RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 TDP2O95551 362 aa12.03□□□□□ -0.48
VPS11-208ENST00000621676 TOP1P11387 765 aaKnown RBP12.03□□□□□ -0.48
VPS11-208ENST00000621676 SBK1Q52WX2 424 aa12.03□□□□□ -0.48
VPS11-208ENST00000621676 DNTTIP2Q5QJE6 756 aaKnown RBP12.03□□□□□ -0.48
VPS11-208ENST00000621676 BLIDQ8IZY5 108 aa12.03□□□□□ -0.48
VPS11-208ENST00000621676 TBCKQ8TEA7 893 aa12.03□□□□□ -0.48
VPS11-208ENST00000621676 WASF1Q92558 559 aa12.03□□□□□ -0.48
VPS11-208ENST00000621676 IL17RAQ96F46 866 aa12.03□□□□□ -0.48
VPS11-208ENST00000621676 TANGO6Q9C0B7 1094 aa12.03□□□□□ -0.48
VPS11-208ENST00000621676 CBX8Q9HC52 389 aa12.03□□□□□ -0.48
VPS11-208ENST00000621676 ANKRD36CQ5JPF3 1778 aa12.03□□□□□ -0.48
VPS11-208ENST00000621676 SMC2O95347 1197 aa12.03□□□□□ -0.48
VPS11-208ENST00000621676 FUT2Q10981 343 aa12.03□□□□□ -0.48
VPS11-208ENST00000621676 SPP2Q13103 211 aa12.03□□□□□ -0.48
VPS11-208ENST00000621676 MAEAQ7L5Y9 396 aa12.03□□□□□ -0.48
VPS11-208ENST00000621676 CYP2W1Q8TAV3 490 aa12.03□□□□□ -0.48
VPS11-208ENST00000621676 SYMPKQ92797 1274 aaKnown RBP12.03□□□□□ -0.48
VPS11-208ENST00000621676 ZDHHC15Q96MV8 337 aa12.03□□□□□ -0.48
VPS11-208ENST00000621676 TBC1D7Q9P0N9 293 aa12.03□□□□□ -0.48
VPS11-208ENST00000621676 CALM1P0DP23 149 aa12.02□□□□□ -0.49
VPS11-208ENST00000621676 CALM2P0DP24 149 aa12.02□□□□□ -0.49
VPS11-208ENST00000621676 CALM3P0DP25 149 aa12.02□□□□□ -0.49
VPS11-208ENST00000621676 EVCP57679 992 aa12.02□□□□□ -0.49
VPS11-208ENST00000621676 SNW1Q13573 536 aaKnown RBP12.02□□□□□ -0.49
VPS11-208ENST00000621676 RNF26Q9BY78 433 aaPredicted RBP12.02□□□□□ -0.49
VPS11-208ENST00000621676 HACL1Q9UJ83 578 aa12.02□□□□□ -0.49
VPS11-208ENST00000621676 WNK3Q9BYP7 1800 aa12.02□□□□□ -0.49
VPS11-208ENST00000621676 NDUFB10O96000 172 aa12.02□□□□□ -0.49
VPS11-208ENST00000621676 CHMP4BP1P59074 171 aa12.02□□□□□ -0.49
VPS11-208ENST00000621676 SLC39A14Q15043 492 aa12.02□□□□□ -0.49
VPS11-208ENST00000621676 DYMQ7RTS9 669 aa12.02□□□□□ -0.49
VPS11-208ENST00000621676 DGKHQ86XP1 1220 aa12.02□□□□□ -0.49
VPS11-208ENST00000621676 NOC3LQ8WTT2 800 aaKnown RBP12.02□□□□□ -0.49
VPS11-208ENST00000621676 DEFB129Q9H1M3 183 aa12.02□□□□□ -0.49
VPS11-208ENST00000621676 GGA3Q9NZ52 723 aa12.02□□□□□ -0.49
VPS11-208ENST00000621676 COL5A3P25940 1745 aaPredicted RBP12.02□□□□□ -0.49
VPS11-208ENST00000621676 A0A087X0B3 334 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 POTEMA6NI47 508 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 FAM160A1Q05DH4 1040 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 CLEC17AQ6ZS10 378 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 KRI1Q8N9T8 703 aaKnown RBP12.01□□□□□ -0.49
VPS11-208ENST00000621676 ZBTB9Q96C00 473 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 TMX1Q9H3N1 280 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 PCDHA5Q9Y5H7 936 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 N4BP2Q86UW6 1770 aaPredicted RBP12.01□□□□□ -0.49
VPS11-208ENST00000621676 C4AP0C0L4 1744 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 GAKO14976 1311 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 CACNA1SQ13698 1873 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 PRPF3O43395 683 aaKnown RBP12.01□□□□□ -0.49
VPS11-208ENST00000621676 IDEP14735 1019 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 CYP4A11Q02928 519 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 TUBGCP6Q96RT7 1819 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 ATP1A3P13637 1013 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 AXDND1Q5T1B0 1012 aaPredicted RBP12.01□□□□□ -0.49
VPS11-208ENST00000621676 ADALQ6DHV7 355 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 HHIPL2Q6UWX4 724 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 TMC4Q7Z404 712 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 FOXP4Q8IVH2 680 aaPredicted RBP12.01□□□□□ -0.49
VPS11-208ENST00000621676 KCNG4Q8TDN1 519 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 CPLX3Q8WVH0 158 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 SPON1Q9HCB6 807 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 UBR3Q6ZT12 1888 aa12.01□□□□□ -0.49
VPS11-208ENST00000621676 MEIS1O00470 390 aa12□□□□□ -0.49
VPS11-208ENST00000621676 PPP1R11O60927 126 aaPredicted RBP12□□□□□ -0.49
VPS11-208ENST00000621676 LRMPQ12912 555 aa12□□□□□ -0.49
VPS11-208ENST00000621676 PFKFB3Q16875 520 aaPredicted RBP12□□□□□ -0.49
VPS11-208ENST00000621676 QRICH1Q2TAL8 776 aa12□□□□□ -0.49
VPS11-208ENST00000621676 BRAPQ7Z569 592 aa12□□□□□ -0.49
VPS11-208ENST00000621676 JMJD4Q9H9V9 463 aa12□□□□□ -0.49
VPS11-208ENST00000621676 STAT3P40763 770 aa12□□□□□ -0.49
VPS11-208ENST00000621676 ZNF445P59923 1031 aa12□□□□□ -0.49
VPS11-208ENST00000621676 POTEDQ86YR6 584 aa12□□□□□ -0.49
VPS11-208ENST00000621676 WRNIP1Q96S55 665 aa12□□□□□ -0.49
VPS11-208ENST00000621676 CLSTN2Q9H4D0 955 aa12□□□□□ -0.49
VPS11-208ENST00000621676 TAF1LQ8IZX4 1826 aa12□□□□□ -0.49
VPS11-208ENST00000621676 ADM5C9JUS6 153 aa11.99□□□□□ -0.49
VPS11-208ENST00000621676 POTEIP0CG38 1075 aa11.99□□□□□ -0.49
VPS11-208ENST00000621676 POTEJP0CG39 1038 aa11.99□□□□□ -0.49
VPS11-208ENST00000621676 PTMSP20962 102 aa11.99□□□□□ -0.49
VPS11-208ENST00000621676 ZNF76P36508 570 aa11.99□□□□□ -0.49
VPS11-208ENST00000621676 NSMFQ6X4W1 530 aa11.99□□□□□ -0.49
VPS11-208ENST00000621676 SUPT20HQ8NEM7 779 aa11.99□□□□□ -0.49
VPS11-208ENST00000621676 SYT17Q9BSW7 474 aa11.99□□□□□ -0.49
VPS11-208ENST00000621676 RBM28Q9NW13 759 aaKnown RBP11.99□□□□□ -0.49
VPS11-208ENST00000621676 CDK11BP21127 795 aaKnown RBP11.99□□□□□ -0.49
VPS11-208ENST00000621676 SIAH1Q8IUQ4 282 aa11.99□□□□□ -0.49
VPS11-208ENST00000621676 PHF20Q9BVI0 1012 aa11.99□□□□□ -0.49
VPS11-208ENST00000621676 CTDP1Q9Y5B0 961 aaPredicted RBP11.99□□□□□ -0.49
VPS11-208ENST00000621676 ZHX2Q9Y6X8 837 aa11.99□□□□□ -0.49
VPS11-208ENST00000621676 DDAH1O94760 285 aa11.99□□□□□ -0.49
VPS11-208ENST00000621676 ALAS1P13196 640 aa11.99□□□□□ -0.49
VPS11-208ENST00000621676 PTPAQ15257 358 aa11.99□□□□□ -0.49
VPS11-208ENST00000621676 CDC37Q16543 378 aaPredicted RBP11.99□□□□□ -0.49
VPS11-208ENST00000621676 EEPD1Q7L9B9 569 aa11.99□□□□□ -0.49
VPS11-208ENST00000621676 AGBL1Q96MI9 1066 aa11.99□□□□□ -0.49
VPS11-208ENST00000621676 PSTPIP2Q9H939 334 aa11.99□□□□□ -0.49
VPS11-208ENST00000621676 NOL7Q9UMY1 257 aaKnown RBP11.99□□□□□ -0.49
VPS11-208ENST00000621676 PCDHA6Q9UN73 950 aa11.99□□□□□ -0.49
VPS11-208ENST00000621676 PCDHA8Q9Y5H6 950 aa11.99□□□□□ -0.49
VPS11-208ENST00000621676 H7C1D1 291 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms