RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ZC3H4Q9UPT8 1303 aaKnown RBP12.04□□□□□ -0.48
USP28-201ENST00000003302 PTPROQ16827 1216 aa12.04□□□□□ -0.48
USP28-201ENST00000003302 DISC1Q9NRI5 854 aa12.04□□□□□ -0.48
USP28-201ENST00000003302 LIMA1Q9UHB6 759 aaKnown RBP12.04□□□□□ -0.48
USP28-201ENST00000003302 CAPN6Q9Y6Q1 641 aa12.04□□□□□ -0.48
USP28-201ENST00000003302 FLT1P17948 1338 aa12.04□□□□□ -0.48
USP28-201ENST00000003302 FGRP09769 529 aa12.04□□□□□ -0.48
USP28-201ENST00000003302 DDB1Q16531 1140 aa12.04□□□□□ -0.48
USP28-201ENST00000003302 KCNK18Q7Z418 384 aa12.04□□□□□ -0.48
USP28-201ENST00000003302 ADSSL1Q8N142 457 aa12.04□□□□□ -0.48
USP28-201ENST00000003302 SCN7AQ01118 1682 aa12.04□□□□□ -0.48
USP28-201ENST00000003302 IQUBQ8NA54 791 aa12.04□□□□□ -0.48
USP28-201ENST00000003302 MMTAG2Q9BU76 263 aaKnown RBP12.04□□□□□ -0.48
USP28-201ENST00000003302 EPN1Q9Y6I3 576 aaPredicted RBP12.04□□□□□ -0.48
USP28-201ENST00000003302 KIF5CO60282 957 aa12.03□□□□□ -0.48
USP28-201ENST00000003302 PLCG1P19174 1290 aa12.03□□□□□ -0.48
USP28-201ENST00000003302 STAT6P42226 847 aa12.03□□□□□ -0.48
USP28-201ENST00000003302 ELOA2Q8IYF1 753 aaPredicted RBP12.03□□□□□ -0.48
USP28-201ENST00000003302 PROCA1Q8NCQ7 364 aaPredicted RBP12.03□□□□□ -0.48
USP28-201ENST00000003302 KIAA0895Q8NCT3 520 aa12.03□□□□□ -0.48
USP28-201ENST00000003302 TGFBRAP1Q8WUH2 860 aa12.03□□□□□ -0.48
USP28-201ENST00000003302 MLXIPQ9HAP2 919 aa12.03□□□□□ -0.48
USP28-201ENST00000003302 MKRN1Q9UHC7 482 aaKnown RBP12.03□□□□□ -0.48
USP28-201ENST00000003302 CASP8Q14790 479 aa12.03□□□□□ -0.48
USP28-201ENST00000003302 TTI2Q6NXR4 508 aa12.03□□□□□ -0.48
USP28-201ENST00000003302 FBXO33Q7Z6M2 555 aa12.03□□□□□ -0.48
USP28-201ENST00000003302 COG1Q8WTW3 980 aa12.03□□□□□ -0.48
USP28-201ENST00000003302 RRP36Q96EU6 259 aaKnown RBP12.03□□□□□ -0.48
USP28-201ENST00000003302 SLC39A2Q9NP94 309 aa12.03□□□□□ -0.48
USP28-201ENST00000003302 GNL3LQ9NVN8 582 aaKnown RBP12.03□□□□□ -0.48
USP28-201ENST00000003302 COL16A1Q07092 1604 aaPredicted RBP12.03□□□□□ -0.48
USP28-201ENST00000003302 ZSCAN5CA6NGD5 496 aaPredicted RBP12.03□□□□□ -0.48
USP28-201ENST00000003302 NCK2O43639 380 aa12.03□□□□□ -0.48
USP28-201ENST00000003302 DNA2P51530 1060 aa12.03□□□□□ -0.48
USP28-201ENST00000003302 SLC7A5Q01650 507 aa12.03□□□□□ -0.48
USP28-201ENST00000003302 C2orf54Q08AI8 447 aa12.03□□□□□ -0.48
USP28-201ENST00000003302 LRRC41Q15345 812 aa12.03□□□□□ -0.48
USP28-201ENST00000003302 TTC19Q6DKK2 380 aaPredicted RBP12.03□□□□□ -0.48
USP28-201ENST00000003302 BLIDQ8IZY5 108 aa12.03□□□□□ -0.48
USP28-201ENST00000003302 CTCFLQ8NI51 663 aaPredicted RBP12.03□□□□□ -0.48
USP28-201ENST00000003302 ARGLU1Q9NWB6 273 aaPredicted RBP12.03□□□□□ -0.48
USP28-201ENST00000003302 CTAGE9A4FU28 777 aa12.02□□□□□ -0.48
USP28-201ENST00000003302 FECHP22830 423 aa12.02□□□□□ -0.48
USP28-201ENST00000003302 TECP42680 631 aa12.02□□□□□ -0.48
USP28-201ENST00000003302 LETM2Q2VYF4 491 aa12.02□□□□□ -0.48
USP28-201ENST00000003302 MIIPQ5JXC2 388 aa12.02□□□□□ -0.48
USP28-201ENST00000003302 ZNF658Q5TYW1 1059 aaPredicted RBP12.02□□□□□ -0.48
USP28-201ENST00000003302 TMTC2Q8N394 836 aa12.02□□□□□ -0.48
USP28-201ENST00000003302 HOOK1Q9UJC3 728 aaKnown RBP12.02□□□□□ -0.48
USP28-201ENST00000003302 CEP131Q9UPN4 1083 aa12.02□□□□□ -0.48
USP28-201ENST00000003302 KIAA1551Q9HCM1 1747 aa12.02□□□□□ -0.48
USP28-201ENST00000003302 CCDC151A5D8V7 595 aa12.02□□□□□ -0.48
USP28-201ENST00000003302 TM4SF1P30408 202 aa12.02□□□□□ -0.48
USP28-201ENST00000003302 TRADDQ15628 312 aa12.02□□□□□ -0.48
USP28-201ENST00000003302 ECM1Q16610 540 aa12.02□□□□□ -0.48
USP28-201ENST00000003302 MB21D1Q8N884 522 aa12.02□□□□□ -0.48
USP28-201ENST00000003302 BRIP1Q9BX63 1249 aa12.02□□□□□ -0.48
USP28-201ENST00000003302 TTYH3Q9C0H2 523 aa12.02□□□□□ -0.48
USP28-201ENST00000003302 RWDD2AQ9UIY3 292 aa12.02□□□□□ -0.48
USP28-201ENST00000003302 CCDC178Q5BJE1 867 aa12.02□□□□□ -0.49
USP28-201ENST00000003302 DYMQ7RTS9 669 aa12.02□□□□□ -0.49
USP28-201ENST00000003302 FERMT2Q96AC1 680 aa12.02□□□□□ -0.49
USP28-201ENST00000003302 BSDC1Q9NW68 430 aaPredicted RBP12.02□□□□□ -0.49
USP28-201ENST00000003302 RAB21Q9UL25 225 aa12.02□□□□□ -0.49
USP28-201ENST00000003302 SMCHD1A6NHR9 2005 aa12.02□□□□□ -0.49
USP28-201ENST00000003302 CACNB1Q02641 598 aaPredicted RBP12.02□□□□□ -0.49
USP28-201ENST00000003302 ZSCAN26Q16670 478 aa12.02□□□□□ -0.49
USP28-201ENST00000003302 SLC30A10Q6XR72 485 aa12.02□□□□□ -0.49
USP28-201ENST00000003302 POTEDQ86YR6 584 aa12.02□□□□□ -0.49
USP28-201ENST00000003302 RASSF8Q8NHQ8 419 aa12.02□□□□□ -0.49
USP28-201ENST00000003302 DMGDHQ9UI17 866 aaKnown RBP12.02□□□□□ -0.49
USP28-201ENST00000003302 RTL9Q8NET4 1388 aa12.01□□□□□ -0.49
USP28-201ENST00000003302 POTEMA6NI47 508 aa12.01□□□□□ -0.49
USP28-201ENST00000003302 MYO6Q9UM54 1294 aa12.01□□□□□ -0.49
USP28-201ENST00000003302 GTPBP6O43824 516 aaPredicted RBP12.01□□□□□ -0.49
USP28-201ENST00000003302 SYF2O95926 243 aaKnown RBP12.01□□□□□ -0.49
USP28-201ENST00000003302 MSANTD4Q8NCY6 345 aa12.01□□□□□ -0.49
USP28-201ENST00000003302 NAPGQ99747 312 aaPredicted RBP12.01□□□□□ -0.49
USP28-201ENST00000003302 SEMA6BQ9H3T3 888 aa12.01□□□□□ -0.49
USP28-201ENST00000003302 FAM207AQ9NSI2 230 aaPredicted RBP12.01□□□□□ -0.49
USP28-201ENST00000003302 DACH1Q9UI36 760 aa12.01□□□□□ -0.49
USP28-201ENST00000003302 LAMB2P55268 1798 aa12.01□□□□□ -0.49
USP28-201ENST00000003302 FRMPD2Q68DX3 1309 aaPredicted RBP12.01□□□□□ -0.49
USP28-201ENST00000003302 MATR3P43243 847 aaKnown RBP eCLIP12.01□□□□□ -0.49
USP28-201ENST00000003302 JAKMIP3Q5VZ66 844 aa12.01□□□□□ -0.49
USP28-201ENST00000003302 TRIM47Q96LD4 638 aa12.01□□□□□ -0.49
USP28-201ENST00000003302 TMEM47Q9BQJ4 181 aa12.01□□□□□ -0.49
USP28-201ENST00000003302 STXBP3O00186 592 aa12.01□□□□□ -0.49
USP28-201ENST00000003302 TULP2O00295 520 aa12.01□□□□□ -0.49
USP28-201ENST00000003302 CCP110O43303 1012 aa12.01□□□□□ -0.49
USP28-201ENST00000003302 SLC37A4O43826 429 aa12.01□□□□□ -0.49
USP28-201ENST00000003302 FAM98CQ17RN3 349 aaKnown RBP12.01□□□□□ -0.49
USP28-201ENST00000003302 KANK3Q6NY19 840 aa12.01□□□□□ -0.49
USP28-201ENST00000003302 GOLPH3Q9H4A6 298 aa12.01□□□□□ -0.49
USP28-201ENST00000003302 BIN2Q9UBW5 565 aaPredicted RBP12.01□□□□□ -0.49
USP28-201ENST00000003302 DLEC1Q9Y238 1755 aa12□□□□□ -0.49
USP28-201ENST00000003302 CAVIN4Q5BKX8 364 aa12□□□□□ -0.49
USP28-201ENST00000003302 CCDC122Q5T0U0 273 aa12□□□□□ -0.49
USP28-201ENST00000003302 TRAPPC11Q7Z392 1133 aa12□□□□□ -0.49
USP28-201ENST00000003302 CNGA4Q8IV77 575 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms