RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 SNX17Q15036 470 aa19.27■□□□□ 0.68
CLN3-246ENST00000636228 SHHQ15465 462 aa19.27■□□□□ 0.68
CLN3-246ENST00000636228 C9orf50Q5SZB4 431 aa19.27■□□□□ 0.68
CLN3-246ENST00000636228 PI4K2BQ8TCG2 481 aa19.27■□□□□ 0.68
CLN3-246ENST00000636228 MTMR4Q9NYA4 1195 aa19.27■□□□□ 0.68
CLN3-246ENST00000636228 NRBP1Q9UHY1 535 aa19.27■□□□□ 0.68
CLN3-246ENST00000636228 DLL1O00548 723 aa19.26■□□□□ 0.67
CLN3-246ENST00000636228 SNAI1O95863 264 aaPredicted RBP19.26■□□□□ 0.67
CLN3-246ENST00000636228 COPB2P35606 906 aa19.26■□□□□ 0.67
CLN3-246ENST00000636228 MKL1Q969V6 931 aa19.26■□□□□ 0.67
CLN3-246ENST00000636228 FSD1Q9BTV5 496 aa19.26■□□□□ 0.67
CLN3-246ENST00000636228 PHF24Q9UPV7 400 aa19.26■□□□□ 0.67
CLN3-246ENST00000636228 CNPY2Q9Y2B0 182 aa19.26■□□□□ 0.67
CLN3-246ENST00000636228 STXBP5LQ9Y2K9 1186 aa19.26■□□□□ 0.67
CLN3-246ENST00000636228 CTDP1Q9Y5B0 961 aaPredicted RBP19.26■□□□□ 0.67
CLN3-246ENST00000636228 POTEB2H3BUK9 544 aa19.25■□□□□ 0.67
CLN3-246ENST00000636228 AKR1A1P14550 325 aa19.25■□□□□ 0.67
CLN3-246ENST00000636228 ITGB8P26012 769 aa19.25■□□□□ 0.67
CLN3-246ENST00000636228 IRX5P78411 483 aaPredicted RBP19.25■□□□□ 0.67
CLN3-246ENST00000636228 RNF180Q86T96 592 aa19.25■□□□□ 0.67
CLN3-246ENST00000636228 INCENPQ9NQS7 918 aa19.25■□□□□ 0.67
CLN3-246ENST00000636228 ZHX1Q9UKY1 873 aaPredicted RBP19.25■□□□□ 0.67
CLN3-246ENST00000636228 ISY1Q9ULR0 285 aaKnown RBP19.25■□□□□ 0.67
CLN3-246ENST00000636228 MYH8P13535 1937 aa19.25■□□□□ 0.67
CLN3-246ENST00000636228 COL6A3P12111 3177 aa19.25■□□□□ 0.67
CLN3-246ENST00000636228 TTC41PQ6P2S7 1318 aa19.25■□□□□ 0.67
CLN3-246ENST00000636228 A0A1W2PQ45 241 aaPredicted RBP19.24■□□□□ 0.67
CLN3-246ENST00000636228 A0A1W2PQY0 241 aa19.24■□□□□ 0.67
CLN3-246ENST00000636228 TTLL1O95922 423 aa19.24■□□□□ 0.67
CLN3-246ENST00000636228 TSPY3P0CV98 308 aa19.24■□□□□ 0.67
CLN3-246ENST00000636228 TSPY8P0CW00 308 aa19.24■□□□□ 0.67
CLN3-246ENST00000636228 TFAP4Q01664 338 aa19.24■□□□□ 0.67
CLN3-246ENST00000636228 SLFN13Q68D06 897 aa19.24■□□□□ 0.67
CLN3-246ENST00000636228 CCDC129Q6ZRS4 1044 aa19.24■□□□□ 0.67
CLN3-246ENST00000636228 NEDD1Q8NHV4 660 aa19.24■□□□□ 0.67
CLN3-246ENST00000636228 NACAP1Q9BZK3 213 aa19.24■□□□□ 0.67
CLN3-246ENST00000636228 SLC38A10Q9HBR0 1119 aa19.24■□□□□ 0.67
CLN3-246ENST00000636228 ZNF287Q9HBT7 754 aa19.24■□□□□ 0.67
CLN3-246ENST00000636228 FEM1BQ9UK73 627 aa19.24■□□□□ 0.67
CLN3-246ENST00000636228 PARP14Q460N5 1801 aa19.23■□□□□ 0.67
CLN3-246ENST00000636228 DNAJC25-GNG10A0A024R161 153 aa19.23■□□□□ 0.67
CLN3-246ENST00000636228 ERC2O15083 957 aa19.23■□□□□ 0.67
CLN3-246ENST00000636228 PQBP1O60828 265 aaKnown RBP19.23■□□□□ 0.67
CLN3-246ENST00000636228 ADAMTS4O75173 837 aa19.23■□□□□ 0.67
CLN3-246ENST00000636228 LRRFIP1Q32MZ4 808 aaKnown RBP19.23■□□□□ 0.67
CLN3-246ENST00000636228 ZMYM1Q5SVZ6 1142 aa19.23■□□□□ 0.67
CLN3-246ENST00000636228 C1orf53Q5VUE5 145 aa19.23■□□□□ 0.67
CLN3-246ENST00000636228 ANKRD35Q8N283 1001 aa19.23■□□□□ 0.67
CLN3-246ENST00000636228 GUCD1Q96NT3 240 aa19.23■□□□□ 0.67
CLN3-246ENST00000636228 NAPBQ9H115 298 aa19.23■□□□□ 0.67
CLN3-246ENST00000636228 HOMER2Q9NSB8 354 aa19.23■□□□□ 0.67
CLN3-246ENST00000636228 FAM184BQ9ULE4 1060 aa19.23■□□□□ 0.67
CLN3-246ENST00000636228 MYH7P12883 1935 aa19.23■□□□□ 0.67
CLN3-246ENST00000636228 COL11A1P12107 1806 aaPredicted RBP19.23■□□□□ 0.67
CLN3-246ENST00000636228 MYADML2A6NDP7 307 aa19.22■□□□□ 0.67
CLN3-246ENST00000636228 TMEM232C9JQI7 657 aa19.22■□□□□ 0.67
CLN3-246ENST00000636228 ATP2A1O14983 1001 aa19.22■□□□□ 0.67
CLN3-246ENST00000636228 BMP3P12645 472 aa19.22■□□□□ 0.67
CLN3-246ENST00000636228 CTDSPL2Q05D32 466 aa19.22■□□□□ 0.67
CLN3-246ENST00000636228 PDE4BQ07343 736 aa19.22■□□□□ 0.67
CLN3-246ENST00000636228 PPARAQ07869 468 aa19.22■□□□□ 0.67
CLN3-246ENST00000636228 GMCL1P1Q8NEA9 526 aa19.22■□□□□ 0.67
CLN3-246ENST00000636228 SYNRGQ9UMZ2 1314 aa19.22■□□□□ 0.67
CLN3-246ENST00000636228 GREB1LQ9C091 1923 aaPredicted RBP19.21■□□□□ 0.67
CLN3-246ENST00000636228 CLTBP09497 229 aa19.21■□□□□ 0.67
CLN3-246ENST00000636228 MX1P20591 662 aa19.21■□□□□ 0.67
CLN3-246ENST00000636228 ACLYP53396 1101 aa19.21■□□□□ 0.67
CLN3-246ENST00000636228 EPHB4P54760 987 aa19.21■□□□□ 0.67
CLN3-246ENST00000636228 SNAP25P60880 206 aa19.21■□□□□ 0.67
CLN3-246ENST00000636228 ACVR2BQ13705 512 aa19.21■□□□□ 0.67
CLN3-246ENST00000636228 KCNA10Q16322 511 aa19.21■□□□□ 0.67
CLN3-246ENST00000636228 MAMDC4Q6UXC1 1216 aa19.21■□□□□ 0.67
CLN3-246ENST00000636228 FGD4Q96M96 766 aa19.21■□□□□ 0.67
CLN3-246ENST00000636228 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.21■□□□□ 0.67
CLN3-246ENST00000636228 TACC3Q9Y6A5 838 aa19.21■□□□□ 0.67
CLN3-246ENST00000636228 SYNGAP1Q96PV0 1343 aa19.21■□□□□ 0.67
CLN3-246ENST00000636228 FOXP2O15409 715 aa19.2■□□□□ 0.66
CLN3-246ENST00000636228 ADCY6O43306 1168 aa19.2■□□□□ 0.66
CLN3-246ENST00000636228 MCCP23508 829 aa19.2■□□□□ 0.66
CLN3-246ENST00000636228 CNTN2Q02246 1040 aa19.2■□□□□ 0.66
CLN3-246ENST00000636228 IKQ13123 557 aaPredicted RBP19.2■□□□□ 0.66
CLN3-246ENST00000636228 FAM109BQ6ICB4 259 aaPredicted RBP19.2■□□□□ 0.66
CLN3-246ENST00000636228 MSL3Q8N5Y2 521 aaKnown RBP19.2■□□□□ 0.66
CLN3-246ENST00000636228 KLHDC9Q8NEP7 349 aa19.2■□□□□ 0.66
CLN3-246ENST00000636228 AGBL1Q96MI9 1066 aa19.2■□□□□ 0.66
CLN3-246ENST00000636228 NMT2O60551 498 aa19.19■□□□□ 0.66
CLN3-246ENST00000636228 SLC3A2P08195 630 aaKnown RBP19.19■□□□□ 0.66
CLN3-246ENST00000636228 ANKRD45Q5TZF3 282 aa19.19■□□□□ 0.66
CLN3-246ENST00000636228 VPS53Q5VIR6 699 aa19.19■□□□□ 0.66
CLN3-246ENST00000636228 CCSAPQ6IQ19 270 aaPredicted RBP19.19■□□□□ 0.66
CLN3-246ENST00000636228 RASGRP2Q7LDG7 609 aa19.19■□□□□ 0.66
CLN3-246ENST00000636228 CHST13Q8NET6 341 aa19.19■□□□□ 0.66
CLN3-246ENST00000636228 STARD7Q9NQZ5 370 aa19.19■□□□□ 0.66
CLN3-246ENST00000636228 TMEM39AQ9NV64 488 aa19.19■□□□□ 0.66
CLN3-246ENST00000636228 MTMR7Q9Y216 660 aa19.19■□□□□ 0.66
CLN3-246ENST00000636228 C6orf222P0C671 652 aaPredicted RBP19.18■□□□□ 0.66
CLN3-246ENST00000636228 RAG1P15918 1043 aa19.18■□□□□ 0.66
CLN3-246ENST00000636228 SLC1A4P43007 532 aa19.18■□□□□ 0.66
CLN3-246ENST00000636228 FAAP100Q0VG06 881 aa19.18■□□□□ 0.66
CLN3-246ENST00000636228 CCDC144BQ3MJ40 725 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms