RNA–Protein interactions for RNA: ENST00000625286.1

DDX41-218, Transcript of DEAD-box helicase 41, humanhuman

TSL 5 BASIC

Gene DDX41, Length 150 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-218ENST00000625286 RAD21O60216 631 aa13.27□□□□□ -0.29
DDX41-218ENST00000625286 CLTBP09497 229 aa13.27□□□□□ -0.29
DDX41-218ENST00000625286 SMAD3P84022 425 aaKnown RBP13.27□□□□□ -0.29
DDX41-218ENST00000625286 KLRC3Q07444 240 aa13.27□□□□□ -0.29
DDX41-218ENST00000625286 SBK1Q52WX2 424 aa13.27□□□□□ -0.29
DDX41-218ENST00000625286 KLHDC9Q8NEP7 349 aa13.27□□□□□ -0.29
DDX41-218ENST00000625286 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.27□□□□□ -0.29
DDX41-218ENST00000625286 EPB41L4AQ9HCS5 686 aaPredicted RBP13.27□□□□□ -0.29
DDX41-218ENST00000625286 GOPCQ9HD26 462 aa13.27□□□□□ -0.29
DDX41-218ENST00000625286 TACC3Q9Y6A5 838 aa13.27□□□□□ -0.29
DDX41-218ENST00000625286 PQBP1O60828 265 aaKnown RBP13.26□□□□□ -0.29
DDX41-218ENST00000625286 NDUFB10O96000 172 aa13.26□□□□□ -0.29
DDX41-218ENST00000625286 ACLYP53396 1101 aa13.26□□□□□ -0.29
DDX41-218ENST00000625286 MYO9BQ13459 2157 aa13.26□□□□□ -0.29
DDX41-218ENST00000625286 TSHZ3Q63HK5 1081 aa13.26□□□□□ -0.29
DDX41-218ENST00000625286 C16orf59Q7L2K0 433 aa13.26□□□□□ -0.29
DDX41-218ENST00000625286 RNF180Q86T96 592 aa13.26□□□□□ -0.29
DDX41-218ENST00000625286 ROBO3Q96MS0 1386 aa13.26□□□□□ -0.29
DDX41-218ENST00000625286 SLF1Q9BQI6 1058 aa13.26□□□□□ -0.29
DDX41-218ENST00000625286 NYAP2Q9P242 653 aa13.26□□□□□ -0.29
DDX41-218ENST00000625286 SYNRGQ9UMZ2 1314 aa13.26□□□□□ -0.29
DDX41-218ENST00000625286 MYH4Q9Y623 1939 aa13.25□□□□□ -0.29
DDX41-218ENST00000625286 MS4A1P11836 297 aa13.25□□□□□ -0.29
DDX41-218ENST00000625286 AKR1A1P14550 325 aa13.25□□□□□ -0.29
DDX41-218ENST00000625286 KCNA10Q16322 511 aa13.25□□□□□ -0.29
DDX41-218ENST00000625286 SNRNP48Q6IEG0 339 aaKnown RBP13.25□□□□□ -0.29
DDX41-218ENST00000625286 MAMDC4Q6UXC1 1216 aa13.25□□□□□ -0.29
DDX41-218ENST00000625286 ANKRD33Q7Z3H0 272 aa13.25□□□□□ -0.29
DDX41-218ENST00000625286 MAFAQ8NHW3 353 aaPredicted RBP13.25□□□□□ -0.29
DDX41-218ENST00000625286 TEX13BQ9BXU2 312 aa13.25□□□□□ -0.29
DDX41-218ENST00000625286 LRRCC1Q9C099 1032 aa13.25□□□□□ -0.29
DDX41-218ENST00000625286 CLIP2Q9UDT6 1046 aa13.25□□□□□ -0.29
DDX41-218ENST00000625286 MINDY4BA8MYZ0 360 aa13.24□□□□□ -0.29
DDX41-218ENST00000625286 M0R2C6 588 aa13.24□□□□□ -0.29
DDX41-218ENST00000625286 ATP2A1O14983 1001 aa13.24□□□□□ -0.29
DDX41-218ENST00000625286 CTAGE5O15320 804 aa13.24□□□□□ -0.29
DDX41-218ENST00000625286 PRDM1O75626 825 aa13.24□□□□□ -0.29
DDX41-218ENST00000625286 CDK7P50613 346 aa13.24□□□□□ -0.29
DDX41-218ENST00000625286 GRIN2CQ14957 1233 aa13.24□□□□□ -0.29
DDX41-218ENST00000625286 CPXCR1Q8N123 301 aa13.24□□□□□ -0.29
DDX41-218ENST00000625286 PRPF38AQ8NAV1 312 aaKnown RBP13.24□□□□□ -0.29
DDX41-218ENST00000625286 MKL1Q969V6 931 aa13.24□□□□□ -0.29
DDX41-218ENST00000625286 RNPC3Q96LT9 517 aaKnown RBP13.24□□□□□ -0.29
DDX41-218ENST00000625286 TOX2Q96NM4 488 aa13.24□□□□□ -0.29
DDX41-218ENST00000625286 TSEN34Q9BSV6 310 aaKnown RBP13.24□□□□□ -0.29
DDX41-218ENST00000625286 KATNBL1Q9H079 304 aa13.24□□□□□ -0.29
DDX41-218ENST00000625286 RAVER2Q9HCJ3 691 aaKnown RBP13.24□□□□□ -0.29
DDX41-218ENST00000625286 ECHDC1Q9NTX5 307 aa13.24□□□□□ -0.29
DDX41-218ENST00000625286 TMEM39AQ9NV64 488 aa13.24□□□□□ -0.29
DDX41-218ENST00000625286 ARPP21Q9UBL0 812 aaPredicted RBP13.24□□□□□ -0.29
DDX41-218ENST00000625286 CHD7Q9P2D1 2997 aa13.24□□□□□ -0.29
DDX41-218ENST00000625286 SYNGAP1Q96PV0 1343 aa13.23□□□□□ -0.29
DDX41-218ENST00000625286 RAG1P15918 1043 aa13.23□□□□□ -0.29
DDX41-218ENST00000625286 PTGS1P23219 599 aa13.23□□□□□ -0.29
DDX41-218ENST00000625286 SLC4A3P48751 1232 aa13.23□□□□□ -0.29
DDX41-218ENST00000625286 FPGSQ05932 587 aa13.23□□□□□ -0.29
DDX41-218ENST00000625286 ZSCAN25Q6NSZ9 544 aa13.23□□□□□ -0.29
DDX41-218ENST00000625286 GIMAP6Q6P9H5 292 aa13.23□□□□□ -0.29
DDX41-218ENST00000625286 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.23□□□□□ -0.29
DDX41-218ENST00000625286 AMOTL1Q8IY63 956 aa13.23□□□□□ -0.29
DDX41-218ENST00000625286 MSL3Q8N5Y2 521 aaKnown RBP13.23□□□□□ -0.29
DDX41-218ENST00000625286 KBTBD3Q8NAB2 608 aa13.23□□□□□ -0.29
DDX41-218ENST00000625286 USP38Q8NB14 1042 aa13.23□□□□□ -0.29
DDX41-218ENST00000625286 DDX11Q96FC9 970 aa13.23□□□□□ -0.29
DDX41-218ENST00000625286 CEP95Q96GE4 821 aa13.23□□□□□ -0.29
DDX41-218ENST00000625286 MKNK2Q9HBH9 465 aa13.23□□□□□ -0.29
DDX41-218ENST00000625286 SLC38A10Q9HBR0 1119 aa13.23□□□□□ -0.29
DDX41-218ENST00000625286 TBX21Q9UL17 535 aa13.23□□□□□ -0.29
DDX41-218ENST00000625286 FAM184BQ9ULE4 1060 aa13.23□□□□□ -0.29
DDX41-218ENST00000625286 CNPY2Q9Y2B0 182 aa13.23□□□□□ -0.29
DDX41-218ENST00000625286 DDX49Q9Y6V7 483 aaKnown RBP13.23□□□□□ -0.29
DDX41-218ENST00000625286 REV3LO60673 3130 aa13.22□□□□□ -0.29
DDX41-218ENST00000625286 GRXCR1A8MXD5 290 aa13.22□□□□□ -0.29
DDX41-218ENST00000625286 RNF113AO15541 343 aaKnown RBP13.22□□□□□ -0.29
DDX41-218ENST00000625286 DUSP11O75319 330 aaKnown RBP13.22□□□□□ -0.29
DDX41-218ENST00000625286 COPB2P35606 906 aa13.22□□□□□ -0.29
DDX41-218ENST00000625286 CNTN2Q02246 1040 aa13.22□□□□□ -0.29
DDX41-218ENST00000625286 ACVR2BQ13705 512 aa13.22□□□□□ -0.29
DDX41-218ENST00000625286 ZNF467Q7Z7K2 595 aaPredicted RBP13.22□□□□□ -0.29
DDX41-218ENST00000625286 KIFC2Q96AC6 838 aa13.22□□□□□ -0.29
DDX41-218ENST00000625286 DDRGK1Q96HY6 314 aa13.22□□□□□ -0.29
DDX41-218ENST00000625286 SEC62Q99442 399 aaKnown RBP13.22□□□□□ -0.29
DDX41-218ENST00000625286 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.22□□□□□ -0.293e-15■□□□□ 8.8
DDX41-218ENST00000625286 UPF3AQ9H1J1 476 aaKnown RBP13.22□□□□□ -0.29
DDX41-218ENST00000625286 DCTPP1Q9H773 170 aa13.22□□□□□ -0.29
DDX41-218ENST00000625286 STARD7Q9NQZ5 370 aa13.22□□□□□ -0.29
DDX41-218ENST00000625286 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.22□□□□□ -0.29
DDX41-218ENST00000625286 MTMR4Q9NYA4 1195 aa13.22□□□□□ -0.29
DDX41-218ENST00000625286 ZHX1Q9UKY1 873 aaPredicted RBP13.22□□□□□ -0.29
DDX41-218ENST00000625286 ASTN1O14525 1302 aa13.21□□□□□ -0.29
DDX41-218ENST00000625286 ZNF536O15090 1300 aa13.21□□□□□ -0.29
DDX41-218ENST00000625286 MOXD2PA6NHM9 499 aa13.21□□□□□ -0.29
DDX41-218ENST00000625286 GPAA1O43292 621 aa13.21□□□□□ -0.29
DDX41-218ENST00000625286 TIMP1P01033 207 aa13.21□□□□□ -0.29
DDX41-218ENST00000625286 ASGR1P07306 291 aa13.21□□□□□ -0.29
DDX41-218ENST00000625286 CST5P28325 142 aaPredicted RBP13.21□□□□□ -0.29
DDX41-218ENST00000625286 CCDC144BQ3MJ40 725 aa13.21□□□□□ -0.29
DDX41-218ENST00000625286 RASIP1Q5U651 963 aa13.21□□□□□ -0.29
DDX41-218ENST00000625286 DIEXFQ68CQ4 756 aaKnown RBP13.21□□□□□ -0.29
DDX41-218ENST00000625286 LRRC47Q8N1G4 583 aaKnown RBP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms