RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 TRIM43BA6NCK2 446 aa29.77■■■□□ 2.36
PTPRF-216ENST00000617451 M0R2C6 588 aa29.77■■■□□ 2.36
PTPRF-216ENST00000617451 AKR1A1P14550 325 aa29.77■■■□□ 2.36
PTPRF-216ENST00000617451 TDO2P48775 406 aa29.77■■■□□ 2.36
PTPRF-216ENST00000617451 TLE2Q04725 743 aa29.77■■■□□ 2.36
PTPRF-216ENST00000617451 SHHQ15465 462 aa29.77■■■□□ 2.36
PTPRF-216ENST00000617451 ZNF444Q8N0Y2 327 aaPredicted RBP29.77■■■□□ 2.36
PTPRF-216ENST00000617451 MSL3Q8N5Y2 521 aaKnown RBP29.77■■■□□ 2.36
PTPRF-216ENST00000617451 MKL1Q969V6 931 aa29.77■■■□□ 2.36
PTPRF-216ENST00000617451 TRIM43Q96BQ3 446 aaPredicted RBP29.77■■■□□ 2.36
PTPRF-216ENST00000617451 ZNF287Q9HBT7 754 aa29.77■■■□□ 2.36
PTPRF-216ENST00000617451 CNPY2Q9Y2B0 182 aa29.77■■■□□ 2.36
PTPRF-216ENST00000617451 ATP2A1O14983 1001 aa29.76■■■□□ 2.35
PTPRF-216ENST00000617451 DNAJC25-GNG10A0A024R161 153 aa29.75■■■□□ 2.35
PTPRF-216ENST00000617451 PATL2C9JE40 543 aaKnown RBP29.75■■■□□ 2.35
PTPRF-216ENST00000617451 PRDM1O75626 825 aa29.75■■■□□ 2.35
PTPRF-216ENST00000617451 APPP05067 770 aa29.75■■■□□ 2.35
PTPRF-216ENST00000617451 C9orf50Q5SZB4 431 aa29.75■■■□□ 2.35
PTPRF-216ENST00000617451 GUCD1Q96NT3 240 aa29.75■■■□□ 2.35
PTPRF-216ENST00000617451 MTMR4Q9NYA4 1195 aa29.75■■■□□ 2.35
PTPRF-216ENST00000617451 SYNGAP1Q96PV0 1343 aa29.74■■■□□ 2.35
PTPRF-216ENST00000617451 MAMDC4Q6UXC1 1216 aa29.74■■■□□ 2.35
PTPRF-216ENST00000617451 LENG1Q96BZ8 264 aaPredicted RBP29.74■■■□□ 2.35
PTPRF-216ENST00000617451 DDX11Q96FC9 970 aa29.74■■■□□ 2.35
PTPRF-216ENST00000617451 CEP95Q96GE4 821 aa29.74■■■□□ 2.35
PTPRF-216ENST00000617451 SYNPO2Q9UMS6 1093 aa29.74■■■□□ 2.35
PTPRF-216ENST00000617451 TACC3Q9Y6A5 838 aa29.74■■■□□ 2.35
PTPRF-216ENST00000617451 A0A1W2PQ45 241 aaPredicted RBP29.73■■■□□ 2.35
PTPRF-216ENST00000617451 A0A1W2PQY0 241 aa29.73■■■□□ 2.35
PTPRF-216ENST00000617451 ZBED4O75132 1171 aa29.73■■■□□ 2.35
PTPRF-216ENST00000617451 ADAMTS4O75173 837 aa29.73■■■□□ 2.35
PTPRF-216ENST00000617451 SNAI1O95863 264 aaPredicted RBP29.73■■■□□ 2.35
PTPRF-216ENST00000617451 LRRFIP1Q32MZ4 808 aaKnown RBP29.73■■■□□ 2.35
PTPRF-216ENST00000617451 IFNL3Q8IZI9 196 aa29.73■■■□□ 2.35
PTPRF-216ENST00000617451 CPXCR1Q8N123 301 aa29.73■■■□□ 2.35
PTPRF-216ENST00000617451 SLC38A10Q9HBR0 1119 aa29.73■■■□□ 2.35
PTPRF-216ENST00000617451 DHX30Q7L2E3 1194 aaKnown RBP eCLIP29.72■■■□□ 2.35
PTPRF-216ENST00000617451 KIFC2Q96AC6 838 aa29.72■■■□□ 2.35
PTPRF-216ENST00000617451 TSEN34Q9BSV6 310 aaKnown RBP29.72■■■□□ 2.35
PTPRF-216ENST00000617451 FEM1BQ9UK73 627 aa29.72■■■□□ 2.35
PTPRF-216ENST00000617451 TTC41PQ6P2S7 1318 aa29.71■■■□□ 2.35
PTPRF-216ENST00000617451 TTLL1O95922 423 aa29.71■■■□□ 2.35
PTPRF-216ENST00000617451 ITGB8P26012 769 aa29.71■■■□□ 2.35
PTPRF-216ENST00000617451 ZNF467Q7Z7K2 595 aaPredicted RBP29.71■■■□□ 2.35
PTPRF-216ENST00000617451 GMCL1P1Q8NEA9 526 aa29.71■■■□□ 2.35
PTPRF-216ENST00000617451 FAM161BQ96MY7 647 aa29.71■■■□□ 2.35
PTPRF-216ENST00000617451 RAVER2Q9HCJ3 691 aaKnown RBP29.71■■■□□ 2.35
PTPRF-216ENST00000617451 FAM184BQ9ULE4 1060 aa29.71■■■□□ 2.35
PTPRF-216ENST00000617451 CTDP1Q9Y5B0 961 aaPredicted RBP29.71■■■□□ 2.35
PTPRF-216ENST00000617451 MYH4Q9Y623 1939 aa29.71■■■□□ 2.35
PTPRF-216ENST00000617451 CLTBP09497 229 aa29.7■■■□□ 2.35
PTPRF-216ENST00000617451 SLC4A3P48751 1232 aa29.7■■■□□ 2.35
PTPRF-216ENST00000617451 ZNF697Q5TEC3 545 aa29.7■■■□□ 2.35
PTPRF-216ENST00000617451 LRRC47Q8N1G4 583 aaKnown RBP29.7■■■□□ 2.35
PTPRF-216ENST00000617451 SEC62Q99442 399 aaKnown RBP29.7■■■□□ 2.35
PTPRF-216ENST00000617451 NACAP1Q9BZK3 213 aa29.7■■■□□ 2.35
PTPRF-216ENST00000617451 SYNRGQ9UMZ2 1314 aa29.7■■■□□ 2.34
PTPRF-216ENST00000617451 KIAA0355O15063 1070 aa29.69■■■□□ 2.34
PTPRF-216ENST00000617451 KLHDC9Q8NEP7 349 aa29.69■■■□□ 2.34
PTPRF-216ENST00000617451 NEDD1Q8NHV4 660 aa29.69■■■□□ 2.34
PTPRF-216ENST00000617451 PI4K2BQ8TCG2 481 aa29.69■■■□□ 2.34
PTPRF-216ENST00000617451 EYSQ5T1H1 3165 aa29.69■■■□□ 2.34
PTPRF-216ENST00000617451 PLIN4Q96Q06 1357 aa29.68■■■□□ 2.34
PTPRF-216ENST00000617451 ERC2O15083 957 aa29.68■■■□□ 2.34
PTPRF-216ENST00000617451 PQBP1O60828 265 aaKnown RBP29.68■■■□□ 2.34
PTPRF-216ENST00000617451 ACLYP53396 1101 aa29.68■■■□□ 2.34
PTPRF-216ENST00000617451 OAZ1P54368 228 aa29.68■■■□□ 2.34
PTPRF-216ENST00000617451 FBXO40Q9UH90 709 aa29.68■■■□□ 2.34
PTPRF-216ENST00000617451 ZHX1Q9UKY1 873 aaPredicted RBP29.68■■■□□ 2.34
PTPRF-216ENST00000617451 CDH23Q9H251 3354 aa29.68■■■□□ 2.34
PTPRF-216ENST00000617451 DUSP11O75319 330 aaKnown RBP29.67■■■□□ 2.34
PTPRF-216ENST00000617451 TSPY3P0CV98 308 aa29.67■■■□□ 2.34
PTPRF-216ENST00000617451 TSPY8P0CW00 308 aa29.67■■■□□ 2.34
PTPRF-216ENST00000617451 PDE4BQ07343 736 aa29.67■■■□□ 2.34
PTPRF-216ENST00000617451 SLFN13Q68D06 897 aa29.67■■■□□ 2.34
PTPRF-216ENST00000617451 CCSAPQ6IQ19 270 aaPredicted RBP29.67■■■□□ 2.34
PTPRF-216ENST00000617451 ANKRD33Q7Z3H0 272 aa29.67■■■□□ 2.34
PTPRF-216ENST00000617451 ANKRD35Q8N283 1001 aa29.67■■■□□ 2.34
PTPRF-216ENST00000617451 CHST13Q8NET6 341 aa29.67■■■□□ 2.34
PTPRF-216ENST00000617451 PCDHB15Q9Y5E8 787 aa29.67■■■□□ 2.34
PTPRF-216ENST00000617451 MOXD2PA6NHM9 499 aa29.66■■■□□ 2.34
PTPRF-216ENST00000617451 BMP3P12645 472 aa29.66■■■□□ 2.34
PTPRF-216ENST00000617451 SMAD3P84022 425 aaKnown RBP29.66■■■□□ 2.34
PTPRF-216ENST00000617451 ACVR2BQ13705 512 aa29.66■■■□□ 2.34
PTPRF-216ENST00000617451 ZMYM1Q5SVZ6 1142 aa29.66■■■□□ 2.34
PTPRF-216ENST00000617451 OTUD7AQ8TE49 926 aaPredicted RBP29.66■■■□□ 2.34
PTPRF-216ENST00000617451 NUP133Q8WUM0 1156 aa29.66■■■□□ 2.34
PTPRF-216ENST00000617451 FGD4Q96M96 766 aa29.66■■■□□ 2.34
PTPRF-216ENST00000617451 TOX2Q96NM4 488 aa29.66■■■□□ 2.34
PTPRF-216ENST00000617451 STARD7Q9NQZ5 370 aa29.66■■■□□ 2.34
PTPRF-216ENST00000617451 CDKN2AIPQ9NXV6 580 aaPredicted RBP29.66■■■□□ 2.34
PTPRF-216ENST00000617451 SLC3A2P08195 630 aaKnown RBP29.65■■■□□ 2.34
PTPRF-216ENST00000617451 RAG1P15918 1043 aa29.65■■■□□ 2.34
PTPRF-216ENST00000617451 TFAP4Q01664 338 aa29.65■■■□□ 2.34
PTPRF-216ENST00000617451 PPARAQ07869 468 aa29.65■■■□□ 2.34
PTPRF-216ENST00000617451 FAAP100Q0VG06 881 aa29.65■■■□□ 2.34
PTPRF-216ENST00000617451 KCNA10Q16322 511 aa29.65■■■□□ 2.34
PTPRF-216ENST00000617451 FSD1Q9BTV5 496 aa29.65■■■□□ 2.34
PTPRF-216ENST00000617451 NAPBQ9H115 298 aa29.65■■■□□ 2.34
PTPRF-216ENST00000617451 SEMA6BQ9H3T3 888 aa29.65■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms