RNA–Protein interactions for RNA: ENST00000600236.1

HIF3A-217, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 313 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-217ENST00000600236 RTP1P59025 263 aa13.58□□□□□ -0.24
HIF3A-217ENST00000600236 TFAP4Q01664 338 aa13.58□□□□□ -0.24
HIF3A-217ENST00000600236 AAMPQ13685 434 aa13.58□□□□□ -0.24
HIF3A-217ENST00000600236 LRIT3Q3SXY7 679 aa13.58□□□□□ -0.24
HIF3A-217ENST00000600236 SLFN13Q68D06 897 aa13.58□□□□□ -0.24
HIF3A-217ENST00000600236 GPR153Q6NV75 609 aa13.58□□□□□ -0.24
HIF3A-217ENST00000600236 RNF180Q86T96 592 aa13.58□□□□□ -0.24
HIF3A-217ENST00000600236 CPXCR1Q8N123 301 aa13.58□□□□□ -0.24
HIF3A-217ENST00000600236 LRRC47Q8N1G4 583 aaKnown RBP13.58□□□□□ -0.24
HIF3A-217ENST00000600236 CRBNQ96SW2 442 aa13.58□□□□□ -0.24
HIF3A-217ENST00000600236 XPNPEP3Q9NQH7 507 aa13.58□□□□□ -0.24
HIF3A-217ENST00000600236 ATP11BQ9Y2G3 1177 aa13.58□□□□□ -0.24
HIF3A-217ENST00000600236 TSPY2A6NKD2 308 aa13.57□□□□□ -0.24
HIF3A-217ENST00000600236 SOX1O00570 391 aaPredicted RBP13.57□□□□□ -0.24
HIF3A-217ENST00000600236 BMP3P12645 472 aa13.57□□□□□ -0.24
HIF3A-217ENST00000600236 MDM2Q00987 491 aaPredicted RBP13.57□□□□□ -0.24
HIF3A-217ENST00000600236 HDAC1Q13547 482 aaPredicted RBP13.57□□□□□ -0.24
HIF3A-217ENST00000600236 LRRC41Q15345 812 aa13.57□□□□□ -0.24
HIF3A-217ENST00000600236 FAM47AQ5JRC9 791 aa13.57□□□□□ -0.24
HIF3A-217ENST00000600236 ANKRD35Q8N283 1001 aa13.57□□□□□ -0.24
HIF3A-217ENST00000600236 CHST13Q8NET6 341 aa13.57□□□□□ -0.24
HIF3A-217ENST00000600236 LRCH3Q96II8 777 aa13.57□□□□□ -0.24
HIF3A-217ENST00000600236 HELLSQ9NRZ9 838 aa13.57□□□□□ -0.24
HIF3A-217ENST00000600236 SYNGAP1Q96PV0 1343 aa13.57□□□□□ -0.24
HIF3A-217ENST00000600236 RLFQ13129 1914 aa13.56□□□□□ -0.24
HIF3A-217ENST00000600236 SLC1A4P43007 532 aa13.56□□□□□ -0.24
HIF3A-217ENST00000600236 STAT2P52630 851 aa13.56□□□□□ -0.24
HIF3A-217ENST00000600236 IKQ13123 557 aaPredicted RBP13.56□□□□□ -0.24
HIF3A-217ENST00000600236 SLC39A5Q6ZMH5 540 aa13.56□□□□□ -0.24
HIF3A-217ENST00000600236 FAM160B2Q86V87 743 aa13.56□□□□□ -0.24
HIF3A-217ENST00000600236 TICAM2Q86XR7 235 aa13.56□□□□□ -0.24
HIF3A-217ENST00000600236 CHURC1Q8WUH1 139 aa13.56□□□□□ -0.24
HIF3A-217ENST00000600236 SLC38A10Q9HBR0 1119 aa13.56□□□□□ -0.24
HIF3A-217ENST00000600236 RAVER2Q9HCJ3 691 aaKnown RBP13.56□□□□□ -0.24
HIF3A-217ENST00000600236 STX8Q9UNK0 236 aa13.56□□□□□ -0.24
HIF3A-217ENST00000600236 SALL3Q9BXA9 1300 aa13.56□□□□□ -0.24
HIF3A-217ENST00000600236 ALPK3Q96L96 1907 aa13.56□□□□□ -0.24
HIF3A-217ENST00000600236 GREB1LQ9C091 1923 aaPredicted RBP13.55□□□□□ -0.24
HIF3A-217ENST00000600236 TMEM232C9JQI7 657 aa13.55□□□□□ -0.24
HIF3A-217ENST00000600236 ADCYAP1R1P41586 468 aa13.55□□□□□ -0.24
HIF3A-217ENST00000600236 PDE1AP54750 535 aa13.55□□□□□ -0.24
HIF3A-217ENST00000600236 C1orf53Q5VUE5 145 aa13.55□□□□□ -0.24
HIF3A-217ENST00000600236 ZNF467Q7Z7K2 595 aaPredicted RBP13.55□□□□□ -0.24
HIF3A-217ENST00000600236 GMCL1Q96IK5 515 aa13.55□□□□□ -0.24
HIF3A-217ENST00000600236 PRDM5Q9NQX1 630 aaPredicted RBP13.55□□□□□ -0.24
HIF3A-217ENST00000600236 ZHX1Q9UKY1 873 aaPredicted RBP13.55□□□□□ -0.24
HIF3A-217ENST00000600236 FAM184BQ9ULE4 1060 aa13.55□□□□□ -0.24
HIF3A-217ENST00000600236 PHF24Q9UPV7 400 aa13.55□□□□□ -0.24
HIF3A-217ENST00000600236 RIPK3Q9Y572 518 aa13.55□□□□□ -0.24
HIF3A-217ENST00000600236 RANBP6O60518 1105 aaKnown RBP13.54□□□□□ -0.24
HIF3A-217ENST00000600236 ZNF865P0CJ78 1059 aaPredicted RBP13.54□□□□□ -0.24
HIF3A-217ENST00000600236 SNX17Q15036 470 aa13.54□□□□□ -0.24
HIF3A-217ENST00000600236 TRIM60Q495X7 471 aa13.54□□□□□ -0.24
HIF3A-217ENST00000600236 MAMDC4Q6UXC1 1216 aa13.54□□□□□ -0.24
HIF3A-217ENST00000600236 CCDC129Q6ZRS4 1044 aa13.54□□□□□ -0.24
HIF3A-217ENST00000600236 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.54□□□□□ -0.24
HIF3A-217ENST00000600236 STAG1Q8WVM7 1258 aa13.54□□□□□ -0.24
HIF3A-217ENST00000600236 FERMT2Q96AC1 680 aa13.54□□□□□ -0.24
HIF3A-217ENST00000600236 ACAD9Q9H845 621 aa13.54□□□□□ -0.24
HIF3A-217ENST00000600236 TOMM22Q9NS69 142 aa13.54□□□□□ -0.24
HIF3A-217ENST00000600236 SUPT16HQ9Y5B9 1047 aaKnown RBP13.54□□□□□ -0.24
HIF3A-217ENST00000600236 DNAJC25-GNG10A0A024R161 153 aa13.53□□□□□ -0.24
HIF3A-217ENST00000600236 TRIM6-TRIM34B2RNG4 842 aa13.53□□□□□ -0.24
HIF3A-217ENST00000600236 PGK1P00558 417 aa13.53□□□□□ -0.24
HIF3A-217ENST00000600236 CTDSPL2Q05D32 466 aa13.53□□□□□ -0.24
HIF3A-217ENST00000600236 TKFCQ3LXA3 575 aa13.53□□□□□ -0.24
HIF3A-217ENST00000600236 MCMDC2Q4G0Z9 681 aa13.53□□□□□ -0.24
HIF3A-217ENST00000600236 NUP133Q8WUM0 1156 aa13.53□□□□□ -0.24
HIF3A-217ENST00000600236 TSEN34Q9BSV6 310 aaKnown RBP13.53□□□□□ -0.24
HIF3A-217ENST00000600236 ABHD16BQ9H3Z7 469 aa13.53□□□□□ -0.24
HIF3A-217ENST00000600236 RWDD1Q9H446 243 aaPredicted RBP13.53□□□□□ -0.24
HIF3A-217ENST00000600236 SPC25Q9HBM1 224 aa13.53□□□□□ -0.24
HIF3A-217ENST00000600236 ANAPC4Q9UJX5 808 aa13.53□□□□□ -0.24
HIF3A-217ENST00000600236 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.53□□□□□ -0.24
HIF3A-217ENST00000600236 TRIOBPQ9H2D6 2365 aa13.53□□□□□ -0.24
HIF3A-217ENST00000600236 FRMPD3Q5JV73 1810 aa13.53□□□□□ -0.24
HIF3A-217ENST00000600236 MOXD2PA6NHM9 499 aa13.52□□□□□ -0.25
HIF3A-217ENST00000600236 PLA2G6O60733 806 aa13.52□□□□□ -0.25
HIF3A-217ENST00000600236 TAL1P17542 331 aaPredicted RBP13.52□□□□□ -0.25
HIF3A-217ENST00000600236 MCCP23508 829 aa13.52□□□□□ -0.25
HIF3A-217ENST00000600236 MFAP1P55081 439 aaKnown RBP13.52□□□□□ -0.25
HIF3A-217ENST00000600236 ALX1Q15699 326 aa13.52□□□□□ -0.25
HIF3A-217ENST00000600236 DEFB123Q8N688 67 aa13.52□□□□□ -0.25
HIF3A-217ENST00000600236 STARD7Q9NQZ5 370 aa13.52□□□□□ -0.25
HIF3A-217ENST00000600236 HOMER2Q9NSB8 354 aa13.52□□□□□ -0.25
HIF3A-217ENST00000600236 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.52□□□□□ -0.25
HIF3A-217ENST00000600236 TACC3Q9Y6A5 838 aa13.52□□□□□ -0.25
HIF3A-217ENST00000600236 PARP14Q460N5 1801 aa13.52□□□□□ -0.25
HIF3A-217ENST00000600236 ZMYM6O95789 1325 aa13.51□□□□□ -0.25
HIF3A-217ENST00000600236 A0A1W2PQ45 241 aaPredicted RBP13.51□□□□□ -0.25
HIF3A-217ENST00000600236 A0A1W2PQY0 241 aa13.51□□□□□ -0.25
HIF3A-217ENST00000600236 POTEB2H3BUK9 544 aa13.51□□□□□ -0.25
HIF3A-217ENST00000600236 ORC4O43929 436 aa13.51□□□□□ -0.25
HIF3A-217ENST00000600236 ADAMTS4O75173 837 aa13.51□□□□□ -0.25
HIF3A-217ENST00000600236 DUSP11O75319 330 aaKnown RBP13.51□□□□□ -0.25
HIF3A-217ENST00000600236 SNAI1O95863 264 aaPredicted RBP13.51□□□□□ -0.25
HIF3A-217ENST00000600236 NEFLP07196 543 aa13.51□□□□□ -0.25
HIF3A-217ENST00000600236 ACVR2BQ13705 512 aa13.51□□□□□ -0.25
HIF3A-217ENST00000600236 CCDC96Q2M329 555 aa13.51□□□□□ -0.25
HIF3A-217ENST00000600236 VPS53Q5VIR6 699 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms