RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 TBC1D10CQ8IV04 446 aa22.75■■□□□ 1.23
CLN3-260ENST00000637578 ANKLE1Q8NAG6 615 aa22.75■■□□□ 1.23
CLN3-260ENST00000637578 SLC38A10Q9HBR0 1119 aa22.75■■□□□ 1.23
CLN3-260ENST00000637578 OGDHLQ9ULD0 1010 aa22.75■■□□□ 1.23
CLN3-260ENST00000637578 COL11A1P12107 1806 aaPredicted RBP22.75■■□□□ 1.23
CLN3-260ENST00000637578 PLA2G6O60733 806 aa22.74■■□□□ 1.23
CLN3-260ENST00000637578 MFSD6Q6ZSS7 791 aa22.74■■□□□ 1.23
CLN3-260ENST00000637578 TEX13BQ9BXU2 312 aa22.74■■□□□ 1.23
CLN3-260ENST00000637578 IL25Q9H293 177 aa22.74■■□□□ 1.23
CLN3-260ENST00000637578 CCND3P30281 292 aaPredicted RBP22.73■■□□□ 1.23
CLN3-260ENST00000637578 MNX1P50219 401 aaPredicted RBP22.73■■□□□ 1.23
CLN3-260ENST00000637578 LHX8Q68G74 356 aa22.73■■□□□ 1.23
CLN3-260ENST00000637578 SLC5A4Q9NY91 659 aa22.73■■□□□ 1.23
CLN3-260ENST00000637578 ZNF213O14771 459 aa22.72■■□□□ 1.23
CLN3-260ENST00000637578 FDX1P10109 184 aa22.72■■□□□ 1.23
CLN3-260ENST00000637578 MCCP23508 829 aa22.72■■□□□ 1.23
CLN3-260ENST00000637578 SLC1A4P43007 532 aa22.72■■□□□ 1.23
CLN3-260ENST00000637578 NT5C2P49902 561 aa22.72■■□□□ 1.23
CLN3-260ENST00000637578 OAZ1P54368 228 aa22.72■■□□□ 1.23
CLN3-260ENST00000637578 RCSD1Q6JBY9 416 aa22.72■■□□□ 1.23
CLN3-260ENST00000637578 KIFC2Q96AC6 838 aa22.72■■□□□ 1.23
CLN3-260ENST00000637578 RNF41Q9H4P4 317 aaPredicted RBP22.72■■□□□ 1.23
CLN3-260ENST00000637578 TOMM22Q9NS69 142 aa22.72■■□□□ 1.23
CLN3-260ENST00000637578 TMEM232C9JQI7 657 aa22.72■■□□□ 1.23
CLN3-260ENST00000637578 ZBED4O75132 1171 aa22.72■■□□□ 1.23
CLN3-260ENST00000637578 RRP12Q5JTH9 1297 aaKnown RBP22.72■■□□□ 1.23
CLN3-260ENST00000637578 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.72■■□□□ 1.23
CLN3-260ENST00000637578 CHURC1Q8WUH1 139 aa22.72■■□□□ 1.23
CLN3-260ENST00000637578 TTC14Q96N46 770 aa22.72■■□□□ 1.23
CLN3-260ENST00000637578 RIPK3Q9Y572 518 aa22.72■■□□□ 1.23
CLN3-260ENST00000637578 CYP2C19P33261 490 aa22.71■■□□□ 1.23
CLN3-260ENST00000637578 STAT2P52630 851 aa22.71■■□□□ 1.23
CLN3-260ENST00000637578 SNRNP48Q6IEG0 339 aaKnown RBP22.71■■□□□ 1.23
CLN3-260ENST00000637578 FAM160B2Q86V87 743 aa22.71■■□□□ 1.23
CLN3-260ENST00000637578 TRPV1Q8NER1 839 aa22.71■■□□□ 1.23
CLN3-260ENST00000637578 MAML3Q96JK9 1138 aa22.71■■□□□ 1.23
CLN3-260ENST00000637578 MMP19Q99542 508 aa22.71■■□□□ 1.23
CLN3-260ENST00000637578 TMEM47Q9BQJ4 181 aa22.71■■□□□ 1.23
CLN3-260ENST00000637578 DIS3Q9Y2L1 958 aaKnown RBP22.71■■□□□ 1.23
CLN3-260ENST00000637578 RAD50Q92878 1312 aa22.7■■□□□ 1.22
CLN3-260ENST00000637578 TOP1P11387 765 aaKnown RBP22.7■■□□□ 1.22
CLN3-260ENST00000637578 CYBAP13498 195 aa22.7■■□□□ 1.22
CLN3-260ENST00000637578 CHMLP26374 656 aa22.7■■□□□ 1.22
CLN3-260ENST00000637578 KCTD2Q14681 263 aa22.7■■□□□ 1.22
CLN3-260ENST00000637578 PAWRQ96IZ0 340 aaKnown RBP22.7■■□□□ 1.22
CLN3-260ENST00000637578 HTATIP2Q9BUP3 242 aa22.7■■□□□ 1.22
CLN3-260ENST00000637578 CTNNA3Q9UI47 895 aa22.7■■□□□ 1.22
CLN3-260ENST00000637578 NEDD4P46934 1319 aa22.69■■□□□ 1.22
CLN3-260ENST00000637578 ZNF792Q3KQV3 632 aa22.69■■□□□ 1.22
CLN3-260ENST00000637578 DIS3LQ8TF46 1054 aaKnown RBP22.69■■□□□ 1.22
CLN3-260ENST00000637578 RAVER2Q9HCJ3 691 aaKnown RBP22.69■■□□□ 1.22
CLN3-260ENST00000637578 NECAB2Q7Z6G3 386 aa22.68■■□□□ 1.22
CLN3-260ENST00000637578 CPXCR1Q8N123 301 aa22.68■■□□□ 1.22
CLN3-260ENST00000637578 DCAF4Q8WV16 495 aa22.68■■□□□ 1.22
CLN3-260ENST00000637578 ESR2Q92731 530 aa22.68■■□□□ 1.22
CLN3-260ENST00000637578 PGK2P07205 417 aa22.67■■□□□ 1.22
CLN3-260ENST00000637578 IMMTQ16891 758 aaKnown RBP22.67■■□□□ 1.22
CLN3-260ENST00000637578 KCTD1Q719H9 257 aa22.67■■□□□ 1.22
CLN3-260ENST00000637578 RASGRP2Q7LDG7 609 aa22.67■■□□□ 1.22
CLN3-260ENST00000637578 DDX20Q9UHI6 824 aaKnown RBP22.67■■□□□ 1.22
CLN3-260ENST00000637578 GTF3C3Q9Y5Q9 886 aa22.67■■□□□ 1.22
CLN3-260ENST00000637578 ZNFX1Q9P2E3 1918 aaKnown RBP22.67■■□□□ 1.22
CLN3-260ENST00000637578 ZNF536O15090 1300 aa22.67■■□□□ 1.22
CLN3-260ENST00000637578 DNAJC25-GNG10A0A024R161 153 aa22.67■■□□□ 1.22
CLN3-260ENST00000637578 MSCO60682 206 aa22.67■■□□□ 1.22
CLN3-260ENST00000637578 BTNL9Q6UXG8 535 aa22.67■■□□□ 1.22
CLN3-260ENST00000637578 RUFY2Q8WXA3 655 aa22.67■■□□□ 1.22
CLN3-260ENST00000637578 CTDP1Q9Y5B0 961 aaPredicted RBP22.67■■□□□ 1.22
CLN3-260ENST00000637578 DGKHQ86XP1 1220 aa22.66■■□□□ 1.22
CLN3-260ENST00000637578 CHST13Q8NET6 341 aa22.66■■□□□ 1.22
CLN3-260ENST00000637578 DPF3Q92784 378 aa22.66■■□□□ 1.22
CLN3-260ENST00000637578 NRBP1Q9UHY1 535 aa22.66■■□□□ 1.22
CLN3-260ENST00000637578 PRR12Q9ULL5 1215 aa22.66■■□□□ 1.22
CLN3-260ENST00000637578 LAMA4Q16363 1823 aa22.66■■□□□ 1.22
CLN3-260ENST00000637578 ANKS1AQ92625 1134 aa22.65■■□□□ 1.22
CLN3-260ENST00000637578 CHMP4CQ96CF2 233 aa22.65■■□□□ 1.22
CLN3-260ENST00000637578 FBXO40Q9UH90 709 aa22.65■■□□□ 1.22
CLN3-260ENST00000637578 KDM4AO75164 1064 aa22.64■■□□□ 1.22
CLN3-260ENST00000637578 SNHG28P0DPA3 235 aa22.64■■□□□ 1.22
CLN3-260ENST00000637578 COL6A1P12109 1028 aa22.64■■□□□ 1.22
CLN3-260ENST00000637578 TINF2Q9BSI4 451 aa22.64■■□□□ 1.22
CLN3-260ENST00000637578 H0YGN5 161 aa22.63■■□□□ 1.21
CLN3-260ENST00000637578 SGSM2O43147 1006 aa22.63■■□□□ 1.21
CLN3-260ENST00000637578 SEPT4O43236 478 aa22.63■■□□□ 1.21
CLN3-260ENST00000637578 PDHBP11177 359 aa22.63■■□□□ 1.21
CLN3-260ENST00000637578 IKQ13123 557 aaPredicted RBP22.63■■□□□ 1.21
CLN3-260ENST00000637578 CCDC178Q5BJE1 867 aa22.63■■□□□ 1.21
CLN3-260ENST00000637578 MSL3Q8N5Y2 521 aaKnown RBP22.63■■□□□ 1.21
CLN3-260ENST00000637578 ZSWIM5Q9P217 1185 aa22.63■■□□□ 1.21
CLN3-260ENST00000637578 ISY1Q9ULR0 285 aaKnown RBP22.63■■□□□ 1.21
CLN3-260ENST00000637578 CNGA1P29973 690 aa22.63■■□□□ 1.21
CLN3-260ENST00000637578 PTH1RQ03431 593 aa22.63■■□□□ 1.21
CLN3-260ENST00000637578 PRAMEF19Q5SWL8 479 aa22.63■■□□□ 1.21
CLN3-260ENST00000637578 TTBK2Q6IQ55 1244 aa22.63■■□□□ 1.21
CLN3-260ENST00000637578 AGBL1Q96MI9 1066 aa22.63■■□□□ 1.21
CLN3-260ENST00000637578 KRT23Q9C075 422 aa22.63■■□□□ 1.21
CLN3-260ENST00000637578 C11orf49Q9H6J7 331 aa22.63■■□□□ 1.21
CLN3-260ENST00000637578 B4E1Z4 1266 aa22.62■■□□□ 1.21
CLN3-260ENST00000637578 CCDC96Q2M329 555 aa22.62■■□□□ 1.21
CLN3-260ENST00000637578 TKFCQ3LXA3 575 aa22.62■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms