RNA–Protein interactions for RNA: ENST00000612558.4

CCDC47-207, Transcript of coiled-coil domain containing 47, humanhuman

TSL 5 BASIC

Gene CCDC47, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-207ENST00000612558 TTLL1O95922 423 aa10.3□□□□□ -0.76
CCDC47-207ENST00000612558 U2AF2P26368 475 aaKnown RBP eCLIP10.3□□□□□ -0.763e-7■■■■□ 26.6
CCDC47-207ENST00000612558 SAFBQ15424 915 aaKnown RBP eCLIP10.3□□□□□ -0.76
CCDC47-207ENST00000612558 PKN1Q16512 942 aa10.3□□□□□ -0.76
CCDC47-207ENST00000612558 CERKLQ49MI3 558 aaPredicted RBP10.3□□□□□ -0.76
CCDC47-207ENST00000612558 LEO1Q8WVC0 666 aaPredicted RBP10.3□□□□□ -0.76
CCDC47-207ENST00000612558 ZBED3Q96IU2 234 aaPredicted RBP10.3□□□□□ -0.76
CCDC47-207ENST00000612558 MTRQ99707 1265 aa10.3□□□□□ -0.76
CCDC47-207ENST00000612558 LZTS2Q9BRK4 669 aa10.3□□□□□ -0.76
CCDC47-207ENST00000612558 DNAJC18Q9H819 358 aa10.3□□□□□ -0.76
CCDC47-207ENST00000612558 MYOZ2Q9NPC6 264 aa10.3□□□□□ -0.76
CCDC47-207ENST00000612558 MAD2L2Q9UI95 211 aa10.3□□□□□ -0.76
CCDC47-207ENST00000612558 CNTNAP5Q8WYK1 1306 aa10.29□□□□□ -0.76
CCDC47-207ENST00000612558 MYH15Q9Y2K3 1946 aa10.29□□□□□ -0.76
CCDC47-207ENST00000612558 CLRN2A0PK11 232 aa10.29□□□□□ -0.76
CCDC47-207ENST00000612558 PALM3A6NDB9 673 aaPredicted RBP10.29□□□□□ -0.76
CCDC47-207ENST00000612558 TCP10L2B9ZVM9 353 aa10.29□□□□□ -0.76
CCDC47-207ENST00000612558 MPHOSPH10O00566 681 aaKnown RBP10.29□□□□□ -0.76
CCDC47-207ENST00000612558 MMP1P03956 469 aa10.29□□□□□ -0.76
CCDC47-207ENST00000612558 SMARCA1P28370 1054 aa10.29□□□□□ -0.76
CCDC47-207ENST00000612558 ZNF280AP59817 542 aaPredicted RBP10.29□□□□□ -0.76
CCDC47-207ENST00000612558 GNL2Q13823 731 aaKnown RBP10.29□□□□□ -0.76
CCDC47-207ENST00000612558 CAVIN1Q6NZI2 390 aaKnown RBP10.29□□□□□ -0.76
CCDC47-207ENST00000612558 FAM83AQ86UY5 434 aa10.29□□□□□ -0.76
CCDC47-207ENST00000612558 DPF2Q92785 391 aa10.29□□□□□ -0.76
CCDC47-207ENST00000612558 CSRNP1Q96S65 589 aa10.29□□□□□ -0.76
CCDC47-207ENST00000612558 WDR70Q9NW82 654 aa10.29□□□□□ -0.76
CCDC47-207ENST00000612558 RCOR1Q9UKL0 485 aa10.29□□□□□ -0.76
CCDC47-207ENST00000612558 SIPA1L1O43166 1804 aa10.28□□□□□ -0.76
CCDC47-207ENST00000612558 GOLGA6L4A6NEF3 574 aa10.28□□□□□ -0.76
CCDC47-207ENST00000612558 KIF28PB7ZC32 967 aa10.28□□□□□ -0.76
CCDC47-207ENST00000612558 KLRF2D3W0D1 207 aa10.28□□□□□ -0.76
CCDC47-207ENST00000612558 SMAPO00193 183 aa10.28□□□□□ -0.76
CCDC47-207ENST00000612558 WNT10BO00744 389 aa10.28□□□□□ -0.76
CCDC47-207ENST00000612558 PARP1P09874 1014 aaKnown RBP10.28□□□□□ -0.76
CCDC47-207ENST00000612558 PRELPP51888 382 aa10.28□□□□□ -0.76
CCDC47-207ENST00000612558 E2F4Q16254 413 aa10.28□□□□□ -0.76
CCDC47-207ENST00000612558 MYSM1Q5VVJ2 828 aa10.28□□□□□ -0.76
CCDC47-207ENST00000612558 STAG2Q8N3U4 1231 aa10.28□□□□□ -0.76
CCDC47-207ENST00000612558 SYAP1Q96A49 352 aaPredicted RBP10.28□□□□□ -0.76
CCDC47-207ENST00000612558 USP28Q96RU2 1077 aa10.28□□□□□ -0.76
CCDC47-207ENST00000612558 FHDC1Q9C0D6 1143 aaPredicted RBP10.28□□□□□ -0.76
CCDC47-207ENST00000612558 FOXP1Q9H334 677 aaPredicted RBP10.28□□□□□ -0.76
CCDC47-207ENST00000612558 KANSL2Q9H9L4 492 aa10.28□□□□□ -0.76
CCDC47-207ENST00000612558 RTEL1Q9NZ71 1219 aa10.28□□□□□ -0.76
CCDC47-207ENST00000612558 CLIP2Q9UDT6 1046 aa10.28□□□□□ -0.76
CCDC47-207ENST00000612558 HERC5Q9UII4 1024 aaKnown RBP10.28□□□□□ -0.76
CCDC47-207ENST00000612558 FAM196BA6NMK8 535 aa10.27□□□□□ -0.76
CCDC47-207ENST00000612558 SCG2P13521 617 aa10.27□□□□□ -0.76
CCDC47-207ENST00000612558 GGCXP38435 758 aa10.27□□□□□ -0.76
CCDC47-207ENST00000612558 PFKFB3Q16875 520 aaPredicted RBP10.27□□□□□ -0.76
CCDC47-207ENST00000612558 ARHGAP27Q6ZUM4 889 aa10.27□□□□□ -0.76
CCDC47-207ENST00000612558 TMEM179Q6ZVK1 233 aa10.27□□□□□ -0.76
CCDC47-207ENST00000612558 NOSTRINQ8IVI9 506 aa10.27□□□□□ -0.76
CCDC47-207ENST00000612558 DIS3L2Q8IYB7 885 aaKnown RBP10.27□□□□□ -0.76
CCDC47-207ENST00000612558 MKL1Q969V6 931 aa10.27□□□□□ -0.76
CCDC47-207ENST00000612558 PHF20Q9BVI0 1012 aa10.27□□□□□ -0.76
CCDC47-207ENST00000612558 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.27□□□□□ -0.76
CCDC47-207ENST00000612558 VEZTQ9HBM0 779 aa10.27□□□□□ -0.76
CCDC47-207ENST00000612558 POLR3EQ9NVU0 708 aa10.27□□□□□ -0.76
CCDC47-207ENST00000612558 KCNJ14Q9UNX9 436 aa10.27□□□□□ -0.76
CCDC47-207ENST00000612558 MTMR7Q9Y216 660 aa10.27□□□□□ -0.76
CCDC47-207ENST00000612558 GREB1LQ9C091 1923 aaPredicted RBP10.27□□□□□ -0.77
CCDC47-207ENST00000612558 hCG_1642624A0A1W2PR95 340 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 GRXCR2A6NFK2 248 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 BTBD18B2RXH4 712 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 RNF40O75150 1001 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 YEATS4O95619 227 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 SLURP2P0DP57 97 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 SNHG28P0DPA3 235 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 PDHBP11177 359 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 LMNB1P20700 586 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 TNNI2P48788 182 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 NASPP49321 788 aaPredicted RBP10.26□□□□□ -0.77
CCDC47-207ENST00000612558 GMPSP49915 693 aaPredicted RBP10.26□□□□□ -0.77
CCDC47-207ENST00000612558 CEBPZQ03701 1054 aaKnown RBP10.26□□□□□ -0.77
CCDC47-207ENST00000612558 ABCB5Q2M3G0 1257 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 NBPF9Q3BBW0 867 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 ASPRV1Q53RT3 343 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 RBM26Q5T8P6 1007 aaKnown RBP10.26□□□□□ -0.77
CCDC47-207ENST00000612558 PPP1R18Q6NYC8 613 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 USP17L2Q6R6M4 530 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 SPZ1Q9BXG8 430 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 SH3GLB2Q9NR46 395 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.26□□□□□ -0.77
CCDC47-207ENST00000612558 VPS54Q9P1Q0 977 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 TMEM63CQ9P1W3 806 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 NYAP2Q9P242 653 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 CNOT7Q9UIV1 285 aaKnown RBP10.26□□□□□ -0.77
CCDC47-207ENST00000612558 GJA3Q9Y6H8 435 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 CNTNAP1P78357 1384 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 SHTN1A0MZ66 631 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 USP17L5A8MUK1 530 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 CYTH3O43739 400 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 GOLGA8HP0CJ92 632 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 ZSCAN23Q3MJ62 389 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 ANO1Q5XXA6 986 aa10.26□□□□□ -0.77
CCDC47-207ENST00000612558 FAM177A1Q8N128 213 aaPredicted RBP10.26□□□□□ -0.77
CCDC47-207ENST00000612558 LRRC47Q8N1G4 583 aaKnown RBP10.26□□□□□ -0.77
CCDC47-207ENST00000612558 LINC00301Q8NCQ3 95 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms