RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 REPS2Q8NFH8 660 aa18.78■□□□□ 0.6
PDLIM3-213ENST00000629667 TEX13BQ9BXU2 312 aa18.78■□□□□ 0.6
PDLIM3-213ENST00000629667 SYNRGQ9UMZ2 1314 aa18.77■□□□□ 0.6
PDLIM3-213ENST00000629667 CHGBP05060 677 aa18.77■□□□□ 0.6
PDLIM3-213ENST00000629667 MS4A1P11836 297 aa18.77■□□□□ 0.6
PDLIM3-213ENST00000629667 DNAJB2P25686 324 aa18.77■□□□□ 0.6
PDLIM3-213ENST00000629667 SNRNP48Q6IEG0 339 aaKnown RBP18.77■□□□□ 0.6
PDLIM3-213ENST00000629667 CTR9Q6PD62 1173 aa18.77■□□□□ 0.6
PDLIM3-213ENST00000629667 HAUS7Q99871 368 aa18.77■□□□□ 0.6
PDLIM3-213ENST00000629667 SLF1Q9BQI6 1058 aa18.77■□□□□ 0.6
PDLIM3-213ENST00000629667 ZHX1Q9UKY1 873 aaPredicted RBP18.77■□□□□ 0.6
PDLIM3-213ENST00000629667 ZBED9Q6R2W3 1325 aa18.76■□□□□ 0.59
PDLIM3-213ENST00000629667 SYNGAP1Q96PV0 1343 aa18.76■□□□□ 0.59
PDLIM3-213ENST00000629667 GREB1LQ9C091 1923 aaPredicted RBP18.76■□□□□ 0.59
PDLIM3-213ENST00000629667 TIMP1P01033 207 aa18.76■□□□□ 0.59
PDLIM3-213ENST00000629667 SLC4A3P48751 1232 aa18.76■□□□□ 0.59
PDLIM3-213ENST00000629667 GRIN2CQ14957 1233 aa18.76■□□□□ 0.59
PDLIM3-213ENST00000629667 KCNA10Q16322 511 aa18.76■□□□□ 0.59
PDLIM3-213ENST00000629667 ZSCAN25Q6NSZ9 544 aa18.76■□□□□ 0.59
PDLIM3-213ENST00000629667 KLHDC9Q8NEP7 349 aa18.76■□□□□ 0.59
PDLIM3-213ENST00000629667 GLT1D1Q96MS3 346 aa18.76■□□□□ 0.59
PDLIM3-213ENST00000629667 NUP88Q99567 741 aaPredicted RBP18.76■□□□□ 0.59
PDLIM3-213ENST00000629667 PRDM6Q9NQX0 595 aa18.76■□□□□ 0.59
PDLIM3-213ENST00000629667 ARPP21Q9UBL0 812 aaPredicted RBP18.76■□□□□ 0.59
PDLIM3-213ENST00000629667 MYH4Q9Y623 1939 aa18.76■□□□□ 0.59
PDLIM3-213ENST00000629667 MROH7Q68CQ1 1323 aa18.75■□□□□ 0.59
PDLIM3-213ENST00000629667 MCM3APO60318 1980 aa18.75■□□□□ 0.59
PDLIM3-213ENST00000629667 DUSP11O75319 330 aaKnown RBP18.75■□□□□ 0.59
PDLIM3-213ENST00000629667 SNAI1O95863 264 aaPredicted RBP18.75■□□□□ 0.59
PDLIM3-213ENST00000629667 MAMDC4Q6UXC1 1216 aa18.75■□□□□ 0.59
PDLIM3-213ENST00000629667 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.75■□□□□ 0.59
PDLIM3-213ENST00000629667 ZNF576Q9H609 170 aa18.75■□□□□ 0.59
PDLIM3-213ENST00000629667 RIPK3Q9Y572 518 aa18.75■□□□□ 0.59
PDLIM3-213ENST00000629667 CTDP1Q9Y5B0 961 aaPredicted RBP18.75■□□□□ 0.59
PDLIM3-213ENST00000629667 F5H6K3 240 aa18.74■□□□□ 0.59
PDLIM3-213ENST00000629667 C6orf222P0C671 652 aaPredicted RBP18.74■□□□□ 0.59
PDLIM3-213ENST00000629667 KLRC3Q07444 240 aa18.74■□□□□ 0.59
PDLIM3-213ENST00000629667 MFSD5Q6N075 450 aa18.74■□□□□ 0.59
PDLIM3-213ENST00000629667 CCDC174Q6PII3 467 aa18.74■□□□□ 0.59
PDLIM3-213ENST00000629667 SIRT2Q8IXJ6 389 aa18.74■□□□□ 0.59
PDLIM3-213ENST00000629667 CPXCR1Q8N123 301 aa18.74■□□□□ 0.59
PDLIM3-213ENST00000629667 STK11IPQ8N1F8 1099 aa18.74■□□□□ 0.59
PDLIM3-213ENST00000629667 PRPF38AQ8NAV1 312 aaKnown RBP18.74■□□□□ 0.59
PDLIM3-213ENST00000629667 PCSK9Q8NBP7 692 aaKnown RBP18.74■□□□□ 0.59
PDLIM3-213ENST00000629667 VTI1AQ96AJ9 217 aa18.74■□□□□ 0.59
PDLIM3-213ENST00000629667 TIFAQ96CG3 184 aa18.74■□□□□ 0.59
PDLIM3-213ENST00000629667 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.74■□□□□ 0.59
PDLIM3-213ENST00000629667 PUS7LQ9H0K6 701 aaKnown RBP18.74■□□□□ 0.59
PDLIM3-213ENST00000629667 MKNK2Q9HBH9 465 aa18.74■□□□□ 0.59
PDLIM3-213ENST00000629667 SPC25Q9HBM1 224 aa18.74■□□□□ 0.59
PDLIM3-213ENST00000629667 ELP1O95163 1332 aa18.74■□□□□ 0.59
PDLIM3-213ENST00000629667 DNAJC25-GNG10A0A024R161 153 aa18.73■□□□□ 0.59
PDLIM3-213ENST00000629667 MYADML2A6NDP7 307 aa18.73■□□□□ 0.59
PDLIM3-213ENST00000629667 ZBED4O75132 1171 aa18.73■□□□□ 0.59
PDLIM3-213ENST00000629667 PPIGQ13427 754 aaKnown RBP eCLIP18.73■□□□□ 0.59
PDLIM3-213ENST00000629667 ACVR2BQ13705 512 aa18.73■□□□□ 0.59
PDLIM3-213ENST00000629667 CCSAPQ6IQ19 270 aaPredicted RBP18.73■□□□□ 0.59
PDLIM3-213ENST00000629667 ZNF467Q7Z7K2 595 aaPredicted RBP18.73■□□□□ 0.59
PDLIM3-213ENST00000629667 NYAP2Q9P242 653 aa18.73■□□□□ 0.59
PDLIM3-213ENST00000629667 TBX21Q9UL17 535 aa18.73■□□□□ 0.59
PDLIM3-213ENST00000629667 DDX19BQ9UMR2 479 aa18.73■□□□□ 0.59
PDLIM3-213ENST00000629667 NDUFB10O96000 172 aa18.72■□□□□ 0.59
PDLIM3-213ENST00000629667 ASGR1P07306 291 aa18.72■□□□□ 0.59
PDLIM3-213ENST00000629667 CST5P28325 142 aaPredicted RBP18.72■□□□□ 0.59
PDLIM3-213ENST00000629667 TJAP1Q5JTD0 557 aa18.72■□□□□ 0.59
PDLIM3-213ENST00000629667 CCDC129Q6ZRS4 1044 aa18.72■□□□□ 0.59
PDLIM3-213ENST00000629667 ANKRD35Q8N283 1001 aa18.72■□□□□ 0.59
PDLIM3-213ENST00000629667 USP38Q8NB14 1042 aa18.72■□□□□ 0.59
PDLIM3-213ENST00000629667 ABHD16BQ9H3Z7 469 aa18.72■□□□□ 0.59
PDLIM3-213ENST00000629667 ZBTB40Q9NUA8 1239 aa18.72■□□□□ 0.59
PDLIM3-213ENST00000629667 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.72■□□□□ 0.59
PDLIM3-213ENST00000629667 MINDY4BA8MYZ0 360 aa18.71■□□□□ 0.59
PDLIM3-213ENST00000629667 ATP2A1O14983 1001 aa18.71■□□□□ 0.59
PDLIM3-213ENST00000629667 RASA1P20936 1047 aa18.71■□□□□ 0.59
PDLIM3-213ENST00000629667 SBK1Q52WX2 424 aa18.71■□□□□ 0.59
PDLIM3-213ENST00000629667 TMEM199Q8N511 208 aa18.71■□□□□ 0.59
PDLIM3-213ENST00000629667 KIFC2Q96AC6 838 aa18.71■□□□□ 0.59
PDLIM3-213ENST00000629667 RAVER2Q9HCJ3 691 aaKnown RBP18.71■□□□□ 0.59
PDLIM3-213ENST00000629667 CLIP2Q9UDT6 1046 aa18.71■□□□□ 0.59
PDLIM3-213ENST00000629667 COG6Q9Y2V7 657 aa18.71■□□□□ 0.59
PDLIM3-213ENST00000629667 A0A0U1RQG5 324 aaPredicted RBP18.7■□□□□ 0.58
PDLIM3-213ENST00000629667 CDK7P50613 346 aa18.7■□□□□ 0.58
PDLIM3-213ENST00000629667 IRX5P78411 483 aaPredicted RBP18.7■□□□□ 0.58
PDLIM3-213ENST00000629667 CCDC144BQ3MJ40 725 aa18.7■□□□□ 0.58
PDLIM3-213ENST00000629667 GNASQ5JWF2 1037 aa18.7■□□□□ 0.58
PDLIM3-213ENST00000629667 TMEM240Q5SV17 173 aa18.7■□□□□ 0.58
PDLIM3-213ENST00000629667 STRBPQ96SI9 672 aaKnown RBP18.7■□□□□ 0.58
PDLIM3-213ENST00000629667 GAS2L1Q99501 681 aaPredicted RBP18.7■□□□□ 0.58
PDLIM3-213ENST00000629667 FBXO40Q9UH90 709 aa18.7■□□□□ 0.58
PDLIM3-213ENST00000629667 ARVCFO00192 962 aa18.69■□□□□ 0.58
PDLIM3-213ENST00000629667 TLR3O15455 904 aaKnown RBP18.69■□□□□ 0.58
PDLIM3-213ENST00000629667 ADCY6O43306 1168 aa18.69■□□□□ 0.58
PDLIM3-213ENST00000629667 CSF2RAP15509 400 aa18.69■□□□□ 0.58
PDLIM3-213ENST00000629667 GJA9P57773 515 aa18.69■□□□□ 0.58
PDLIM3-213ENST00000629667 GIMAP6Q6P9H5 292 aa18.69■□□□□ 0.58
PDLIM3-213ENST00000629667 C16orf59Q7L2K0 433 aa18.69■□□□□ 0.58
PDLIM3-213ENST00000629667 CHST13Q8NET6 341 aa18.69■□□□□ 0.58
PDLIM3-213ENST00000629667 PBX4Q9BYU1 374 aa18.69■□□□□ 0.58
PDLIM3-213ENST00000629667 PPP1R12CQ9BZL4 782 aa18.69■□□□□ 0.58
PDLIM3-213ENST00000629667 UPF3AQ9H1J1 476 aaKnown RBP18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms