RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 SEC63Q9UGP8 760 aaKnown RBP23.16■■□□□ 1.3
CLN3-250ENST00000636839 FOXP1Q9H334 677 aaPredicted RBP23.15■■□□□ 1.3
CLN3-250ENST00000636839 VCPKMTQ9H867 229 aa23.15■■□□□ 1.3
CLN3-250ENST00000636839 DDX49Q9Y6V7 483 aaKnown RBP23.15■■□□□ 1.3
CLN3-250ENST00000636839 KRT2P35908 639 aa23.15■■□□□ 1.3
CLN3-250ENST00000636839 TOB1P50616 345 aaPredicted RBP23.15■■□□□ 1.3
CLN3-250ENST00000636839 MOB2Q70IA6 237 aa23.15■■□□□ 1.3
CLN3-250ENST00000636839 SCYL3Q8IZE3 742 aa23.15■■□□□ 1.3
CLN3-250ENST00000636839 RASGRP4Q8TDF6 673 aa23.15■■□□□ 1.3
CLN3-250ENST00000636839 FEZ1Q99689 392 aa23.15■■□□□ 1.3
CLN3-250ENST00000636839 GZF1Q9H116 711 aaPredicted RBP23.15■■□□□ 1.3
CLN3-250ENST00000636839 GOPCQ9HD26 462 aa23.15■■□□□ 1.3
CLN3-250ENST00000636839 PTPRAP18433 802 aa23.14■■□□□ 1.29
CLN3-250ENST00000636839 IKQ13123 557 aaPredicted RBP23.14■■□□□ 1.29
CLN3-250ENST00000636839 TNFRSF25Q93038 417 aa23.14■■□□□ 1.29
CLN3-250ENST00000636839 HOOK2Q96ED9 719 aa23.14■■□□□ 1.29
CLN3-250ENST00000636839 IQCA1LA6NCM1 817 aa23.13■■□□□ 1.29
CLN3-250ENST00000636839 TAL1P17542 331 aaPredicted RBP23.13■■□□□ 1.29
CLN3-250ENST00000636839 FMR1Q06787 632 aaKnown RBP eCLIP23.13■■□□□ 1.29
CLN3-250ENST00000636839 MTMR8Q96EF0 704 aa23.13■■□□□ 1.29
CLN3-250ENST00000636839 ZNF396Q96N95 335 aaPredicted RBP23.13■■□□□ 1.29
CLN3-250ENST00000636839 ATP2B1P20020 1258 aa23.13■■□□□ 1.29
CLN3-250ENST00000636839 NAPAP54920 295 aa23.13■■□□□ 1.29
CLN3-250ENST00000636839 SPP2Q13103 211 aa23.13■■□□□ 1.29
CLN3-250ENST00000636839 SAMD1Q6SPF0 538 aaPredicted RBP23.13■■□□□ 1.29
CLN3-250ENST00000636839 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.13■■□□□ 1.29
CLN3-250ENST00000636839 ZC3H15Q8WU90 426 aaKnown RBP23.13■■□□□ 1.29
CLN3-250ENST00000636839 CDCA5Q96FF9 252 aa23.13■■□□□ 1.29
CLN3-250ENST00000636839 SCAND2PQ9GZW5 306 aaPredicted RBP23.13■■□□□ 1.29
CLN3-250ENST00000636839 RRAGCQ9HB90 399 aa23.13■■□□□ 1.29
CLN3-250ENST00000636839 SH3GLB2Q9NR46 395 aa23.13■■□□□ 1.29
CLN3-250ENST00000636839 FBXO28Q9NVF7 368 aa23.13■■□□□ 1.29
CLN3-250ENST00000636839 CFAP45Q9UL16 551 aa23.13■■□□□ 1.29
CLN3-250ENST00000636839 SYNPO2Q9UMS6 1093 aa23.13■■□□□ 1.29
CLN3-250ENST00000636839 MYH15Q9Y2K3 1946 aa23.12■■□□□ 1.29
CLN3-250ENST00000636839 PNMA6FA0A0J9YX94 578 aa23.12■■□□□ 1.29
CLN3-250ENST00000636839 MTMR2Q13614 643 aa23.12■■□□□ 1.29
CLN3-250ENST00000636839 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.12■■□□□ 1.29
CLN3-250ENST00000636839 PGBD1Q96JS3 809 aa23.12■■□□□ 1.29
CLN3-250ENST00000636839 CLEC11AQ9Y240 323 aa23.12■■□□□ 1.29
CLN3-250ENST00000636839 ZHX2Q9Y6X8 837 aa23.12■■□□□ 1.29
CLN3-250ENST00000636839 WNT7AO00755 349 aa23.11■■□□□ 1.29
CLN3-250ENST00000636839 QRICH1Q2TAL8 776 aa23.11■■□□□ 1.29
CLN3-250ENST00000636839 MAP1SQ66K74 1059 aaPredicted RBP23.11■■□□□ 1.29
CLN3-250ENST00000636839 PICK1Q9NRD5 415 aa23.11■■□□□ 1.29
CLN3-250ENST00000636839 RTEL1Q9NZ71 1219 aa23.11■■□□□ 1.29
CLN3-250ENST00000636839 RCOR1Q9UKL0 485 aa23.11■■□□□ 1.29
CLN3-250ENST00000636839 ZBTB5O15062 677 aa23.11■■□□□ 1.29
CLN3-250ENST00000636839 SYDE2Q5VT97 1194 aa23.11■■□□□ 1.29
CLN3-250ENST00000636839 BLIDQ8IZY5 108 aa23.11■■□□□ 1.29
CLN3-250ENST00000636839 PCDHA4Q9UN74 947 aa23.11■■□□□ 1.29
CLN3-250ENST00000636839 SMCO2A6NFE2 343 aa23.1■■□□□ 1.29
CLN3-250ENST00000636839 TRIM75PA6NK02 468 aa23.1■■□□□ 1.29
CLN3-250ENST00000636839 CDC37Q16543 378 aaPredicted RBP23.1■■□□□ 1.29
CLN3-250ENST00000636839 ANO1Q5XXA6 986 aa23.1■■□□□ 1.29
CLN3-250ENST00000636839 CNKSR2Q8WXI2 1034 aa23.1■■□□□ 1.29
CLN3-250ENST00000636839 SH2D4AQ9H788 454 aa23.1■■□□□ 1.29
CLN3-250ENST00000636839 EMILIN3Q9NT22 766 aa23.1■■□□□ 1.29
CLN3-250ENST00000636839 PRR12Q9ULL5 1215 aa23.1■■□□□ 1.29
CLN3-250ENST00000636839 SCN4AP35499 1836 aa23.1■■□□□ 1.29
CLN3-250ENST00000636839 VGLL4Q14135 290 aa23.09■■□□□ 1.29
CLN3-250ENST00000636839 SF3A1Q15459 793 aaKnown RBP23.09■■□□□ 1.29
CLN3-250ENST00000636839 BTNL9Q6UXG8 535 aa23.09■■□□□ 1.29
CLN3-250ENST00000636839 PIK3AP1Q6ZUJ8 805 aa23.09■■□□□ 1.29
CLN3-250ENST00000636839 LINC00301Q8NCQ3 95 aa23.09■■□□□ 1.29
CLN3-250ENST00000636839 KIAA1683Q9H0B3 1180 aa23.09■■□□□ 1.29
CLN3-250ENST00000636839 M0R2N6 131 aa23.09■■□□□ 1.29
CLN3-250ENST00000636839 TRAF5O00463 557 aa23.09■■□□□ 1.29
CLN3-250ENST00000636839 KLHL40Q2TBA0 621 aa23.09■■□□□ 1.29
CLN3-250ENST00000636839 PNMA8AQ86V59 439 aaPredicted RBP23.09■■□□□ 1.29
CLN3-250ENST00000636839 ZNF526Q8TF50 670 aaPredicted RBP23.09■■□□□ 1.29
CLN3-250ENST00000636839 ZMYND12Q9H0C1 365 aa23.09■■□□□ 1.29
CLN3-250ENST00000636839 PCDHB6Q9Y5E3 794 aa23.09■■□□□ 1.29
CLN3-250ENST00000636839 WDR90Q96KV7 1748 aa23.09■■□□□ 1.29
CLN3-250ENST00000636839 ELP1O95163 1332 aa23.08■■□□□ 1.29
CLN3-250ENST00000636839 PTMSP20962 102 aa23.08■■□□□ 1.29
CLN3-250ENST00000636839 STAT2P52630 851 aa23.08■■□□□ 1.29
CLN3-250ENST00000636839 UBE2HP62256 183 aa23.08■■□□□ 1.29
CLN3-250ENST00000636839 KIFC2Q96AC6 838 aa23.08■■□□□ 1.29
CLN3-250ENST00000636839 BRMS1Q9HCU9 246 aa23.08■■□□□ 1.29
CLN3-250ENST00000636839 GINM1Q9NU53 330 aa23.08■■□□□ 1.29
CLN3-250ENST00000636839 POLR3EQ9NVU0 708 aa23.08■■□□□ 1.29
CLN3-250ENST00000636839 PCDHA6Q9UN73 950 aa23.08■■□□□ 1.29
CLN3-250ENST00000636839 PCDHA8Q9Y5H6 950 aa23.08■■□□□ 1.29
CLN3-250ENST00000636839 SNCAIPQ9Y6H5 919 aa23.08■■□□□ 1.29
CLN3-250ENST00000636839 DOCK1Q14185 1865 aa23.08■■□□□ 1.29
CLN3-250ENST00000636839 CALML3P27482 149 aa23.08■■□□□ 1.28
CLN3-250ENST00000636839 NASPP49321 788 aaPredicted RBP23.08■■□□□ 1.28
CLN3-250ENST00000636839 MAP3K9P80192 1104 aa23.08■■□□□ 1.28
CLN3-250ENST00000636839 ATL3Q6DD88 541 aa23.08■■□□□ 1.28
CLN3-250ENST00000636839 ZNF280CQ8ND82 737 aa23.08■■□□□ 1.28
CLN3-250ENST00000636839 CCDC148Q8NFR7 591 aa23.08■■□□□ 1.28
CLN3-250ENST00000636839 MARCKSP29966 332 aaPredicted RBP23.07■■□□□ 1.28
CLN3-250ENST00000636839 SKOR2Q2VWA4 1001 aaPredicted RBP23.07■■□□□ 1.28
CLN3-250ENST00000636839 CLMNQ96JQ2 1002 aa23.07■■□□□ 1.28
CLN3-250ENST00000636839 WDR18Q9BV38 432 aa23.07■■□□□ 1.28
CLN3-250ENST00000636839 TMEM260Q9NX78 707 aa23.07■■□□□ 1.28
CLN3-250ENST00000636839 MRVI1Q9Y6F6 885 aa23.07■■□□□ 1.28
CLN3-250ENST00000636839 PPP1R12BO60237 982 aaPredicted RBP23.06■■□□□ 1.28
CLN3-250ENST00000636839 STK38Q15208 465 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms