RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 CCDC129Q6ZRS4 1044 aa20.94■□□□□ 0.94
SHKBP1-223ENST00000600552 PRPF38AQ8NAV1 312 aaKnown RBP20.94■□□□□ 0.94
SHKBP1-223ENST00000600552 SLC17A8Q8NDX2 589 aa20.94■□□□□ 0.94
SHKBP1-223ENST00000600552 PI4K2BQ8TCG2 481 aa20.94■□□□□ 0.94
SHKBP1-223ENST00000600552 LENG1Q96BZ8 264 aaPredicted RBP20.94■□□□□ 0.94
SHKBP1-223ENST00000600552 TEX13BQ9BXU2 312 aa20.94■□□□□ 0.94
SHKBP1-223ENST00000600552 XPNPEP3Q9NQH7 507 aa20.94■□□□□ 0.94
SHKBP1-223ENST00000600552 RIPK3Q9Y572 518 aa20.94■□□□□ 0.94
SHKBP1-223ENST00000600552 SLC3A2P08195 630 aaKnown RBP20.93■□□□□ 0.94
SHKBP1-223ENST00000600552 MX1P20591 662 aa20.93■□□□□ 0.94
SHKBP1-223ENST00000600552 TFAP4Q01664 338 aa20.93■□□□□ 0.94
SHKBP1-223ENST00000600552 PDE4BQ07343 736 aa20.93■□□□□ 0.94
SHKBP1-223ENST00000600552 LRIT3Q3SXY7 679 aa20.93■□□□□ 0.94
SHKBP1-223ENST00000600552 SLFN13Q68D06 897 aa20.93■□□□□ 0.94
SHKBP1-223ENST00000600552 CRBNQ96SW2 442 aa20.93■□□□□ 0.94
SHKBP1-223ENST00000600552 MTMR4Q9NYA4 1195 aa20.93■□□□□ 0.94
SHKBP1-223ENST00000600552 MTMR7Q9Y216 660 aa20.93■□□□□ 0.94
SHKBP1-223ENST00000600552 CNPY2Q9Y2B0 182 aa20.93■□□□□ 0.94
SHKBP1-223ENST00000600552 ROBO3Q96MS0 1386 aa20.93■□□□□ 0.94
SHKBP1-223ENST00000600552 IGKV6D-41A0A0C4DH26 115 aa20.92■□□□□ 0.94
SHKBP1-223ENST00000600552 TTLL1O95922 423 aa20.92■□□□□ 0.94
SHKBP1-223ENST00000600552 RRP1P56182 461 aaKnown RBP20.92■□□□□ 0.94
SHKBP1-223ENST00000600552 IKQ13123 557 aaPredicted RBP20.92■□□□□ 0.94
SHKBP1-223ENST00000600552 ZMYM1Q5SVZ6 1142 aa20.92■□□□□ 0.94
SHKBP1-223ENST00000600552 HOMER2Q9NSB8 354 aa20.92■□□□□ 0.94
SHKBP1-223ENST00000600552 ZHX1Q9UKY1 873 aaPredicted RBP20.92■□□□□ 0.94
SHKBP1-223ENST00000600552 GREB1LQ9C091 1923 aaPredicted RBP20.92■□□□□ 0.94
SHKBP1-223ENST00000600552 CTDSPL2Q05D32 466 aa20.91■□□□□ 0.94
SHKBP1-223ENST00000600552 PPARAQ07869 468 aa20.91■□□□□ 0.94
SHKBP1-223ENST00000600552 DNAH12Q6ZR08 3092 aa20.91■□□□□ 0.94
SHKBP1-223ENST00000600552 ANKRD35Q8N283 1001 aa20.91■□□□□ 0.94
SHKBP1-223ENST00000600552 INCENPQ9NQS7 918 aa20.91■□□□□ 0.94
SHKBP1-223ENST00000600552 FEM1BQ9UK73 627 aa20.91■□□□□ 0.94
SHKBP1-223ENST00000600552 TMEM232C9JQI7 657 aa20.9■□□□□ 0.94
SHKBP1-223ENST00000600552 BMP3P12645 472 aa20.9■□□□□ 0.94
SHKBP1-223ENST00000600552 RNF180Q86T96 592 aa20.9■□□□□ 0.94
SHKBP1-223ENST00000600552 NEDD1Q8NHV4 660 aa20.9■□□□□ 0.94
SHKBP1-223ENST00000600552 DIS3Q9Y2L1 958 aaKnown RBP20.9■□□□□ 0.94
SHKBP1-223ENST00000600552 ZNF865P0CJ78 1059 aaPredicted RBP20.89■□□□□ 0.93
SHKBP1-223ENST00000600552 AKR1A1P14550 325 aa20.89■□□□□ 0.93
SHKBP1-223ENST00000600552 TLE2Q04725 743 aa20.89■□□□□ 0.93
SHKBP1-223ENST00000600552 SH3RF1Q7Z6J0 888 aa20.89■□□□□ 0.93
SHKBP1-223ENST00000600552 BADQ92934 168 aa20.89■□□□□ 0.93
SHKBP1-223ENST00000600552 MKL1Q969V6 931 aa20.89■□□□□ 0.93
SHKBP1-223ENST00000600552 NRBP1Q9UHY1 535 aa20.89■□□□□ 0.93
SHKBP1-223ENST00000600552 MCCP23508 829 aa20.88■□□□□ 0.93
SHKBP1-223ENST00000600552 SNAP25P60880 206 aa20.88■□□□□ 0.93
SHKBP1-223ENST00000600552 YTHDC1Q96MU7 727 aaKnown RBP20.88■□□□□ 0.93
SHKBP1-223ENST00000600552 FAM161BQ96MY7 647 aa20.88■□□□□ 0.93
SHKBP1-223ENST00000600552 SLC38A10Q9HBR0 1119 aa20.88■□□□□ 0.93
SHKBP1-223ENST00000600552 STX8Q9UNK0 236 aa20.88■□□□□ 0.93
SHKBP1-223ENST00000600552 TSPY2A6NKD2 308 aa20.87■□□□□ 0.93
SHKBP1-223ENST00000600552 PQBP1O60828 265 aaKnown RBP20.87■□□□□ 0.93
SHKBP1-223ENST00000600552 SNAI1O95863 264 aaPredicted RBP20.87■□□□□ 0.93
SHKBP1-223ENST00000600552 GMCL1P1Q8NEA9 526 aa20.87■□□□□ 0.93
SHKBP1-223ENST00000600552 PDLIM7Q9NR12 457 aa20.87■□□□□ 0.93
SHKBP1-223ENST00000600552 TOMM22Q9NS69 142 aa20.87■□□□□ 0.93
SHKBP1-223ENST00000600552 FAM184BQ9ULE4 1060 aa20.87■□□□□ 0.93
SHKBP1-223ENST00000600552 PHF24Q9UPV7 400 aa20.87■□□□□ 0.93
SHKBP1-223ENST00000600552 TRIM43BA6NCK2 446 aa20.86■□□□□ 0.93
SHKBP1-223ENST00000600552 RANBP6O60518 1105 aaKnown RBP20.86■□□□□ 0.93
SHKBP1-223ENST00000600552 NMT2O60551 498 aa20.86■□□□□ 0.93
SHKBP1-223ENST00000600552 SLC1A4P43007 532 aa20.86■□□□□ 0.93
SHKBP1-223ENST00000600552 SHHQ15465 462 aa20.86■□□□□ 0.93
SHKBP1-223ENST00000600552 VPS53Q5VIR6 699 aa20.86■□□□□ 0.93
SHKBP1-223ENST00000600552 GPR153Q6NV75 609 aa20.86■□□□□ 0.93
SHKBP1-223ENST00000600552 CCDC174Q6PII3 467 aa20.86■□□□□ 0.93
SHKBP1-223ENST00000600552 KCTD1Q719H9 257 aa20.86■□□□□ 0.93
SHKBP1-223ENST00000600552 VTI1AQ96AJ9 217 aa20.86■□□□□ 0.93
SHKBP1-223ENST00000600552 TRIM43Q96BQ3 446 aaPredicted RBP20.86■□□□□ 0.93
SHKBP1-223ENST00000600552 MTMR10Q9NXD2 777 aa20.86■□□□□ 0.93
SHKBP1-223ENST00000600552 A0A1W2PQ45 241 aaPredicted RBP20.85■□□□□ 0.93
SHKBP1-223ENST00000600552 A0A1W2PQY0 241 aa20.85■□□□□ 0.93
SHKBP1-223ENST00000600552 RRP12Q5JTH9 1297 aaKnown RBP20.85■□□□□ 0.93
SHKBP1-223ENST00000600552 C9orf50Q5SZB4 431 aa20.85■□□□□ 0.93
SHKBP1-223ENST00000600552 AGBL1Q96MI9 1066 aa20.85■□□□□ 0.93
SHKBP1-223ENST00000600552 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.85■□□□□ 0.93
SHKBP1-223ENST00000600552 MCM3APO60318 1980 aa20.85■□□□□ 0.93
SHKBP1-223ENST00000600552 STAT2P52630 851 aa20.84■□□□□ 0.93
SHKBP1-223ENST00000600552 IRX5P78411 483 aaPredicted RBP20.84■□□□□ 0.93
SHKBP1-223ENST00000600552 CNTN2Q02246 1040 aa20.84■□□□□ 0.93
SHKBP1-223ENST00000600552 ACVR2BQ13705 512 aa20.84■□□□□ 0.93
SHKBP1-223ENST00000600552 SNX17Q15036 470 aa20.84■□□□□ 0.93
SHKBP1-223ENST00000600552 NOL8Q76FK4 1167 aaKnown RBP20.84■□□□□ 0.93
SHKBP1-223ENST00000600552 CHST13Q8NET6 341 aa20.84■□□□□ 0.93
SHKBP1-223ENST00000600552 CHURC1Q8WUH1 139 aa20.84■□□□□ 0.93
SHKBP1-223ENST00000600552 EVI5LQ96CN4 794 aa20.84■□□□□ 0.93
SHKBP1-223ENST00000600552 FBXO40Q9UH90 709 aa20.84■□□□□ 0.93
SHKBP1-223ENST00000600552 LAMA3Q16787 3333 aa20.84■□□□□ 0.93
SHKBP1-223ENST00000600552 SYNGAP1Q96PV0 1343 aa20.83■□□□□ 0.93
SHKBP1-223ENST00000600552 SYNRGQ9UMZ2 1314 aa20.83■□□□□ 0.93
SHKBP1-223ENST00000600552 DNAJC25-GNG10A0A024R161 153 aa20.83■□□□□ 0.93
SHKBP1-223ENST00000600552 POTEB2H3BUK9 544 aa20.83■□□□□ 0.93
SHKBP1-223ENST00000600552 ATP2A1O14983 1001 aa20.83■□□□□ 0.93
SHKBP1-223ENST00000600552 ALAS1P13196 640 aa20.83■□□□□ 0.93
SHKBP1-223ENST00000600552 ACLYP53396 1101 aa20.83■□□□□ 0.93
SHKBP1-223ENST00000600552 KCNA10Q16322 511 aa20.83■□□□□ 0.93
SHKBP1-223ENST00000600552 CCDC96Q2M329 555 aa20.83■□□□□ 0.93
SHKBP1-223ENST00000600552 RASGRP2Q7LDG7 609 aa20.83■□□□□ 0.93
SHKBP1-223ENST00000600552 MSL3Q8N5Y2 521 aaKnown RBP20.83■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms