RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 ADCY7P51828 1080 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 FKBP1AP62942 108 aaKnown RBP9.33□□□□□ -0.92
VAMP3-201ENST00000054666 CUL4BQ13620 913 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 CCDC96Q2M329 555 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 GPATCH4Q5T3I0 446 aaKnown RBP9.33□□□□□ -0.92
VAMP3-201ENST00000054666 PPP1R18Q6NYC8 613 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 STAMQ92783 540 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 CCDC47Q96A33 483 aaKnown RBP9.33□□□□□ -0.92
VAMP3-201ENST00000054666 CCDC17Q96LX7 622 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 MXD3Q9BW11 206 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 EHD4Q9H223 541 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 TMEM60Q9H2L4 133 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 CUEDC2Q9H467 287 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 SAMSN1Q9NSI8 373 aaKnown RBP9.33□□□□□ -0.92
VAMP3-201ENST00000054666 RPN1P04843 607 aaKnown RBP9.33□□□□□ -0.92
VAMP3-201ENST00000054666 SNHG28P0DPA3 235 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 RBM5P52756 815 aaKnown RBP eCLIP9.33□□□□□ -0.92
VAMP3-201ENST00000054666 STX17P56962 302 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 ATP2B2Q01814 1243 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 SPAG1Q07617 926 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 PAK1Q13153 545 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 STIM1Q13586 685 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 ZNF658Q5TYW1 1059 aaPredicted RBP9.33□□□□□ -0.92
VAMP3-201ENST00000054666 STRIP1Q5VSL9 837 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 NYAP1Q6ZVC0 841 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 SMYD4Q8IYR2 804 aaPredicted RBP9.33□□□□□ -0.92
VAMP3-201ENST00000054666 ZDHHC15Q96MV8 337 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 CCSER1Q9C0I3 900 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 UBA5Q9GZZ9 404 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 DHX36Q9H2U1 1008 aaKnown RBP9.33□□□□□ -0.92
VAMP3-201ENST00000054666 INTS13Q9NVM9 706 aa9.33□□□□□ -0.92
VAMP3-201ENST00000054666 ECE2O60344 883 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 TUBB4AP04350 444 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 CD44P16070 742 aaKnown RBP9.32□□□□□ -0.92
VAMP3-201ENST00000054666 SHMT1P34896 483 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 RBM10P98175 930 aaKnown RBP9.32□□□□□ -0.92
VAMP3-201ENST00000054666 ZNF543Q08ER8 600 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 SEMA3FQ13275 785 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 APOBEC3HQ6NTF7 200 aaKnown RBP9.32□□□□□ -0.92
VAMP3-201ENST00000054666 FCHSD1Q86WN1 690 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 KIAA0825Q8IV33 1275 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 KIF18AQ8NI77 898 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 TBCKQ8TEA7 893 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 CNKSR1Q969H4 720 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 PPP1R13BQ96KQ4 1090 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 GPCPD1Q9NPB8 672 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 RWDD2AQ9UIY3 292 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 TNS1Q9HBL0 1735 aaKnown RBP9.32□□□□□ -0.92
VAMP3-201ENST00000054666 MYH4Q9Y623 1939 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 A0A1B0GTH6 734 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 PPP1R3GB7ZBB8 358 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 ARHGAP6O43182 974 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 ZSCAN12O43309 604 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 TPM1P09493 284 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 CDC25AP30304 524 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 HDLBPQ00341 1268 aaKnown RBP9.32□□□□□ -0.92
VAMP3-201ENST00000054666 TMEM266Q2M3C6 531 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 JAKMIP3Q5VZ66 844 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 E4F1Q66K89 784 aaPredicted RBP9.32□□□□□ -0.92
VAMP3-201ENST00000054666 CABP7Q86V35 215 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 CLEC10AQ8IUN9 316 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 ZSCAN29Q8IWY8 852 aaPredicted RBP9.32□□□□□ -0.92
VAMP3-201ENST00000054666 RAB34Q9BZG1 259 aa9.32□□□□□ -0.92
VAMP3-201ENST00000054666 BIN2Q9UBW5 565 aaPredicted RBP9.32□□□□□ -0.92
VAMP3-201ENST00000054666 GREB1LQ9C091 1923 aaPredicted RBP9.31□□□□□ -0.92
VAMP3-201ENST00000054666 PNMA6FA0A0J9YX94 578 aa9.31□□□□□ -0.92
VAMP3-201ENST00000054666 RXRBP28702 533 aa9.31□□□□□ -0.92
VAMP3-201ENST00000054666 NFIAQ12857 509 aa9.31□□□□□ -0.92
VAMP3-201ENST00000054666 CDKAL1Q5VV42 579 aa9.31□□□□□ -0.92
VAMP3-201ENST00000054666 PPFIBP1Q86W92 1011 aa9.31□□□□□ -0.92
VAMP3-201ENST00000054666 NELFBQ8WX92 580 aa9.31□□□□□ -0.92
VAMP3-201ENST00000054666 CALML4Q96GE6 196 aa9.31□□□□□ -0.92
VAMP3-201ENST00000054666 MRIQ9BWK5 157 aa9.31□□□□□ -0.92
VAMP3-201ENST00000054666 GOLGA6L9A6NEM1 432 aa9.31□□□□□ -0.92
VAMP3-201ENST00000054666 PP2D1A8MPX8 630 aa9.31□□□□□ -0.92
VAMP3-201ENST00000054666 AMPD3Q01432 767 aa9.31□□□□□ -0.92
VAMP3-201ENST00000054666 KCNB1Q14721 858 aa9.31□□□□□ -0.92
VAMP3-201ENST00000054666 NR1I3Q14994 352 aa9.31□□□□□ -0.92
VAMP3-201ENST00000054666 CALCRLQ16602 461 aa9.31□□□□□ -0.92
VAMP3-201ENST00000054666 SUPT20HQ8NEM7 779 aa9.31□□□□□ -0.92
VAMP3-201ENST00000054666 CUL5Q93034 780 aa9.31□□□□□ -0.92
VAMP3-201ENST00000054666 COA7Q96BR5 231 aa9.31□□□□□ -0.92
VAMP3-201ENST00000054666 MED15Q96RN5 788 aa9.31□□□□□ -0.92
VAMP3-201ENST00000054666 MTRQ99707 1265 aa9.31□□□□□ -0.92
VAMP3-201ENST00000054666 BAG1Q99933 345 aaPredicted RBP9.31□□□□□ -0.92
VAMP3-201ENST00000054666 GTPBP4Q9BZE4 634 aaKnown RBP9.31□□□□□ -0.92
VAMP3-201ENST00000054666 ZNF219Q9P2Y4 722 aaPredicted RBP9.31□□□□□ -0.92
VAMP3-201ENST00000054666 PI4KBQ9UBF8 816 aa9.31□□□□□ -0.92
VAMP3-201ENST00000054666 PSMA7O14818 248 aa9.3□□□□□ -0.92
VAMP3-201ENST00000054666 RAD21O60216 631 aa9.3□□□□□ -0.92
VAMP3-201ENST00000054666 STX10O60499 249 aa9.3□□□□□ -0.92
VAMP3-201ENST00000054666 PLCG1P19174 1290 aa9.3□□□□□ -0.92
VAMP3-201ENST00000054666 TNNI2P48788 182 aa9.3□□□□□ -0.92
VAMP3-201ENST00000054666 TCP10Q12799 353 aa9.3□□□□□ -0.92
VAMP3-201ENST00000054666 TBX2Q13207 712 aaPredicted RBP9.3□□□□□ -0.92
VAMP3-201ENST00000054666 PTPN21Q16825 1174 aa9.3□□□□□ -0.92
VAMP3-201ENST00000054666 NAALADL2Q58DX5 795 aa9.3□□□□□ -0.92
VAMP3-201ENST00000054666 DACT2Q5SW24 774 aa9.3□□□□□ -0.92
VAMP3-201ENST00000054666 CC2D2BQ6DHV5 1058 aa9.3□□□□□ -0.92
VAMP3-201ENST00000054666 ADGRF4Q8IZF3 695 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms