RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 SLC7A5Q01650 507 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 LETM2Q2VYF4 491 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 TNNI3KQ59H18 835 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 ELAC2Q9BQ52 826 aaKnown RBP11.43□□□□□ -0.58
VCL-201ENST00000211998 ARHGEF10LQ9HCE6 1279 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 ATP8A1Q9Y2Q0 1164 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 FPGT-TNNI3KV9GXZ4 949 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 COL17A1Q9UMD9 1497 aaPredicted RBP11.43□□□□□ -0.58
VCL-201ENST00000211998 B4E1Z4 1266 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 PER1O15534 1290 aaPredicted RBP11.43□□□□□ -0.58
VCL-201ENST00000211998 GCFC2P16383 781 aaKnown RBP11.43□□□□□ -0.58
VCL-201ENST00000211998 TRIML1Q8N9V2 468 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 HOOK2Q96ED9 719 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 DKC1O60832 514 aaKnown RBP eCLIP11.43□□□□□ -0.58
VCL-201ENST00000211998 PCYT1AP49585 367 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 PPP2R5BQ15173 497 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 HAUS3Q68CZ6 603 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 U2AF1L4Q8WU68 220 aaKnown RBP11.43□□□□□ -0.58
VCL-201ENST00000211998 PFDN4Q9NQP4 134 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 FAM170AA1A519 330 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 BACH1O14867 736 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 CRCPO75575 148 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 ADCY1Q08828 1119 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 ZNF449Q6P9G9 518 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 PPP4R1Q8TF05 950 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 MAIP1Q8WWC4 291 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 CCT6BQ92526 530 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 CALR3Q96L12 384 aaKnown RBP11.43□□□□□ -0.58
VCL-201ENST00000211998 BTG4Q9NY30 223 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 ANGEL1Q9UNK9 670 aaKnown RBP11.43□□□□□ -0.58
VCL-201ENST00000211998 SSH2Q76I76 1423 aa11.43□□□□□ -0.58
VCL-201ENST00000211998 USP27XA6NNY8 438 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 SART1O43290 800 aaKnown RBP11.42□□□□□ -0.58
VCL-201ENST00000211998 UFL1O94874 794 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 CHGBP05060 677 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 PDCD2Q16342 344 aaPredicted RBP11.42□□□□□ -0.58
VCL-201ENST00000211998 CAPN12Q6ZSI9 719 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 AFAP1L2Q8N4X5 818 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 PDZD8Q8NEN9 1154 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 APPBP2Q92624 585 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 LSM14BQ9BX40 385 aaKnown RBP11.42□□□□□ -0.58
VCL-201ENST00000211998 MAST1Q9Y2H9 1570 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 RWDD2BP57060 319 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 RASA3Q14644 834 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 ANKRD20A4Q4UJ75 823 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 ANKRD20A8PQ5CZ79 823 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 ANKRD20A2Q5SQ80 823 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 ANKRD20A1Q5TYW2 823 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 NAA35Q5VZE5 725 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 DTNBP1Q96EV8 351 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 CFAP43Q8NDM7 1665 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 VSTM4Q8IW00 320 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 CTAGE3PQ8IX95 158 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 GGA1Q9UJY5 639 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 KCNJ14Q9UNX9 436 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 LMNAP02545 664 aaKnown RBP11.42□□□□□ -0.58
VCL-201ENST00000211998 SLFN14P0C7P3 912 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 CXCR5P32302 372 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 RASSF7Q02833 373 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 DHX9Q08211 1270 aaKnown RBP11.42□□□□□ -0.58
VCL-201ENST00000211998 PALM2Q8IXS6 379 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 CARD14Q9BXL6 1004 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 BATF3Q9NR55 127 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 CCNL1Q9UK58 526 aaPredicted RBP11.42□□□□□ -0.58
VCL-201ENST00000211998 PRDM4Q9UKN5 801 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 PAIP2BQ9ULR5 123 aaKnown RBP11.42□□□□□ -0.58
VCL-201ENST00000211998 USTQ9Y2C2 406 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 LMTK3Q96Q04 1460 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 NCKAP5LQ9HCH0 1330 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 CA8P35219 290 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 COPB1P53618 953 aaKnown RBP11.42□□□□□ -0.58
VCL-201ENST00000211998 RBM26Q5T8P6 1007 aaKnown RBP11.42□□□□□ -0.58
VCL-201ENST00000211998 USP6NLQ92738 828 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 ZSWIM6Q9HCJ5 1215 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 STK32BQ9NY57 414 aa11.42□□□□□ -0.58
VCL-201ENST00000211998 BLMP54132 1417 aaPredicted RBP11.41□□□□□ -0.58
VCL-201ENST00000211998 CALUO43852 315 aaPredicted RBP11.41□□□□□ -0.58
VCL-201ENST00000211998 ABCB4P21439 1286 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 LIN9Q5TKA1 542 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 EMBQ6PCB8 327 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 DPH6Q7L8W6 267 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 RUNDC3BQ96NL0 473 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 ARHGEF10O15013 1369 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 ATICP31939 592 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 SMTNP53814 917 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 MRPS9P82933 396 aaKnown RBP11.41□□□□□ -0.58
VCL-201ENST00000211998 ARHGEF18Q6ZSZ5 1173 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 CLIC4Q9Y696 253 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 PHBP35232 272 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 DYMQ7RTS9 669 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 NLRP14Q86W24 1093 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 TMOD4Q9NZQ9 345 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 H7C1D1 291 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 CUL4AQ13619 759 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 WDR44Q5JSH3 913 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 ARHGAP18Q8N392 663 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 TRIML2Q8N7C3 387 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 SUPT20HQ8NEM7 779 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 GDAP1Q8TB36 358 aa11.41□□□□□ -0.58
VCL-201ENST00000211998 DACT3Q96B18 629 aaPredicted RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms