RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 PPFIA4O75335 1185 aa20.6■□□□□ 0.89
UPF1-210ENST00000600689 KRT2P35908 639 aa20.6■□□□□ 0.89
UPF1-210ENST00000600689 TCP11X2Q5H9J9 407 aa20.6■□□□□ 0.89
UPF1-210ENST00000600689 SELENOOQ9BVL4 669 aa20.6■□□□□ 0.89
UPF1-210ENST00000600689 EHD2Q9NZN4 543 aa20.6■□□□□ 0.89
UPF1-210ENST00000600689 LUC7L2Q9Y383 392 aaKnown RBP20.6■□□□□ 0.89
UPF1-210ENST00000600689 RCCD1A6NED2 376 aa20.59■□□□□ 0.89
UPF1-210ENST00000600689 HDAC7Q8WUI4 952 aa20.59■□□□□ 0.89
UPF1-210ENST00000600689 PPM1EQ8WY54 764 aa20.59■□□□□ 0.89
UPF1-210ENST00000600689 AATFQ9NY61 560 aaKnown RBP eCLIP20.59■□□□□ 0.89
UPF1-210ENST00000600689 LOC102724159A0A0B4J2E5 919 aa20.59■□□□□ 0.89
UPF1-210ENST00000600689 GOLGA6CA6NDK9 693 aa20.59■□□□□ 0.89
UPF1-210ENST00000600689 GOLGA6DP0CG33 693 aa20.59■□□□□ 0.89
UPF1-210ENST00000600689 IDEP14735 1019 aa20.59■□□□□ 0.89
UPF1-210ENST00000600689 PWP2Q15269 919 aaKnown RBP20.59■□□□□ 0.89
UPF1-210ENST00000600689 ZNF579Q8NAF0 562 aaKnown RBP20.59■□□□□ 0.89
UPF1-210ENST00000600689 GSDMAQ96QA5 445 aa20.59■□□□□ 0.89
UPF1-210ENST00000600689 KRT23Q9C075 422 aa20.59■□□□□ 0.89
UPF1-210ENST00000600689 AGPAT5Q9NUQ2 364 aa20.59■□□□□ 0.89
UPF1-210ENST00000600689 GOLGA6AQ9NYA3 693 aa20.59■□□□□ 0.89
UPF1-210ENST00000600689 WNK3Q9BYP7 1800 aa20.59■□□□□ 0.89
UPF1-210ENST00000600689 TNKSO95271 1327 aa20.59■□□□□ 0.89
UPF1-210ENST00000600689 MYH14Q7Z406 1995 aaKnown RBP20.59■□□□□ 0.89
UPF1-210ENST00000600689 AHDC1Q5TGY3 1603 aaPredicted RBP20.59■□□□□ 0.89
UPF1-210ENST00000600689 COL22A1Q8NFW1 1626 aaPredicted RBP20.59■□□□□ 0.89
UPF1-210ENST00000600689 ADAMTS3O15072 1205 aa20.59■□□□□ 0.89
UPF1-210ENST00000600689 PRCPP42785 496 aa20.59■□□□□ 0.89
UPF1-210ENST00000600689 HERVK_113P62684 666 aa20.59■□□□□ 0.89
UPF1-210ENST00000600689 TTC38Q5R3I4 469 aa20.59■□□□□ 0.89
UPF1-210ENST00000600689 TICAM2Q86XR7 235 aa20.59■□□□□ 0.89
UPF1-210ENST00000600689 MYH7P12883 1935 aa20.58■□□□□ 0.89
UPF1-210ENST00000600689 ZPR1O75312 459 aa20.58■□□□□ 0.89
UPF1-210ENST00000600689 CAMTA2O94983 1202 aa20.58■□□□□ 0.89
UPF1-210ENST00000600689 VEGFAP15692 232 aaPredicted RBP20.58■□□□□ 0.89
UPF1-210ENST00000600689 PMS1P54277 932 aaKnown RBP20.58■□□□□ 0.89
UPF1-210ENST00000600689 MAP3K12Q12852 859 aa20.58■□□□□ 0.89
UPF1-210ENST00000600689 RASGRF1Q13972 1273 aa20.58■□□□□ 0.89
UPF1-210ENST00000600689 FBXW10Q5XX13 1052 aa20.58■□□□□ 0.89
UPF1-210ENST00000600689 SPATA5Q8NB90 893 aa20.58■□□□□ 0.89
UPF1-210ENST00000600689 FAM76AQ8TAV0 307 aa20.58■□□□□ 0.89
UPF1-210ENST00000600689 MTRQ99707 1265 aa20.58■□□□□ 0.89
UPF1-210ENST00000600689 LRP2BPQ9P2M1 347 aa20.58■□□□□ 0.89
UPF1-210ENST00000600689 MYH8P13535 1937 aa20.58■□□□□ 0.89
UPF1-210ENST00000600689 STK36Q9NRP7 1315 aa20.58■□□□□ 0.89
UPF1-210ENST00000600689 TRAPPC11Q7Z392 1133 aa20.58■□□□□ 0.88
UPF1-210ENST00000600689 KRT26Q7Z3Y9 468 aa20.58■□□□□ 0.88
UPF1-210ENST00000600689 NIP7Q9Y221 180 aaKnown RBP eCLIP20.58■□□□□ 0.88
UPF1-210ENST00000600689 TCRBV5S4A2TA0A5A2 114 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 PP2D1A8MPX8 630 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 B4DLN1 442 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 PARP1P09874 1014 aaKnown RBP20.57■□□□□ 0.88
UPF1-210ENST00000600689 PUM3Q15397 648 aaKnown RBP20.57■□□□□ 0.88
UPF1-210ENST00000600689 KCTD16Q68DU8 428 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 OR8K1Q8NGG5 319 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 BCAS4Q8TDM0 211 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 COG1Q8WTW3 980 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 DEF6Q9H4E7 631 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 GOLGA6BA6NDN3 693 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 PRPF6O94906 941 aaKnown RBP20.57■□□□□ 0.88
UPF1-210ENST00000600689 XBP1P17861 261 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 TRIM21P19474 475 aaKnown RBP20.57■□□□□ 0.88
UPF1-210ENST00000600689 MAP9Q49MG5 647 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 CCDC51Q96ER9 411 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 C4AP0C0L4 1744 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 C4BP0C0L5 1744 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 CCDC196A0A1B0GTZ2 297 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 FGFR2P21802 821 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 BCAMP50895 628 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 ATP1A2P50993 1020 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 ANKRD13CQ8N6S4 541 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 RASGRP4Q8TDF6 673 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 TRIM47Q96LD4 638 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 NACAP1Q9BZK3 213 aa20.57■□□□□ 0.88
UPF1-210ENST00000600689 WTIPA6NIX2 430 aaPredicted RBP20.56■□□□□ 0.88
UPF1-210ENST00000600689 LPIN2Q92539 896 aa20.56■□□□□ 0.88
UPF1-210ENST00000600689 CNNM2Q9H8M5 875 aa20.56■□□□□ 0.88
UPF1-210ENST00000600689 GNGT1P63211 74 aa20.56■□□□□ 0.88
UPF1-210ENST00000600689 IPO7O95373 1038 aaKnown RBP20.55■□□□□ 0.88
UPF1-210ENST00000600689 ARID4AP29374 1257 aaPredicted RBP20.55■□□□□ 0.88
UPF1-210ENST00000600689 EVX2Q03828 476 aa20.55■□□□□ 0.88
UPF1-210ENST00000600689 TUBB2AQ13885 445 aa20.55■□□□□ 0.88
UPF1-210ENST00000600689 WDR93Q6P2C0 686 aa20.55■□□□□ 0.88
UPF1-210ENST00000600689 TADA2BQ86TJ2 420 aa20.55■□□□□ 0.88
UPF1-210ENST00000600689 TUBB2BQ9BVA1 445 aa20.55■□□□□ 0.88
UPF1-210ENST00000600689 ZEB2O60315 1214 aa20.55■□□□□ 0.88
UPF1-210ENST00000600689 SH3RF1Q7Z6J0 888 aa20.55■□□□□ 0.88
UPF1-210ENST00000600689 ABCC12Q96J65 1359 aa20.55■□□□□ 0.88
UPF1-210ENST00000600689 AGPSO00116 658 aa20.55■□□□□ 0.88
UPF1-210ENST00000600689 NLRP5P59047 1200 aa20.55■□□□□ 0.88
UPF1-210ENST00000600689 LIMA1Q9UHB6 759 aaKnown RBP20.55■□□□□ 0.88
UPF1-210ENST00000600689 NMT2O60551 498 aa20.54■□□□□ 0.88
UPF1-210ENST00000600689 RPN1P04843 607 aaKnown RBP20.54■□□□□ 0.88
UPF1-210ENST00000600689 PLEKP08567 350 aaPredicted RBP20.54■□□□□ 0.88
UPF1-210ENST00000600689 PKN1Q16512 942 aa20.54■□□□□ 0.88
UPF1-210ENST00000600689 CCDC96Q2M329 555 aa20.54■□□□□ 0.88
UPF1-210ENST00000600689 PTF1AQ7RTS3 328 aa20.54■□□□□ 0.88
UPF1-210ENST00000600689 ELOA2Q8IYF1 753 aaPredicted RBP20.54■□□□□ 0.88
UPF1-210ENST00000600689 SH2D3CQ8N5H7 860 aa20.54■□□□□ 0.88
UPF1-210ENST00000600689 ZNF512BQ96KM6 892 aaPredicted RBP20.54■□□□□ 0.88
UPF1-210ENST00000600689 DMGDHQ9UI17 866 aaKnown RBP20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms