RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 NYAP2Q9P242 653 aa13.79□□□□□ -0.2
CLN3-257ENST00000637110 DDX20Q9UHI6 824 aaKnown RBP13.79□□□□□ -0.2
CLN3-257ENST00000637110 ATP11BQ9Y2G3 1177 aa13.79□□□□□ -0.2
CLN3-257ENST00000637110 CTDP1Q9Y5B0 961 aaPredicted RBP13.79□□□□□ -0.2
CLN3-257ENST00000637110 RANBP6O60518 1105 aaKnown RBP13.78□□□□□ -0.2
CLN3-257ENST00000637110 MFAP1P55081 439 aaKnown RBP13.78□□□□□ -0.2
CLN3-257ENST00000637110 CCL14Q16627 93 aa13.78□□□□□ -0.2
CLN3-257ENST00000637110 RRP12Q5JTH9 1297 aaKnown RBP13.78□□□□□ -0.2
CLN3-257ENST00000637110 NCAPG2Q86XI2 1143 aa13.78□□□□□ -0.2
CLN3-257ENST00000637110 TICAM2Q86XR7 235 aa13.78□□□□□ -0.2
CLN3-257ENST00000637110 MB21D1Q8N884 522 aa13.78□□□□□ -0.2
CLN3-257ENST00000637110 ATXN2LQ8WWM7 1075 aaKnown RBP13.78□□□□□ -0.2
CLN3-257ENST00000637110 RLFQ13129 1914 aa13.78□□□□□ -0.2
CLN3-257ENST00000637110 F5H6K3 240 aa13.77□□□□□ -0.21
CLN3-257ENST00000637110 HIP1O00291 1037 aa13.77□□□□□ -0.21
CLN3-257ENST00000637110 TTLL1O95922 423 aa13.77□□□□□ -0.21
CLN3-257ENST00000637110 PTPREP23469 700 aa13.77□□□□□ -0.21
CLN3-257ENST00000637110 CNGA1P29973 690 aa13.77□□□□□ -0.21
CLN3-257ENST00000637110 HOXD11P31277 338 aaPredicted RBP13.77□□□□□ -0.21
CLN3-257ENST00000637110 SLC4A3P48751 1232 aa13.77□□□□□ -0.21
CLN3-257ENST00000637110 KLRC3Q07444 240 aa13.77□□□□□ -0.21
CLN3-257ENST00000637110 MAP2K5Q13163 448 aa13.77□□□□□ -0.21
CLN3-257ENST00000637110 MORN1Q5T089 497 aa13.77□□□□□ -0.21
CLN3-257ENST00000637110 CCDC171Q6TFL3 1326 aa13.77□□□□□ -0.21
CLN3-257ENST00000637110 CWC27Q6UX04 472 aaKnown RBP13.77□□□□□ -0.21
CLN3-257ENST00000637110 DPP9Q86TI2 863 aa13.77□□□□□ -0.21
CLN3-257ENST00000637110 LRRC47Q8N1G4 583 aaKnown RBP13.77□□□□□ -0.21
CLN3-257ENST00000637110 IL27Q8NEV9 243 aa13.77□□□□□ -0.21
CLN3-257ENST00000637110 NEDD1Q8NHV4 660 aa13.77□□□□□ -0.21
CLN3-257ENST00000637110 BADQ92934 168 aa13.77□□□□□ -0.21
CLN3-257ENST00000637110 CHMP4CQ96CF2 233 aa13.77□□□□□ -0.21
CLN3-257ENST00000637110 CEP95Q96GE4 821 aa13.77□□□□□ -0.21
CLN3-257ENST00000637110 NUP88Q99567 741 aaPredicted RBP13.77□□□□□ -0.21
CLN3-257ENST00000637110 MOV10L1Q9BXT6 1211 aaKnown RBP13.77□□□□□ -0.21
CLN3-257ENST00000637110 SPATC1LQ9H0A9 340 aa13.77□□□□□ -0.21
CLN3-257ENST00000637110 INCENPQ9NQS7 918 aa13.77□□□□□ -0.21
CLN3-257ENST00000637110 FBXO28Q9NVF7 368 aa13.77□□□□□ -0.21
CLN3-257ENST00000637110 MTMR4Q9NYA4 1195 aa13.77□□□□□ -0.21
CLN3-257ENST00000637110 SLC15A5A6NIM6 579 aa13.76□□□□□ -0.21
CLN3-257ENST00000637110 KBTBD13C9JR72 458 aa13.76□□□□□ -0.21
CLN3-257ENST00000637110 NDUFB10O96000 172 aa13.76□□□□□ -0.21
CLN3-257ENST00000637110 FGAP02671 866 aa13.76□□□□□ -0.21
CLN3-257ENST00000637110 HSPD1P10809 573 aaKnown RBP13.76□□□□□ -0.21
CLN3-257ENST00000637110 ERCC3P19447 782 aa13.76□□□□□ -0.21
CLN3-257ENST00000637110 HAND2P61296 217 aa13.76□□□□□ -0.21
CLN3-257ENST00000637110 PPP4R3BQ5MIZ7 849 aa13.76□□□□□ -0.21
CLN3-257ENST00000637110 ZNF589Q86UQ0 364 aaPredicted RBP13.76□□□□□ -0.21
CLN3-257ENST00000637110 ARRDC4Q8NCT1 418 aa13.76□□□□□ -0.21
CLN3-257ENST00000637110 RNPC3Q96LT9 517 aaKnown RBP13.76□□□□□ -0.21
CLN3-257ENST00000637110 STX8Q9UNK0 236 aa13.76□□□□□ -0.21
CLN3-257ENST00000637110 MTMR7Q9Y216 660 aa13.76□□□□□ -0.21
CLN3-257ENST00000637110 IGKV6D-41A0A0C4DH26 115 aa13.75□□□□□ -0.21
CLN3-257ENST00000637110 FOXP2O15409 715 aa13.75□□□□□ -0.21
CLN3-257ENST00000637110 IKQ13123 557 aaPredicted RBP13.75□□□□□ -0.21
CLN3-257ENST00000637110 ALX1Q15699 326 aa13.75□□□□□ -0.21
CLN3-257ENST00000637110 SLFN13Q68D06 897 aa13.75□□□□□ -0.21
CLN3-257ENST00000637110 SLC39A5Q6ZMH5 540 aa13.75□□□□□ -0.21
CLN3-257ENST00000637110 USP38Q8NB14 1042 aa13.75□□□□□ -0.21
CLN3-257ENST00000637110 KIFC2Q96AC6 838 aa13.75□□□□□ -0.21
CLN3-257ENST00000637110 SLF1Q9BQI6 1058 aa13.75□□□□□ -0.21
CLN3-257ENST00000637110 MROH8Q9H579 483 aa13.75□□□□□ -0.21
CLN3-257ENST00000637110 PPP1R9AQ9ULJ8 1098 aa13.75□□□□□ -0.21
CLN3-257ENST00000637110 VWA5AO00534 786 aa13.74□□□□□ -0.21
CLN3-257ENST00000637110 STRNO43815 780 aa13.74□□□□□ -0.21
CLN3-257ENST00000637110 PDE4AP27815 886 aa13.74□□□□□ -0.21
CLN3-257ENST00000637110 STAT3P40763 770 aa13.74□□□□□ -0.21
CLN3-257ENST00000637110 GRIN2CQ14957 1233 aa13.74□□□□□ -0.21
CLN3-257ENST00000637110 TMEM132BQ14DG7 1078 aa13.74□□□□□ -0.21
CLN3-257ENST00000637110 SHCBP1Q8NEM2 672 aa13.74□□□□□ -0.21
CLN3-257ENST00000637110 ADAMTS19Q8TE59 1207 aa13.74□□□□□ -0.21
CLN3-257ENST00000637110 MKL1Q969V6 931 aa13.74□□□□□ -0.21
CLN3-257ENST00000637110 ASB2Q96Q27 587 aa13.74□□□□□ -0.21
CLN3-257ENST00000637110 UHRF1Q96T88 793 aaPredicted RBP13.74□□□□□ -0.21
CLN3-257ENST00000637110 GAS2L1Q99501 681 aaPredicted RBP13.74□□□□□ -0.21
CLN3-257ENST00000637110 C1QTNF1Q9BXJ1 281 aa13.74□□□□□ -0.21
CLN3-257ENST00000637110 SLC5A4Q9NY91 659 aa13.74□□□□□ -0.21
CLN3-257ENST00000637110 THEGQ9P2T0 379 aa13.74□□□□□ -0.21
CLN3-257ENST00000637110 ANAPC4Q9UJX5 808 aa13.74□□□□□ -0.21
CLN3-257ENST00000637110 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.74□□□□□ -0.21
CLN3-257ENST00000637110 MYH4Q9Y623 1939 aa13.73□□□□□ -0.21
CLN3-257ENST00000637110 ZNF213O14771 459 aa13.73□□□□□ -0.21
CLN3-257ENST00000637110 NMT2O60551 498 aa13.73□□□□□ -0.21
CLN3-257ENST00000637110 ZBED4O75132 1171 aa13.73□□□□□ -0.21
CLN3-257ENST00000637110 SLC25A27O95847 323 aa13.73□□□□□ -0.21
CLN3-257ENST00000637110 FCER1AP12319 257 aa13.73□□□□□ -0.21
CLN3-257ENST00000637110 BMP3P12645 472 aa13.73□□□□□ -0.21
CLN3-257ENST00000637110 DNAJB2P25686 324 aa13.73□□□□□ -0.21
CLN3-257ENST00000637110 ADORA2AP29274 412 aa13.73□□□□□ -0.21
CLN3-257ENST00000637110 MRPS5P82675 430 aaKnown RBP13.73□□□□□ -0.21
CLN3-257ENST00000637110 GRB14Q14449 540 aa13.73□□□□□ -0.21
CLN3-257ENST00000637110 TRIM60Q495X7 471 aa13.73□□□□□ -0.21
CLN3-257ENST00000637110 GJC2Q5T442 439 aaPredicted RBP13.73□□□□□ -0.21
CLN3-257ENST00000637110 TTC22Q5TAA0 569 aa13.73□□□□□ -0.21
CLN3-257ENST00000637110 MFSD6Q6ZSS7 791 aa13.73□□□□□ -0.21
CLN3-257ENST00000637110 CPXCR1Q8N123 301 aa13.73□□□□□ -0.21
CLN3-257ENST00000637110 PRPF38AQ8NAV1 312 aaKnown RBP13.73□□□□□ -0.21
CLN3-257ENST00000637110 GMCL1P1Q8NEA9 526 aa13.73□□□□□ -0.21
CLN3-257ENST00000637110 MMP19Q99542 508 aa13.73□□□□□ -0.21
CLN3-257ENST00000637110 PDLIM7Q9NR12 457 aa13.73□□□□□ -0.21
CLN3-257ENST00000637110 FEM1BQ9UK73 627 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms