RNA–Protein interactions for RNA: YKL139W

CTK1, Transcript of Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I), yeast

Gene CTK1, Length 1,587 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTK1	YKL139W	EFM6	P53970	246 aa		4.18	□□□□□ -1.74
CTK1	YKL139W	DPB4	Q04603	196 aa	Known RBP	4.18	□□□□□ -1.74
CTK1	YKL139W	ERB1	Q04660	807 aa	Known RBP	4.18	□□□□□ -1.74
CTK1	YKL139W	ULA1	Q12059	462 aa		4.18	□□□□□ -1.74
CTK1	YKL139W	MRP13	P12686	339 aa		4.17	□□□□□ -1.74
CTK1	YKL139W	PMS1	P14242	873 aa		4.17	□□□□□ -1.74
CTK1	YKL139W	SYN8	P31377	255 aa		4.17	□□□□□ -1.74
CTK1	YKL139W	PMT1	P33775	817 aa		4.17	□□□□□ -1.74
CTK1	YKL139W	YBR144C	P34215	104 aa		4.17	□□□□□ -1.74
CTK1	YKL139W	MOH1	P38191	138 aa		4.17	□□□□□ -1.74
CTK1	YKL139W	ELO1	P39540	310 aa		4.17	□□□□□ -1.74
CTK1	YKL139W	YJL043W	P47053	257 aa		4.17	□□□□□ -1.74
CTK1	YKL139W	BOP3	P53958	396 aa		4.17	□□□□□ -1.74
CTK1	YKL139W	TMN2	Q04562	672 aa		4.17	□□□□□ -1.74
CTK1	YKL139W	AIM32	Q04689	311 aa		4.17	□□□□□ -1.74
CTK1	YKL139W	YOR389W	Q08912	624 aa		4.17	□□□□□ -1.74
CTK1	YKL139W	AQY1	P0CD91	305 aa		4.16	□□□□□ -1.74
CTK1	YKL139W	IMG1	P25626	169 aa		4.16	□□□□□ -1.74
CTK1	YKL139W	MRE11	P32829	692 aa		4.16	□□□□□ -1.74
CTK1	YKL139W	CMC1	P36064	111 aa		4.16	□□□□□ -1.74
CTK1	YKL139W	HOS2	P53096	452 aa	Predicted RBP	4.16	□□□□□ -1.74
CTK1	YKL139W	TWF1	P53250	332 aa		4.16	□□□□□ -1.74
CTK1	YKL139W	BNI5	P53890	448 aa	Known RBP	4.16	□□□□□ -1.74
CTK1	YKL139W	RQC1	Q05468	723 aa	Known RBP	4.16	□□□□□ -1.74
CTK1	YKL139W	THI3	Q07471	609 aa		4.16	□□□□□ -1.74
CTK1	YKL139W	LEU9	Q12166	604 aa	Known RBP	4.16	□□□□□ -1.74
CTK1	YKL139W	PUP3	P25451	205 aa	Known RBP	4.15	□□□□□ -1.74
CTK1	YKL139W	YCR051W	P25631	222 aa		4.15	□□□□□ -1.74
CTK1	YKL139W	RPC34	P32910	317 aa		4.15	□□□□□ -1.74
CTK1	YKL139W	OAR1	P35731	278 aa		4.15	□□□□□ -1.74
CTK1	YKL139W	OTU2	P38747	307 aa	Known RBP	4.15	□□□□□ -1.74
CTK1	YKL139W	JEM1	P40358	645 aa		4.15	□□□□□ -1.74
CTK1	YKL139W	FAR3	P46671	204 aa		4.15	□□□□□ -1.74
CTK1	YKL139W	SAE2	P46946	345 aa		4.15	□□□□□ -1.74
CTK1	YKL139W	ART5	P53244	586 aa	Known RBP	4.15	□□□□□ -1.74
CTK1	YKL139W	NNF2	P53253	936 aa		4.15	□□□□□ -1.74
CTK1	YKL139W	SLI1	P53304	468 aa		4.15	□□□□□ -1.74
CTK1	YKL139W	RTT109	Q07794	436 aa		4.15	□□□□□ -1.74
CTK1	YKL139W	CHO1	P08456	276 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	MRP2	P10663	115 aa	Predicted RBP	4.14	□□□□□ -1.75
CTK1	YKL139W	APE1	P14904	514 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	SPE2	P21182	396 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	CLB1	P24868	471 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	STE50	P25344	346 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	VPH1	P32563	840 aa	Known RBP	4.14	□□□□□ -1.75
CTK1	YKL139W	ERV46	P39727	415 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	APT1	P49435	187 aa	Known RBP	4.14	□□□□□ -1.75
CTK1	YKL139W	YGR127W	P53275	312 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	RPA49	Q01080	415 aa	Predicted RBP	4.14	□□□□□ -1.75
CTK1	YKL139W	CTF4	Q01454	927 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	CIK1	Q01649	594 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	PFA5	Q03289	374 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	ARX1	Q03862	593 aa	Known RBP	4.14	□□□□□ -1.75
CTK1	YKL139W	TEN1	Q07921	160 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	ISN1	Q99312	450 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	YML133C	Q03099	1374 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	YLL067C	Q07888	1374 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	YLL066C	Q99208	1374 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	BI2	P03873	423 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	ADE5,7	P07244	802 aa	Known RBP	4.14	□□□□□ -1.75
CTK1	YKL139W	NAT1	P12945	854 aa	Known RBP	4.14	□□□□□ -1.75
CTK1	YKL139W	ART10	P18634	518 aa	Known RBP	4.14	□□□□□ -1.75
CTK1	YKL139W	REC107	P21651	314 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	APN1	P22936	367 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	PRD1	P25375	712 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	PAP1	P29468	568 aa	Known RBP	4.14	□□□□□ -1.75
CTK1	YKL139W	APE3	P37302	537 aa	Known RBP	4.14	□□□□□ -1.75
CTK1	YKL139W	ICS2	P38284	255 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	IMD2	P38697	523 aa	Known RBP	4.14	□□□□□ -1.75
CTK1	YKL139W	YEL020C	P39994	560 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	CDC1	P40986	491 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	HXT14	P42833	540 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	ZIM17	P42844	174 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	PTR3	P43606	678 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	SMC3	P47037	1230 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	IMD3	P50095	523 aa	Known RBP	4.14	□□□□□ -1.75
CTK1	YKL139W	OGG1	P53397	376 aa	Predicted RBP	4.14	□□□□□ -1.75
CTK1	YKL139W	YNL058C	P53947	316 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	FIN1	Q03898	291 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	APL4	Q12028	832 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	SEC39	Q12745	709 aa		4.14	□□□□□ -1.75
CTK1	YKL139W	YER145C-A	A0A023PYF4	145 aa		4.13	□□□□□ -1.75
CTK1	YKL139W	RPN13	O13563	156 aa		4.13	□□□□□ -1.75
CTK1	YKL139W	RAP1	P11938	827 aa		4.13	□□□□□ -1.75
CTK1	YKL139W	MAK32	P23060	363 aa		4.13	□□□□□ -1.75
CTK1	YKL139W	MNE1	P24720	663 aa		4.13	□□□□□ -1.75
CTK1	YKL139W	URA7	P28274	579 aa	Known RBP	4.13	□□□□□ -1.75
CTK1	YKL139W	DPH2	P32461	534 aa		4.13	□□□□□ -1.75
CTK1	YKL139W	SEC66	P33754	206 aa		4.13	□□□□□ -1.75
CTK1	YKL139W	YBL055C	P34220	418 aa	Predicted RBP	4.13	□□□□□ -1.75
CTK1	YKL139W	NUP133	P36161	1157 aa		4.13	□□□□□ -1.75
CTK1	YKL139W	FTH1	P38310	465 aa		4.13	□□□□□ -1.75
CTK1	YKL139W	TSC10	P38342	320 aa		4.13	□□□□□ -1.75
CTK1	YKL139W	MRK1	P50873	501 aa		4.13	□□□□□ -1.75
CTK1	YKL139W	ROY1	Q04847	553 aa		4.13	□□□□□ -1.75
CTK1	YKL139W	YLR455W	Q06188	304 aa		4.13	□□□□□ -1.75
CTK1	YKL139W	YLR049C	Q12110	428 aa		4.13	□□□□□ -1.75
CTK1	YKL139W	AFI1	Q99222	893 aa		4.13	□□□□□ -1.75
CTK1	YKL139W	RPL3	P14126	387 aa	Known RBP	4.12	□□□□□ -1.75
CTK1	YKL139W	KRS1	P15180	591 aa	Known RBP	4.12	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 12 ms