RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 KIAA1524Q8TCG1 905 aa17.81■□□□□ 0.44
CLN3-251ENST00000636853 HSD3B7Q9H2F3 369 aa17.81■□□□□ 0.44
CLN3-251ENST00000636853 IFNKQ9P0W0 207 aa17.81■□□□□ 0.44
CLN3-251ENST00000636853 SEC63Q9UGP8 760 aaKnown RBP17.81■□□□□ 0.44
CLN3-251ENST00000636853 FAM196BA6NMK8 535 aa17.81■□□□□ 0.44
CLN3-251ENST00000636853 C21orf2O43822 256 aa17.81■□□□□ 0.44
CLN3-251ENST00000636853 NT5DC1Q5TFE4 455 aa17.81■□□□□ 0.44
CLN3-251ENST00000636853 GALNT17Q6IS24 598 aa17.81■□□□□ 0.44
CLN3-251ENST00000636853 ZNF646O15015 1829 aaPredicted RBP17.8■□□□□ 0.44
CLN3-251ENST00000636853 SMC2O95347 1197 aa17.8■□□□□ 0.44
CLN3-251ENST00000636853 TTLL1O95922 423 aa17.8■□□□□ 0.44
CLN3-251ENST00000636853 SLFN14P0C7P3 912 aa17.8■□□□□ 0.44
CLN3-251ENST00000636853 ATP1A3P13637 1013 aa17.8■□□□□ 0.44
CLN3-251ENST00000636853 CASP1P29466 404 aa17.8■□□□□ 0.44
CLN3-251ENST00000636853 FKBP1AP62942 108 aaKnown RBP17.8■□□□□ 0.44
CLN3-251ENST00000636853 ATP2B2Q01814 1243 aa17.8■□□□□ 0.44
CLN3-251ENST00000636853 MYL5Q02045 173 aa17.8■□□□□ 0.44
CLN3-251ENST00000636853 ARID5BQ14865 1188 aa17.8■□□□□ 0.44
CLN3-251ENST00000636853 FILIP1Q7Z7B0 1213 aa17.8■□□□□ 0.44
CLN3-251ENST00000636853 CACTINQ8WUQ7 758 aaKnown RBP17.8■□□□□ 0.44
CLN3-251ENST00000636853 XPO4Q9C0E2 1151 aaKnown RBP17.8■□□□□ 0.44
CLN3-251ENST00000636853 ZMYND12Q9H0C1 365 aa17.8■□□□□ 0.44
CLN3-251ENST00000636853 GPCPD1Q9NPB8 672 aa17.8■□□□□ 0.44
CLN3-251ENST00000636853 SMCO2A6NFE2 343 aa17.79■□□□□ 0.44
CLN3-251ENST00000636853 DDTLA6NHG4 134 aaPredicted RBP17.79■□□□□ 0.44
CLN3-251ENST00000636853 SMARCA1P28370 1054 aa17.79■□□□□ 0.44
CLN3-251ENST00000636853 PAGE5Q96GU1 130 aa17.79■□□□□ 0.44
CLN3-251ENST00000636853 RIOX1Q9H6W3 641 aa17.79■□□□□ 0.44
CLN3-251ENST00000636853 DNAJC18Q9H819 358 aa17.79■□□□□ 0.44
CLN3-251ENST00000636853 FAM198AQ9UFP1 575 aa17.79■□□□□ 0.44
CLN3-251ENST00000636853 MORC3Q14149 939 aa17.79■□□□□ 0.44
CLN3-251ENST00000636853 MRIQ9BWK5 157 aa17.79■□□□□ 0.44
CLN3-251ENST00000636853 R3HCC1Q9Y3T6 440 aaKnown RBP17.79■□□□□ 0.44
CLN3-251ENST00000636853 MYO3BQ8WXR4 1341 aa17.79■□□□□ 0.44
CLN3-251ENST00000636853 PPIP5K2O43314 1243 aa17.78■□□□□ 0.44
CLN3-251ENST00000636853 CDC25AP30304 524 aa17.78■□□□□ 0.44
CLN3-251ENST00000636853 SHROOM1Q2M3G4 852 aaPredicted RBP17.78■□□□□ 0.44
CLN3-251ENST00000636853 ASPRV1Q53RT3 343 aa17.78■□□□□ 0.44
CLN3-251ENST00000636853 ZSCAN29Q8IWY8 852 aaPredicted RBP17.78■□□□□ 0.44
CLN3-251ENST00000636853 CCDC12Q8WUD4 166 aaPredicted RBP17.78■□□□□ 0.44
CLN3-251ENST00000636853 STAMQ92783 540 aa17.78■□□□□ 0.44
CLN3-251ENST00000636853 TMEM60Q9H2L4 133 aa17.78■□□□□ 0.44
CLN3-251ENST00000636853 YDJCA8MPS7 323 aa17.78■□□□□ 0.44
CLN3-251ENST00000636853 SNHG28P0DPA3 235 aa17.78■□□□□ 0.44
CLN3-251ENST00000636853 HDLBPQ00341 1268 aaKnown RBP17.78■□□□□ 0.44
CLN3-251ENST00000636853 FANCCQ00597 558 aa17.78■□□□□ 0.44
CLN3-251ENST00000636853 ARL6IP4Q66PJ3 421 aaKnown RBP17.78■□□□□ 0.44
CLN3-251ENST00000636853 SH3BP5LQ7L8J4 393 aa17.78■□□□□ 0.44
CLN3-251ENST00000636853 SH3RF1Q7Z6J0 888 aa17.78■□□□□ 0.44
CLN3-251ENST00000636853 SPATA20Q8TB22 786 aa17.78■□□□□ 0.44
CLN3-251ENST00000636853 C6orf50Q9HD87 102 aa17.78■□□□□ 0.44
CLN3-251ENST00000636853 SPTLC3Q9NUV7 552 aa17.78■□□□□ 0.44
CLN3-251ENST00000636853 SIPA1L1O43166 1804 aa17.77■□□□□ 0.44
CLN3-251ENST00000636853 DNTTIP2Q5QJE6 756 aaKnown RBP17.77■□□□□ 0.44
CLN3-251ENST00000636853 SOGA3Q5TF21 947 aa17.77■□□□□ 0.44
CLN3-251ENST00000636853 DEFB132Q7Z7B7 95 aa17.77■□□□□ 0.44
CLN3-251ENST00000636853 EHD4Q9H223 541 aa17.77■□□□□ 0.44
CLN3-251ENST00000636853 FANCLQ9NW38 375 aa17.77■□□□□ 0.44
CLN3-251ENST00000636853 MYH4Q9Y623 1939 aa17.77■□□□□ 0.44
CLN3-251ENST00000636853 DYNC1I1O14576 645 aa17.77■□□□□ 0.43
CLN3-251ENST00000636853 FMR1Q06787 632 aaKnown RBP eCLIP17.77■□□□□ 0.43
CLN3-251ENST00000636853 TTBK2Q6IQ55 1244 aa17.77■□□□□ 0.43
CLN3-251ENST00000636853 COA7Q96BR5 231 aa17.77■□□□□ 0.43
CLN3-251ENST00000636853 CCDC34Q96HJ3 373 aa17.77■□□□□ 0.43
CLN3-251ENST00000636853 IDI2Q9BXS1 227 aa17.77■□□□□ 0.43
CLN3-251ENST00000636853 TDRD3Q9H7E2 651 aaKnown RBP17.77■□□□□ 0.43
CLN3-251ENST00000636853 SERPINA10Q9UK55 444 aa17.77■□□□□ 0.43
CLN3-251ENST00000636853 GNA11P29992 359 aa17.76■□□□□ 0.43
CLN3-251ENST00000636853 ZNF543Q08ER8 600 aa17.76■□□□□ 0.43
CLN3-251ENST00000636853 E2F4Q16254 413 aa17.76■□□□□ 0.43
CLN3-251ENST00000636853 LRRC8AQ8IWT6 810 aa17.76■□□□□ 0.43
CLN3-251ENST00000636853 FAM177A1Q8N128 213 aaPredicted RBP17.76■□□□□ 0.43
CLN3-251ENST00000636853 TRIML1Q8N9V2 468 aa17.76■□□□□ 0.43
CLN3-251ENST00000636853 MLKLQ8NB16 471 aa17.76■□□□□ 0.43
CLN3-251ENST00000636853 DHX36Q9H2U1 1008 aaKnown RBP17.76■□□□□ 0.43
CLN3-251ENST00000636853 LONP1P36776 959 aaKnown RBP17.75■□□□□ 0.43
CLN3-251ENST00000636853 HSP90AA4PQ58FG1 418 aa17.75■□□□□ 0.43
CLN3-251ENST00000636853 CC2D2BQ6DHV5 1058 aa17.75■□□□□ 0.43
CLN3-251ENST00000636853 DTHD1Q6ZMT9 781 aa17.75■□□□□ 0.43
CLN3-251ENST00000636853 KRT25Q7Z3Z0 450 aa17.75■□□□□ 0.43
CLN3-251ENST00000636853 TRMT44Q8IYL2 757 aaKnown RBP17.75■□□□□ 0.43
CLN3-251ENST00000636853 IQUBQ8NA54 791 aa17.75■□□□□ 0.43
CLN3-251ENST00000636853 PI4KBQ9UBF8 816 aa17.75■□□□□ 0.43
CLN3-251ENST00000636853 BIN2Q9UBW5 565 aaPredicted RBP17.75■□□□□ 0.43
CLN3-251ENST00000636853 GREB1LQ9C091 1923 aaPredicted RBP17.75■□□□□ 0.43
CLN3-251ENST00000636853 SLC16A2P36021 539 aa17.75■□□□□ 0.43
CLN3-251ENST00000636853 DPYDQ12882 1025 aa17.75■□□□□ 0.43
CLN3-251ENST00000636853 LETM2Q2VYF4 491 aa17.75■□□□□ 0.43
CLN3-251ENST00000636853 JAKMIP3Q5VZ66 844 aa17.75■□□□□ 0.43
CLN3-251ENST00000636853 KCTD1Q719H9 257 aa17.75■□□□□ 0.43
CLN3-251ENST00000636853 SUPT20HQ8NEM7 779 aa17.75■□□□□ 0.43
CLN3-251ENST00000636853 DPF2Q92785 391 aa17.75■□□□□ 0.43
CLN3-251ENST00000636853 CCDC17Q96LX7 622 aa17.75■□□□□ 0.43
CLN3-251ENST00000636853 TMEM260Q9NX78 707 aa17.75■□□□□ 0.43
CLN3-251ENST00000636853 PP2D1A8MPX8 630 aa17.74■□□□□ 0.43
CLN3-251ENST00000636853 SERPINC1P01008 464 aa17.74■□□□□ 0.43
CLN3-251ENST00000636853 NONOQ15233 471 aaKnown RBP eCLIP17.74■□□□□ 0.43
CLN3-251ENST00000636853 CCDC96Q2M329 555 aa17.74■□□□□ 0.43
CLN3-251ENST00000636853 CFAP100Q494V2 611 aa17.74■□□□□ 0.43
CLN3-251ENST00000636853 CERKLQ49MI3 558 aaPredicted RBP17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms