 aa15.22■□□□□ 0.03
LDLR-201ENST00000252444 LARSQ9P2J5 1176 aaKnown RBP15.22■□□□□ 0.03
LDLR-201ENST00000252444 XPOTO43592 962 aaKnown RBP15.21■□□□□ 0.03
LDLR-201ENST00000252444 AKR1B10O60218 316 aa15.21■□□□□ 0.03
LDLR-201ENST00000252444 PFKFB3Q16875 520 aaPredicted RBP15.21■□□□□ 0.03
LDLR-201ENST00000252444 GSDMAQ96QA5 445 aa15.21■□□□□ 0.03
LDLR-201ENST00000252444 ZSWIM5Q9P217 1185 aa15.21■□□□□ 0.03
LDLR-201ENST00000252444 PALD1Q9ULE6 856 aa15.21■□□□□ 0.03
LDLR-201ENST00000252444 WDR46O15213 610 aaKnown RBP15.21■□□□□ 0.03
LDLR-201ENST00000252444 KRT86O43790 486 aa15.21■□□□□ 0.03
LDLR-201ENST00000252444 HOXD10P28358 340 aa15.21■□□□□ 0.03
LDLR-201ENST00000252444 RNF181Q9P0P0 153 aa15.21■□□□□ 0.03
LDLR-201ENST00000252444 CACNA1FO60840 1977 aa15.21■□□□□ 0.03
LDLR-201ENST00000252444 PHRF1Q9P1Y6 1649 aaKnown RBP15.21■□□□□ 0.03
LDLR-201ENST00000252444 TACC1O75410 805 aa15.21■□□□□ 0.03
LDLR-201ENST00000252444 LMNB1P20700 586 aa15.21■□□□□ 0.03
LDLR-201ENST00000252444 CTR9Q6PD62 1173 aa15.21■□□□□ 0.03
LDLR-201ENST00000252444 CPXCR1Q8N123 301 aa15.21■□□□□ 0.03
LDLR-201ENST00000252444 IL1R1P14778 569 aa15.21■□□□□ 0.02
LDLR-201ENST00000252444 RETREG2Q8NC44 543 aa15.21■□□□□ 0.02
LDLR-201ENST00000252444 NOX5Q96PH1 765 aa15.21■□□□□ 0.02
LDLR-201ENST00000252444 FAM205AQ6ZU69 1335 aa15.21■□□□□ 0.02
LDLR-201ENST00000252444 CLRN2A0PK11 232 aa15.2■□□□□ 0.02
LDLR-201ENST00000252444 NACC1Q96RE7 527 aa15.2■□□□□ 0.02
LDLR-201ENST00000252444 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.2■□□□□ 0.02
LDLR-201ENST00000252444 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.2■□□□□ 0.02
LDLR-201ENST00000252444 BIN2Q9UBW5 565 aaPredicted RBP15.2■□□□□ 0.02
LDLR-201ENST00000252444 ZNF215Q9UL58 517 aaPredicted RBP15.2■□□□□ 0.02
LDLR-201ENST00000252444 LRP6O75581 1613 aa15.2■□□□□ 0.02
LDLR-201ENST00000252444 USP17L10C9JJH3 530 aa15.2■□□□□ 0.02
LDLR-201ENST00000252444 CCDC175P0C221 793 aa15.2■□□□□ 0.02
LDLR-201ENST00000252444 ATF7P17544 494 aaPredicted RBP15.2■□□□□ 0.02
LDLR-201ENST00000252444 SURF1Q15526 300 aa15.2■□□□□ 0.02
LDLR-201ENST00000252444 PSMD1Q99460 953 aa15.2■□□□□ 0.02
LDLR-201ENST00000252444 PANK2Q9BZ23 570 aa15.2■□□□□ 0.02
LDLR-201ENST00000252444 GSG1L2A8MUP6 293 aa15.2■□□□□ 0.02
LDLR-201ENST00000252444 ZYXQ15942 572 aaKnown RBP15.2■□□□□ 0.02
LDLR-201ENST00000252444 C16orf86Q6ZW13 317 aa15.2■□□□□ 0.02
LDLR-201ENST00000252444 MYL10Q9BUA6 226 aa15.2■□□□□ 0.02
LDLR-201ENST00000252444 TIPINQ9BVW5 301 aa15.2■□□□□ 0.02
LDLR-201ENST00000252444 PRM3Q9NNZ6 103 aa15.2■□□□□ 0.02
LDLR-201ENST00000252444 RIC8AQ9NPQ8 531 aa15.2■□□□□ 0.02
LDLR-201ENST00000252444 DAAM1Q9Y4D1 1078 aa15.2■□□□□ 0.02
LDLR-201ENST00000252444 SLIT2O94813 1529 aa15.2■□□□□ 0.02
LDLR-201ENST00000252444 FRMPD2Q68DX3 1309 aaPredicted RBP15.2■□□□□ 0.02
LDLR-201ENST00000252444 HOXC6P09630 235 aa15.2■□□□□ 0.02
LDLR-201ENST00000252444 KCNQ4P56696 695 aa15.2■□□□□ 0.02
LDLR-201ENST00000252444 KIF23Q02241 960 aaPredicted RBP15.2■□□□□ 0.02
LDLR-201ENST00000252444 FAM20AQ96MK3 541 aa15.2■□□□□ 0.02
LDLR-201ENST00000252444 AP5M1Q9H0R1 490 aa15.2■□□□□ 0.02
LDLR-201ENST00000252444 LUC7L2Q9Y383 392 aaKnown RBP15.2■□□□□ 0.02
LDLR-201ENST00000252444 USP17L15C9J2P7 530 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 USP17L13C9JLJ4 530 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 USP17L11C9JVI0 530 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 USP17L18D6R9N7 530 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 USP17L22D6RA61 530 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 USP17L17D6RBQ6 530 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 USP17L19D6RCP7 530 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 USP17L20D6RJB6 530 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 JAK2O60674 1132 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 USP17L24Q0WX57 530 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 FKBP1CQ5VVH2 108 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 POLR2DO15514 142 aaKnown RBP15.19■□□□□ 0.02
LDLR-201ENST00000252444 FGFR2P21802 821 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 PPP4R3CPQ6ZMV5 832 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 TBC1D22BQ9NU19 505 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 KCNJ14Q9UNX9 436 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 DAGLAQ9Y4D2 1042 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 DUOX1Q9NRD9 1551 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 PSAPP07602 524 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 ERCC5P28715 1186 aaPredicted RBP15.19■□□□□ 0.02
LDLR-201ENST00000252444 SFNP31947 248 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 DIXDC1Q155Q3 683 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 NCAPG2Q86XI2 1143 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 COL23A1Q86Y22 540 aaPredicted RBP15.19■□□□□ 0.02
LDLR-201ENST00000252444 RASEFQ8IZ41 740 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 DEPTORQ8TB45 409 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 DNAJC25Q9H1X3 360 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 TRAF5O00463 557 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 ZBTB7AO95365 584 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 BCRP11274 1271 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 LIG1P18858 919 aa15.19■□□□□ 0.02
LDLR-201ENST00000252444 MYOCDQ8IZQ8 938 aa15.18■□□□□ 0.02
LDLR-201ENST00000252444 DHTKD1Q96HY7 919 aaPredicted RBP15.18■□□□□ 0.02
LDLR-201ENST00000252444 TMEM206Q9H813 350 aa15.18■□□□□ 0.02
LDLR-201ENST00000252444 RCOR1Q9UKL0 485 aa15.18■□□□□ 0.02
LDLR-201ENST00000252444 PRDX5P30044 214 aa15.18■□□□□ 0.02
LDLR-201ENST00000252444 UBXN1Q04323 297 aa15.18■□□□□ 0.02
LDLR-201ENST00000252444 PRIMPOLQ96LW4 560 aa15.18■□□□□ 0.02
LDLR-201ENST00000252444 RASAL2Q9UJF2 1139 aa15.18■□□□□ 0.02
LDLR-201ENST00000252444 ADD1P35611 737 aaKnown RBP15.18■□□□□ 0.02
LDLR-201ENST00000252444 KRBA2Q6ZNG9 492 aa15.18■□□□□ 0.02
LDLR-201ENST00000252444 HAUS2Q9NVX0 235 aa15.18■□□□□ 0.02
LDLR-201ENST00000252444 ATRNO75882 1429 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms