RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 PATL2C9JE40 543 aaKnown RBP22.57■■□□□ 1.2
CDX1-202ENST00000616154 APPP05067 770 aa22.57■■□□□ 1.2
CDX1-202ENST00000616154 TRIM60Q495X7 471 aa22.57■■□□□ 1.2
CDX1-202ENST00000616154 ANKRD45Q5TZF3 282 aa22.57■■□□□ 1.2
CDX1-202ENST00000616154 SNRNP48Q6IEG0 339 aaKnown RBP22.57■■□□□ 1.2
CDX1-202ENST00000616154 IFNL3Q8IZI9 196 aa22.57■■□□□ 1.2
CDX1-202ENST00000616154 ZNF444Q8N0Y2 327 aaPredicted RBP22.57■■□□□ 1.2
CDX1-202ENST00000616154 MSL3Q8N5Y2 521 aaKnown RBP22.57■■□□□ 1.2
CDX1-202ENST00000616154 PLIN4Q96Q06 1357 aa22.57■■□□□ 1.2
CDX1-202ENST00000616154 MTMR10Q9NXD2 777 aa22.57■■□□□ 1.2
CDX1-202ENST00000616154 CLIP2Q9UDT6 1046 aa22.57■■□□□ 1.2
CDX1-202ENST00000616154 ATP2A1O14983 1001 aa22.57■■□□□ 1.2
CDX1-202ENST00000616154 PRDM1O75626 825 aa22.57■■□□□ 1.2
CDX1-202ENST00000616154 ZNF865P0CJ78 1059 aaPredicted RBP22.57■■□□□ 1.2
CDX1-202ENST00000616154 TAL1P17542 331 aaPredicted RBP22.57■■□□□ 1.2
CDX1-202ENST00000616154 FERMT2Q96AC1 680 aa22.57■■□□□ 1.2
CDX1-202ENST00000616154 CEP95Q96GE4 821 aa22.57■■□□□ 1.2
CDX1-202ENST00000616154 MTMR4Q9NYA4 1195 aa22.57■■□□□ 1.2
CDX1-202ENST00000616154 STXBP5LQ9Y2K9 1186 aa22.57■■□□□ 1.2
CDX1-202ENST00000616154 LAMA2P24043 3122 aaKnown RBP22.56■■□□□ 1.2
CDX1-202ENST00000616154 AKR1A1P14550 325 aa22.56■■□□□ 1.2
CDX1-202ENST00000616154 RNF180Q86T96 592 aa22.56■■□□□ 1.2
CDX1-202ENST00000616154 EXOC6Q8TAG9 804 aa22.56■■□□□ 1.2
CDX1-202ENST00000616154 NACAP1Q9BZK3 213 aa22.56■■□□□ 1.2
CDX1-202ENST00000616154 RWDD1Q9H446 243 aaPredicted RBP22.56■■□□□ 1.2
CDX1-202ENST00000616154 PRDM5Q9NQX1 630 aaPredicted RBP22.56■■□□□ 1.2
CDX1-202ENST00000616154 PDLIM7Q9NR12 457 aa22.56■■□□□ 1.2
CDX1-202ENST00000616154 CNPY2Q9Y2B0 182 aa22.56■■□□□ 1.2
CDX1-202ENST00000616154 RIPK3Q9Y572 518 aa22.56■■□□□ 1.2
CDX1-202ENST00000616154 MCM3APO60318 1980 aa22.55■■□□□ 1.2
CDX1-202ENST00000616154 SYNGAP1Q96PV0 1343 aa22.55■■□□□ 1.2
CDX1-202ENST00000616154 DNAJC25-GNG10A0A024R161 153 aa22.55■■□□□ 1.2
CDX1-202ENST00000616154 ZBED4O75132 1171 aa22.55■■□□□ 1.2
CDX1-202ENST00000616154 TTLL1O95922 423 aa22.55■■□□□ 1.2
CDX1-202ENST00000616154 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.55■■□□□ 1.2
CDX1-202ENST00000616154 GMCL1P1Q8NEA9 526 aa22.55■■□□□ 1.2
CDX1-202ENST00000616154 SEC62Q99442 399 aaKnown RBP22.55■■□□□ 1.2
CDX1-202ENST00000616154 SLC38A10Q9HBR0 1119 aa22.55■■□□□ 1.2
CDX1-202ENST00000616154 FEM1BQ9UK73 627 aa22.55■■□□□ 1.2
CDX1-202ENST00000616154 PGK1P00558 417 aa22.54■■□□□ 1.2
CDX1-202ENST00000616154 PDE1AP54750 535 aa22.54■■□□□ 1.2
CDX1-202ENST00000616154 FAM109BQ6ICB4 259 aaPredicted RBP22.54■■□□□ 1.2
CDX1-202ENST00000616154 MAMDC4Q6UXC1 1216 aa22.54■■□□□ 1.2
CDX1-202ENST00000616154 TICAM2Q86XR7 235 aa22.54■■□□□ 1.2
CDX1-202ENST00000616154 NEDD1Q8NHV4 660 aa22.54■■□□□ 1.2
CDX1-202ENST00000616154 DDX11Q96FC9 970 aa22.54■■□□□ 1.2
CDX1-202ENST00000616154 FSD1Q9BTV5 496 aa22.54■■□□□ 1.2
CDX1-202ENST00000616154 ZBTB47Q9UFB7 747 aaPredicted RBP22.54■■□□□ 1.2
CDX1-202ENST00000616154 PDE4BQ07343 736 aa22.53■■□□□ 1.2
CDX1-202ENST00000616154 ZMYM1Q5SVZ6 1142 aa22.53■■□□□ 1.2
CDX1-202ENST00000616154 ZNF467Q7Z7K2 595 aaPredicted RBP22.53■■□□□ 1.2
CDX1-202ENST00000616154 CPXCR1Q8N123 301 aa22.53■■□□□ 1.2
CDX1-202ENST00000616154 LRRC47Q8N1G4 583 aaKnown RBP22.53■■□□□ 1.2
CDX1-202ENST00000616154 KIFC2Q96AC6 838 aa22.53■■□□□ 1.2
CDX1-202ENST00000616154 CTDP1Q9Y5B0 961 aaPredicted RBP22.53■■□□□ 1.2
CDX1-202ENST00000616154 POTEB2H3BUK9 544 aa22.52■■□□□ 1.2
CDX1-202ENST00000616154 ADAMTS4O75173 837 aa22.52■■□□□ 1.2
CDX1-202ENST00000616154 NEFLP07196 543 aa22.52■■□□□ 1.2
CDX1-202ENST00000616154 SLC3A2P08195 630 aaKnown RBP22.52■■□□□ 1.2
CDX1-202ENST00000616154 TSPY3P0CV98 308 aa22.52■■□□□ 1.2
CDX1-202ENST00000616154 TSPY8P0CW00 308 aa22.52■■□□□ 1.2
CDX1-202ENST00000616154 OAZ1P54368 228 aa22.52■■□□□ 1.2
CDX1-202ENST00000616154 IRX6P78412 446 aaPredicted RBP22.52■■□□□ 1.2
CDX1-202ENST00000616154 TLE2Q04725 743 aa22.52■■□□□ 1.2
CDX1-202ENST00000616154 BADQ92934 168 aa22.52■■□□□ 1.2
CDX1-202ENST00000616154 LENG1Q96BZ8 264 aaPredicted RBP22.52■■□□□ 1.2
CDX1-202ENST00000616154 NAPBQ9H115 298 aa22.52■■□□□ 1.2
CDX1-202ENST00000616154 RAVER2Q9HCJ3 691 aaKnown RBP22.52■■□□□ 1.2
CDX1-202ENST00000616154 A0A1W2PQ45 241 aaPredicted RBP22.51■■□□□ 1.19
CDX1-202ENST00000616154 A0A1W2PQY0 241 aa22.51■■□□□ 1.19
CDX1-202ENST00000616154 TRIM43BA6NCK2 446 aa22.51■■□□□ 1.19
CDX1-202ENST00000616154 SNAI1O95863 264 aaPredicted RBP22.51■■□□□ 1.19
CDX1-202ENST00000616154 IGHDP01880 384 aa22.51■■□□□ 1.19
CDX1-202ENST00000616154 PPARAQ07869 468 aa22.51■■□□□ 1.19
CDX1-202ENST00000616154 ERICH6BQ5W0A0 696 aa22.51■■□□□ 1.19
CDX1-202ENST00000616154 SLFN13Q68D06 897 aa22.51■■□□□ 1.19
CDX1-202ENST00000616154 SH3RF1Q7Z6J0 888 aa22.51■■□□□ 1.19
CDX1-202ENST00000616154 TRIM43Q96BQ3 446 aaPredicted RBP22.51■■□□□ 1.19
CDX1-202ENST00000616154 TSEN34Q9BSV6 310 aaKnown RBP22.51■■□□□ 1.19
CDX1-202ENST00000616154 FBXO40Q9UH90 709 aa22.51■■□□□ 1.19
CDX1-202ENST00000616154 SYNRGQ9UMZ2 1314 aa22.5■■□□□ 1.19
CDX1-202ENST00000616154 FDX1P10109 184 aa22.5■■□□□ 1.19
CDX1-202ENST00000616154 BMP3P12645 472 aa22.5■■□□□ 1.19
CDX1-202ENST00000616154 SLC4A3P48751 1232 aa22.5■■□□□ 1.19
CDX1-202ENST00000616154 CHST13Q8NET6 341 aa22.5■■□□□ 1.19
CDX1-202ENST00000616154 EVI5LQ96CN4 794 aa22.5■■□□□ 1.19
CDX1-202ENST00000616154 FAM184BQ9ULE4 1060 aa22.5■■□□□ 1.19
CDX1-202ENST00000616154 TACC3Q9Y6A5 838 aa22.5■■□□□ 1.19
CDX1-202ENST00000616154 CUL9Q8IWT3 2517 aa22.5■■□□□ 1.19
CDX1-202ENST00000616154 A0A0C4DFX4 3053 aa22.49■■□□□ 1.19
CDX1-202ENST00000616154 CLTBP09497 229 aa22.49■■□□□ 1.19
CDX1-202ENST00000616154 TFAP4Q01664 338 aa22.49■■□□□ 1.19
CDX1-202ENST00000616154 NUCB1Q02818 461 aa22.49■■□□□ 1.19
CDX1-202ENST00000616154 SHHQ15465 462 aa22.49■■□□□ 1.19
CDX1-202ENST00000616154 ANKRD35Q8N283 1001 aa22.49■■□□□ 1.19
CDX1-202ENST00000616154 FGD4Q96M96 766 aa22.49■■□□□ 1.19
CDX1-202ENST00000616154 ZHX1Q9UKY1 873 aaPredicted RBP22.49■■□□□ 1.19
CDX1-202ENST00000616154 PPP4R3BQ5MIZ7 849 aa22.48■■□□□ 1.19
CDX1-202ENST00000616154 C9orf50Q5SZB4 431 aa22.48■■□□□ 1.19
CDX1-202ENST00000616154 KLHDC9Q8NEP7 349 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms