RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	INHA	P05111	366 aa		10.37	□□□□□ -0.75
SSBP4-208	ENST00000600628	GJB1	P08034	283 aa		10.37	□□□□□ -0.75
SSBP4-208	ENST00000600628	CCL5	P13501	91 aa		10.37	□□□□□ -0.75
SSBP4-208	ENST00000600628	CAPN2	P17655	700 aa		10.37	□□□□□ -0.75
SSBP4-208	ENST00000600628	GJA8	P48165	433 aa		10.37	□□□□□ -0.75
SSBP4-208	ENST00000600628	NECTIN1	Q15223	517 aa		10.37	□□□□□ -0.75
SSBP4-208	ENST00000600628	STOX1	Q6ZVD7	989 aa		10.37	□□□□□ -0.75
SSBP4-208	ENST00000600628	CCAR1	Q8IX12	1150 aa	Known RBP	10.37	□□□□□ -0.75
SSBP4-208	ENST00000600628	TRMT44	Q8IYL2	757 aa	Known RBP	10.37	□□□□□ -0.75
SSBP4-208	ENST00000600628	ENAH	Q8N8S7	591 aa	Predicted RBP	10.37	□□□□□ -0.75
SSBP4-208	ENST00000600628	DCAF4	Q8WV16	495 aa		10.37	□□□□□ -0.75
SSBP4-208	ENST00000600628	ESR2	Q92731	530 aa		10.37	□□□□□ -0.75
SSBP4-208	ENST00000600628	APBA2	Q99767	749 aa		10.37	□□□□□ -0.75
SSBP4-208	ENST00000600628	CRISPLD2	Q9H0B8	497 aa		10.37	□□□□□ -0.75
SSBP4-208	ENST00000600628	CNNM2	Q9H8M5	875 aa		10.37	□□□□□ -0.75
SSBP4-208	ENST00000600628	RIPK3	Q9Y572	518 aa		10.37	□□□□□ -0.75
SSBP4-208	ENST00000600628		U3KPZ7	1027 aa	Predicted RBP	10.37	□□□□□ -0.75
SSBP4-208	ENST00000600628	LAMA2	P24043	3122 aa	Known RBP	10.36	□□□□□ -0.75
SSBP4-208	ENST00000600628		B4E1Z4	1266 aa		10.36	□□□□□ -0.75
SSBP4-208	ENST00000600628	COBL	O75128	1261 aa		10.36	□□□□□ -0.75
SSBP4-208	ENST00000600628	KDM4A	O75164	1064 aa		10.36	□□□□□ -0.75
SSBP4-208	ENST00000600628	PDHB	P11177	359 aa		10.36	□□□□□ -0.75
SSBP4-208	ENST00000600628	MCC	P23508	829 aa		10.36	□□□□□ -0.75
SSBP4-208	ENST00000600628	STAT3	P40763	770 aa		10.36	□□□□□ -0.75
SSBP4-208	ENST00000600628	ZNF543	Q08ER8	600 aa		10.36	□□□□□ -0.75
SSBP4-208	ENST00000600628	TRIM32	Q13049	653 aa		10.36	□□□□□ -0.75
SSBP4-208	ENST00000600628	COL9A3	Q14050	684 aa	Predicted RBP	10.36	□□□□□ -0.75
SSBP4-208	ENST00000600628	OLFML2B	Q68BL8	750 aa		10.36	□□□□□ -0.75
SSBP4-208	ENST00000600628	FAM160B2	Q86V87	743 aa		10.36	□□□□□ -0.75
SSBP4-208	ENST00000600628	NPLOC4	Q8TAT6	608 aa		10.36	□□□□□ -0.75
SSBP4-208	ENST00000600628	CHURC1	Q8WUH1	139 aa		10.36	□□□□□ -0.75
SSBP4-208	ENST00000600628	RNF208	Q9H0X6	261 aa		10.36	□□□□□ -0.75
SSBP4-208	ENST00000600628	UNC93B1	Q9H1C4	597 aa		10.36	□□□□□ -0.75
SSBP4-208	ENST00000600628	FLRT1	Q9NZU1	646 aa		10.36	□□□□□ -0.75
SSBP4-208	ENST00000600628	STX8	Q9UNK0	236 aa		10.36	□□□□□ -0.75
SSBP4-208	ENST00000600628	MCM3AP	O60318	1980 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	RPTOR	Q8N122	1335 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	LAMA3	Q16787	3333 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	TMEM232	C9JQI7	657 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628		E7EWF7	191 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	CYP2B6	P20813	491 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	ADORA2A	P29274	412 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	COPB2	P35606	906 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	RGS2	P41220	211 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	SLC1A4	P43007	532 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	MNX1	P50219	401 aa	Predicted RBP	10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	STAT2	P52630	851 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	ANTXR2	P58335	489 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	CCL14	Q16627	93 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	TSGA10IP	Q3SY00	556 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	CCDC178	Q5BJE1	867 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	RRP12	Q5JTH9	1297 aa	Known RBP	10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	CYB5R4	Q7L1T6	521 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	MB21D2	Q8IYB1	491 aa	Predicted RBP	10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	KCNB2	Q92953	911 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	MTA3	Q9BTC8	594 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	TEX13B	Q9BXU2	312 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	KRT23	Q9C075	422 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	PPP4R2	Q9NY27	417 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	DIS3	Q9Y2L1	958 aa	Known RBP	10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	RBM8A	Q9Y5S9	174 aa	Known RBP	10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	ALPK3	Q96L96	1907 aa		10.35	□□□□□ -0.75
SSBP4-208	ENST00000600628	SGPL1	O95470	568 aa		10.34	□□□□□ -0.75
SSBP4-208	ENST00000600628	CACNB2	Q08289	660 aa	Predicted RBP	10.34	□□□□□ -0.75
SSBP4-208	ENST00000600628	ZNF792	Q3KQV3	632 aa		10.34	□□□□□ -0.75
SSBP4-208	ENST00000600628	LHX8	Q68G74	356 aa		10.34	□□□□□ -0.75
SSBP4-208	ENST00000600628	KCTD1	Q719H9	257 aa		10.34	□□□□□ -0.75
SSBP4-208	ENST00000600628	IQCA1	Q86XH1	822 aa		10.34	□□□□□ -0.75
SSBP4-208	ENST00000600628	IGDCC4	Q8TDY8	1250 aa		10.34	□□□□□ -0.75
SSBP4-208	ENST00000600628	FGD4	Q96M96	766 aa		10.34	□□□□□ -0.75
SSBP4-208	ENST00000600628	RANBP17	Q9H2T7	1088 aa	Known RBP	10.34	□□□□□ -0.75
SSBP4-208	ENST00000600628	PRR12	Q9ULL5	1215 aa		10.34	□□□□□ -0.75
SSBP4-208	ENST00000600628	MYH6	P13533	1939 aa		10.34	□□□□□ -0.75
SSBP4-208	ENST00000600628	TNKS	O95271	1327 aa		10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	RAD21	O60216	631 aa		10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	CDC45	O75419	566 aa		10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	CYBA	P13498	195 aa		10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	PRKAR2A	P13861	404 aa	Known RBP	10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	GPATCH4	Q5T3I0	446 aa	Known RBP	10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	SNRNP48	Q6IEG0	339 aa	Known RBP	10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	TTBK2	Q6IQ55	1244 aa		10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	MAMDC4	Q6UXC1	1216 aa		10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	ZNF467	Q7Z7K2	595 aa	Predicted RBP	10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	PNMA1	Q8ND90	353 aa		10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	TRPV1	Q8NER1	839 aa		10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	CHST13	Q8NET6	341 aa		10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	U2AF1L4	Q8WU68	220 aa	Known RBP	10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	KIFC2	Q96AC6	838 aa		10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	MTMR8	Q96EF0	704 aa		10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	MAML3	Q96JK9	1138 aa		10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	ZKSCAN3	Q9BRR0	538 aa		10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	CWC22	Q9HCG8	908 aa	Known RBP	10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	TOMM22	Q9NS69	142 aa		10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	OGDHL	Q9ULD0	1010 aa		10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	IVNS1ABP	Q9Y6Y0	642 aa		10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	BAZ2B	Q9UIF8	2168 aa	Known RBP	10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	LRRC37A2	A6NM11	1700 aa		10.33	□□□□□ -0.76
SSBP4-208	ENST00000600628	SLC27A2	O14975	620 aa		10.32	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms