RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 CCDC93Q567U6 631 aa3.67□□□□□ -1.82
VIM-210ENST00000637053 C10orf62Q5T681 223 aaPredicted RBP3.67□□□□□ -1.82
VIM-210ENST00000637053 PPP4R4Q6NUP7 873 aa3.67□□□□□ -1.82
VIM-210ENST00000637053 HSCBQ8IWL3 235 aa3.67□□□□□ -1.82
VIM-210ENST00000637053 VPS37AQ8NEZ2 397 aa3.67□□□□□ -1.82
VIM-210ENST00000637053 SNX29Q8TEQ0 813 aa3.67□□□□□ -1.82
VIM-210ENST00000637053 ATXN3LQ9H3M9 355 aa3.67□□□□□ -1.82
VIM-210ENST00000637053 TMX1Q9H3N1 280 aa3.67□□□□□ -1.82
VIM-210ENST00000637053 INTUQ9ULD6 942 aa3.67□□□□□ -1.82
VIM-210ENST00000637053 ASAP1Q9ULH1 1129 aa3.67□□□□□ -1.82
VIM-210ENST00000637053 POLIQ9UNA4 740 aa3.67□□□□□ -1.82
VIM-210ENST00000637053 EPB41L3Q9Y2J2 1087 aaPredicted RBP3.67□□□□□ -1.82
VIM-210ENST00000637053 SLC45A1Q9Y2W3 748 aa3.67□□□□□ -1.82
VIM-210ENST00000637053 TSPAN6O43657 245 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 RNGTTO60942 597 aaKnown RBP3.66□□□□□ -1.82
VIM-210ENST00000637053 MTA2O94776 668 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 IGHDP01880 384 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 MYL1P05976 194 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 RBP3P10745 1247 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 PCSK2P16519 638 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 BMP7P18075 431 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 ATP2B4P23634 1241 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 GDNFP39905 211 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 CASP2P42575 452 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 EIF1AXP47813 144 aaKnown RBP3.66□□□□□ -1.82
VIM-210ENST00000637053 ID3Q02535 119 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 FAM160A1Q05DH4 1040 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 KRTAP1-1Q07627 177 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 PPP2R5AQ15172 486 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 ZKSCAN8Q15776 578 aaPredicted RBP3.66□□□□□ -1.82
VIM-210ENST00000637053 LARP1BQ659C4 914 aaKnown RBP3.66□□□□□ -1.82
VIM-210ENST00000637053 MCF2L2Q86YR7 1114 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 ZSCAN29Q8IWY8 852 aaPredicted RBP3.66□□□□□ -1.82
VIM-210ENST00000637053 MYRIPQ8NFW9 859 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 CLP1Q92989 425 aaKnown RBP3.66□□□□□ -1.82
VIM-210ENST00000637053 CCDC47Q96A33 483 aaKnown RBP3.66□□□□□ -1.82
VIM-210ENST00000637053 ERP27Q96DN0 273 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 TTC14Q96N46 770 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 KCNC2Q96PR1 638 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 ZC3H12CQ9C0D7 883 aaKnown RBP3.66□□□□□ -1.82
VIM-210ENST00000637053 SLKQ9H2G2 1235 aaPredicted RBP3.66□□□□□ -1.82
VIM-210ENST00000637053 EPB41L4BQ9H329 900 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 ZCCHC4Q9H5U6 513 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 CXorf56Q9H5V9 222 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 CARS2Q9HA77 564 aaKnown RBP3.66□□□□□ -1.82
VIM-210ENST00000637053 ZFYVE28Q9HCC9 887 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 HOMER2Q9NSB8 354 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 ZNF69Q9UC07 566 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 POLG2Q9UHN1 485 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 DCTN4Q9UJW0 460 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 PCOLCE2Q9UKZ9 415 aa3.66□□□□□ -1.82
VIM-210ENST00000637053 H3BRB1 525 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 SLC26A4O43511 780 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 P4HBP07237 508 aaKnown RBP3.65□□□□□ -1.83
VIM-210ENST00000637053 FGRP09769 529 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 SYN1P17600 705 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 ZNF76P36508 570 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 CLK1P49759 484 aaKnown RBP3.65□□□□□ -1.83
VIM-210ENST00000637053 MAP2K1Q02750 393 aaPredicted RBP3.65□□□□□ -1.83
VIM-210ENST00000637053 ZNF211Q13398 564 aaPredicted RBP3.65□□□□□ -1.83
VIM-210ENST00000637053 SERINC3Q13530 473 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 ACBD5Q5T8D3 534 aaPredicted RBP3.65□□□□□ -1.83
VIM-210ENST00000637053 PDXDC1Q6P996 788 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 SKAP1Q86WV1 359 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 SUGP1Q8IWZ8 645 aaKnown RBP3.65□□□□□ -1.83
VIM-210ENST00000637053 KIAA1958Q8N8K9 716 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 TTC16Q8NEE8 873 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 GOLGA1Q92805 767 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 KCNN1Q92952 543 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 ISL2Q96A47 359 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 FAM161BQ96MY7 647 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 ZNF700Q9H0M5 742 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 TMPRSS5Q9H3S3 457 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 ZNF576Q9H609 170 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 TUT1Q9H6E5 874 aaKnown RBP3.65□□□□□ -1.83
VIM-210ENST00000637053 C12orf49Q9H741 205 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 PPCSQ9HAB8 311 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 LIN7BQ9HAP6 207 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 CLIC5Q9NZA1 410 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 EGFL7Q9UHF1 273 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 PRDM4Q9UKN5 801 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 ACAD8Q9UKU7 415 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 HDAC9Q9UKV0 1011 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 ODF2LQ9ULJ1 636 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 INPP5FQ9Y2H2 1132 aa3.65□□□□□ -1.83
VIM-210ENST00000637053 MRPS23Q9Y3D9 190 aaKnown RBP3.65□□□□□ -1.83
VIM-210ENST00000637053 RBAK-RBAKDNI3L0D1 243 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 IGF2BP3O00425 579 aaKnown RBP eCLIP3.64□□□□□ -1.83
VIM-210ENST00000637053 ABL1P00519 1130 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 MYL3P08590 195 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 SRGNP10124 158 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 MPSTP25325 297 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 CALD1Q05682 793 aaKnown RBP3.64□□□□□ -1.83
VIM-210ENST00000637053 WASHC5Q12768 1159 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 PDE3BQ13370 1112 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 NFE2Q16621 373 aaPredicted RBP3.64□□□□□ -1.83
VIM-210ENST00000637053 KIF4BQ2VIQ3 1234 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 GRAMD1BQ3KR37 738 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 CCDC70Q6NSX1 233 aa3.64□□□□□ -1.83
VIM-210ENST00000637053 HDGFL2Q7Z4V5 671 aaPredicted RBP3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms