RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 FEM1BQ9UK73 627 aa23.85■■□□□ 1.41
CLN3-245ENST00000636172 ZBTB48P10074 688 aaPredicted RBP23.84■■□□□ 1.41
CLN3-245ENST00000636172 DDIT3P35638 169 aa23.84■■□□□ 1.41
CLN3-245ENST00000636172 IKQ13123 557 aaPredicted RBP23.84■■□□□ 1.41
CLN3-245ENST00000636172 SYDE2Q5VT97 1194 aa23.84■■□□□ 1.41
CLN3-245ENST00000636172 RASAL3Q86YV0 1011 aa23.84■■□□□ 1.41
CLN3-245ENST00000636172 PROCA1Q8NCQ7 364 aaPredicted RBP23.84■■□□□ 1.41
CLN3-245ENST00000636172 TANGO6Q9C0B7 1094 aa23.84■■□□□ 1.41
CLN3-245ENST00000636172 JMJD4Q9H9V9 463 aa23.84■■□□□ 1.41
CLN3-245ENST00000636172 VAT1LQ9HCJ6 419 aa23.84■■□□□ 1.41
CLN3-245ENST00000636172 RLFQ13129 1914 aa23.84■■□□□ 1.41
CLN3-245ENST00000636172 ZNF157P51786 506 aaPredicted RBP23.84■■□□□ 1.41
CLN3-245ENST00000636172 AKAP17AQ02040 695 aaKnown RBP23.84■■□□□ 1.41
CLN3-245ENST00000636172 MKRN3Q13064 507 aaKnown RBP23.84■■□□□ 1.41
CLN3-245ENST00000636172 PKN1Q16512 942 aa23.84■■□□□ 1.41
CLN3-245ENST00000636172 TREML2Q5T2D2 321 aa23.84■■□□□ 1.41
CLN3-245ENST00000636172 RGMBQ6NW40 437 aa23.84■■□□□ 1.41
CLN3-245ENST00000636172 GADL1Q6ZQY3 521 aa23.84■■□□□ 1.41
CLN3-245ENST00000636172 FAM160B2Q86V87 743 aa23.84■■□□□ 1.41
CLN3-245ENST00000636172 FAM184AQ8NB25 1140 aa23.84■■□□□ 1.41
CLN3-245ENST00000636172 CHURC1Q8WUH1 139 aa23.84■■□□□ 1.41
CLN3-245ENST00000636172 ABT1Q9ULW3 272 aaKnown RBP23.84■■□□□ 1.41
CLN3-245ENST00000636172 DEXIO95424 95 aa23.83■■□□□ 1.41
CLN3-245ENST00000636172 MTMR8Q96EF0 704 aa23.83■■□□□ 1.41
CLN3-245ENST00000636172 MS4A4AQ96JQ5 239 aa23.83■■□□□ 1.41
CLN3-245ENST00000636172 AIFM3Q96NN9 605 aa23.83■■□□□ 1.41
CLN3-245ENST00000636172 PIGSQ96S52 555 aa23.83■■□□□ 1.41
CLN3-245ENST00000636172 RBM27Q9P2N5 1060 aaKnown RBP23.83■■□□□ 1.41
CLN3-245ENST00000636172 PRR12Q9ULL5 1215 aa23.83■■□□□ 1.41
CLN3-245ENST00000636172 HOMER1Q86YM7 354 aa23.82■■□□□ 1.4
CLN3-245ENST00000636172 RRP36Q96EU6 259 aaKnown RBP23.82■■□□□ 1.4
CLN3-245ENST00000636172 SLF1Q9BQI6 1058 aa23.82■■□□□ 1.4
CLN3-245ENST00000636172 FLOT1O75955 427 aa23.81■■□□□ 1.4
CLN3-245ENST00000636172 GTF2A2P52657 109 aa23.81■■□□□ 1.4
CLN3-245ENST00000636172 PFKFB3Q16875 520 aaPredicted RBP23.81■■□□□ 1.4
CLN3-245ENST00000636172 CATSPERGQ6ZRH7 1159 aa23.81■■□□□ 1.4
CLN3-245ENST00000636172 FASTKD5Q7L8L6 764 aaKnown RBP23.81■■□□□ 1.4
CLN3-245ENST00000636172 KIFC2Q96AC6 838 aa23.81■■□□□ 1.4
CLN3-245ENST00000636172 ALG1Q9BT22 464 aa23.81■■□□□ 1.4
CLN3-245ENST00000636172 KIF3AQ9Y496 699 aa23.81■■□□□ 1.4
CLN3-245ENST00000636172 USP17L15C9J2P7 530 aa23.8■■□□□ 1.4
CLN3-245ENST00000636172 USP17L13C9JLJ4 530 aa23.8■■□□□ 1.4
CLN3-245ENST00000636172 USP17L11C9JVI0 530 aa23.8■■□□□ 1.4
CLN3-245ENST00000636172 USP17L18D6R9N7 530 aa23.8■■□□□ 1.4
CLN3-245ENST00000636172 USP17L22D6RA61 530 aa23.8■■□□□ 1.4
CLN3-245ENST00000636172 USP17L17D6RBQ6 530 aa23.8■■□□□ 1.4
CLN3-245ENST00000636172 USP17L19D6RCP7 530 aa23.8■■□□□ 1.4
CLN3-245ENST00000636172 USP17L20D6RJB6 530 aa23.8■■□□□ 1.4
CLN3-245ENST00000636172 SLC10A3P09131 477 aa23.8■■□□□ 1.4
CLN3-245ENST00000636172 APLP1P51693 650 aa23.8■■□□□ 1.4
CLN3-245ENST00000636172 USP17L24Q0WX57 530 aa23.8■■□□□ 1.4
CLN3-245ENST00000636172 WASF1Q92558 559 aa23.8■■□□□ 1.4
CLN3-245ENST00000636172 HHIPL1Q96JK4 782 aa23.8■■□□□ 1.4
CLN3-245ENST00000636172 AGTPBP1Q9UPW5 1226 aa23.8■■□□□ 1.4
CLN3-245ENST00000636172 CETPP11597 493 aa23.79■■□□□ 1.4
CLN3-245ENST00000636172 SCG2P13521 617 aa23.79■■□□□ 1.4
CLN3-245ENST00000636172 CDC37Q16543 378 aaPredicted RBP23.79■■□□□ 1.4
CLN3-245ENST00000636172 GPAT2Q6NUI2 795 aa23.79■■□□□ 1.4
CLN3-245ENST00000636172 PRPF38AQ8NAV1 312 aaKnown RBP23.79■■□□□ 1.4
CLN3-245ENST00000636172 SEC63Q9UGP8 760 aaKnown RBP23.79■■□□□ 1.4
CLN3-245ENST00000636172 PPP1R9AQ9ULJ8 1098 aa23.79■■□□□ 1.4
CLN3-245ENST00000636172 PNMA6FA0A0J9YX94 578 aa23.79■■□□□ 1.4
CLN3-245ENST00000636172 ZBTB5O15062 677 aa23.79■■□□□ 1.4
CLN3-245ENST00000636172 PDCP20941 246 aa23.79■■□□□ 1.4
CLN3-245ENST00000636172 SYT1P21579 422 aa23.79■■□□□ 1.4
CLN3-245ENST00000636172 FOSBP53539 338 aa23.79■■□□□ 1.4
CLN3-245ENST00000636172 SNAP25P60880 206 aa23.79■■□□□ 1.4
CLN3-245ENST00000636172 LARP1BQ659C4 914 aaKnown RBP23.79■■□□□ 1.4
CLN3-245ENST00000636172 SAMD1Q6SPF0 538 aaPredicted RBP23.79■■□□□ 1.4
CLN3-245ENST00000636172 CCL15-CCL14A0A0B4J2E2 113 aa23.78■■□□□ 1.4
CLN3-245ENST00000636172 PPP1R11O60927 126 aaPredicted RBP23.78■■□□□ 1.4
CLN3-245ENST00000636172 HOXA7P31268 230 aaPredicted RBP23.78■■□□□ 1.4
CLN3-245ENST00000636172 CCL15Q16663 113 aa23.78■■□□□ 1.4
CLN3-245ENST00000636172 QRICH1Q2TAL8 776 aa23.78■■□□□ 1.4
CLN3-245ENST00000636172 BRI3BPQ8WY22 251 aa23.78■■□□□ 1.4
CLN3-245ENST00000636172 SHISA4Q96DD7 197 aa23.78■■□□□ 1.4
CLN3-245ENST00000636172 RANBP17Q9H2T7 1088 aaKnown RBP23.78■■□□□ 1.4
CLN3-245ENST00000636172 CREBZFQ9NS37 354 aa23.78■■□□□ 1.4
CLN3-245ENST00000636172 GJB4Q9NTQ9 266 aa23.78■■□□□ 1.4
CLN3-245ENST00000636172 FAM155AB1AL88 458 aaPredicted RBP23.77■■□□□ 1.4
CLN3-245ENST00000636172 PKP1Q13835 747 aa23.77■■□□□ 1.4
CLN3-245ENST00000636172 COG2Q14746 738 aa23.77■■□□□ 1.4
CLN3-245ENST00000636172 WWC2Q6AWC2 1192 aa23.77■■□□□ 1.4
CLN3-245ENST00000636172 DNAJC5GQ8N7S2 189 aa23.77■■□□□ 1.4
CLN3-245ENST00000636172 GPKOWQ92917 476 aaPredicted RBP eCLIP23.77■■□□□ 1.4
CLN3-245ENST00000636172 C8orf76Q96K31 380 aa23.77■■□□□ 1.4
CLN3-245ENST00000636172 HEATR3Q7Z4Q2 680 aa23.76■■□□□ 1.39
CLN3-245ENST00000636172 CCDC102AQ96A19 550 aa23.76■■□□□ 1.39
CLN3-245ENST00000636172 ATG4CQ96DT6 458 aa23.76■■□□□ 1.39
CLN3-245ENST00000636172 VPS54Q9P1Q0 977 aa23.76■■□□□ 1.39
CLN3-245ENST00000636172 MYPNQ86TC9 1320 aa23.76■■□□□ 1.39
CLN3-245ENST00000636172 STX6O43752 255 aa23.75■■□□□ 1.39
CLN3-245ENST00000636172 DSG3P32926 999 aa23.75■■□□□ 1.39
CLN3-245ENST00000636172 OTUD7BQ6GQQ9 843 aa23.75■■□□□ 1.39
CLN3-245ENST00000636172 BARHL2Q9NY43 387 aa23.75■■□□□ 1.39
CLN3-245ENST00000636172 CIZ1Q9ULV3 898 aaPredicted RBP23.75■■□□□ 1.39
CLN3-245ENST00000636172 ADAMTS5Q9UNA0 930 aa23.75■■□□□ 1.39
CLN3-245ENST00000636172 COL11A1P12107 1806 aaPredicted RBP23.75■■□□□ 1.39
CLN3-245ENST00000636172 A0A0G2JMZ2 1700 aa23.75■■□□□ 1.39
CLN3-245ENST00000636172 SPDYE16A6NNV3 312 aaPredicted RBP23.74■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms