RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 RASA3Q14644 834 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 CFAP58Q5T655 872 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 USPL1Q5W0Q7 1092 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 KDM7AQ6ZMT4 941 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 CPLX3Q8WVH0 158 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 FTOQ9C0B1 505 aaKnown RBP eCLIP7.6□□□□□ -1.19
SCN1A-213ENST00000636759 SOS2Q07890 1332 aaPredicted RBP7.6□□□□□ -1.19
SCN1A-213ENST00000636759 EIF4E1BA6NMX2 242 aaKnown RBP7.6□□□□□ -1.19
SCN1A-213ENST00000636759 DNM1LO00429 736 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 JAK2O60674 1132 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 EPB41P11171 864 aaKnown RBP7.6□□□□□ -1.19
SCN1A-213ENST00000636759 PCK1P35558 622 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 TMEM132AQ24JP5 1023 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 Q4G0T1 1027 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 PPP1R15BQ5SWA1 713 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 TRIM68Q6AZZ1 485 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 DDX17Q92841 729 aaKnown RBP7.6□□□□□ -1.19
SCN1A-213ENST00000636759 POLD4Q9HCU8 107 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 C2CD2Q9Y426 696 aa7.6□□□□□ -1.19
SCN1A-213ENST00000636759 NEDD4P46934 1319 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 N4BP3O15049 544 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 DNAJC8O75937 253 aaPredicted RBP7.59□□□□□ -1.19
SCN1A-213ENST00000636759 UBTFL1P0CB47 393 aaPredicted RBP7.59□□□□□ -1.19
SCN1A-213ENST00000636759 ALDH3A1P30838 453 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 MDH1P40925 334 aaKnown RBP7.59□□□□□ -1.19
SCN1A-213ENST00000636759 GJA8P48165 433 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 NDUFA8P51970 172 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 MPP3Q13368 585 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 GKAP1Q5VSY0 366 aaPredicted RBP7.59□□□□□ -1.19
SCN1A-213ENST00000636759 ADALQ6DHV7 355 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 MPRIPQ6WCQ1 1025 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 GBP7Q8N8V2 638 aaPredicted RBP7.59□□□□□ -1.19
SCN1A-213ENST00000636759 MAIP1Q8WWC4 291 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 ZNF570Q96NI8 536 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 MTRQ99707 1265 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 SAR1BQ9Y6B6 198 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 DOCK2Q92608 1830 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 WNK3Q9BYP7 1800 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 CASZ1Q86V15 1759 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 EVI5O60447 810 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 PARP1P09874 1014 aaKnown RBP7.59□□□□□ -1.19
SCN1A-213ENST00000636759 ADD1P35611 737 aaKnown RBP7.59□□□□□ -1.19
SCN1A-213ENST00000636759 MRPS35P82673 323 aaKnown RBP7.59□□□□□ -1.19
SCN1A-213ENST00000636759 APBA1Q02410 837 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 INF2Q27J81 1249 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 C6orf89Q6UWU4 347 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 BRINP3Q76B58 766 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 DDX46Q7L014 1031 aaKnown RBP7.59□□□□□ -1.19
SCN1A-213ENST00000636759 CPLX4Q7Z7G2 160 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 NBPF15Q8N660 670 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 PANX2Q96RD6 677 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 OSBPL7Q9BZF2 842 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 CHD4Q14839 1912 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 PLCH1Q4KWH8 1693 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 A0A1W2PQ27 194 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 A0A1W2PQ64 194 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 A0A1W2PQD8 194 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 PRAMEF22A3QJZ6 481 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 A6NHS1 94 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 CEP104O60308 925 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 PFDN1O60925 122 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.59□□□□□ -1.19
SCN1A-213ENST00000636759 CCDC155Q8N6L0 562 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 NECTIN2Q92692 538 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 VCXQ9H320 206 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 PCDHA7Q9UN72 937 aa7.59□□□□□ -1.19
SCN1A-213ENST00000636759 GMNCA6NCL1 334 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 PHKG2P15735 406 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 HPDP32754 393 aaPredicted RBP7.58□□□□□ -1.2
SCN1A-213ENST00000636759 MAGEA10P43363 369 aaPredicted RBP7.58□□□□□ -1.2
SCN1A-213ENST00000636759 EPHB4P54760 987 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 TTMPQ5BVD1 217 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 NUGGCQ68CJ6 796 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 ANKS4BQ8N8V4 417 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 C8orf76Q96K31 380 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 UNC45AQ9H3U1 944 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 TLR7Q9NYK1 1049 aaKnown RBP7.58□□□□□ -1.2
SCN1A-213ENST00000636759 GUCA1BQ9UMX6 200 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 ZNF609O15014 1411 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 A0A1B0GVG6 124 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 PI4KAP2A4QPH2 592 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 SRRM3A6NNA2 597 aaPredicted RBP7.58□□□□□ -1.2
SCN1A-213ENST00000636759 CCND1P24385 295 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 RFX5P48382 616 aaPredicted RBP7.58□□□□□ -1.2
SCN1A-213ENST00000636759 TBX2Q13207 712 aaPredicted RBP7.58□□□□□ -1.2
SCN1A-213ENST00000636759 PRPF4BQ13523 1007 aaKnown RBP7.58□□□□□ -1.2
SCN1A-213ENST00000636759 RIPK1Q13546 671 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 CCDC92Q53HC0 331 aaPredicted RBP7.58□□□□□ -1.2
SCN1A-213ENST00000636759 CREB3L3Q68CJ9 461 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 EMBQ6PCB8 327 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 RAD9BQ6WBX8 426 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 TBC1D1Q86TI0 1168 aaPredicted RBP7.58□□□□□ -1.2
SCN1A-213ENST00000636759 PI4KAP1Q8N8J0 262 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 WDR66Q8TBY9 1149 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 ZNHIT6Q9NWK9 470 aaKnown RBP7.58□□□□□ -1.2
SCN1A-213ENST00000636759 CEP131Q9UPN4 1083 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 RBM8AQ9Y5S9 174 aaKnown RBP7.58□□□□□ -1.2
SCN1A-213ENST00000636759 COL5A2P05997 1499 aaPredicted RBP7.58□□□□□ -1.2
SCN1A-213ENST00000636759 A0A1B0GUL6 1792 aa7.58□□□□□ -1.2
SCN1A-213ENST00000636759 DPPA5A6NC42 116 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms