RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 FAM178BQ8IXR5 827 aa22.53■■□□□ 1.2
UPF1-207ENST00000599848 USTQ9Y2C2 406 aa22.53■■□□□ 1.2
UPF1-207ENST00000599848 USP19O94966 1318 aa22.53■■□□□ 1.2
UPF1-207ENST00000599848 K7ENM7 598 aa22.53■■□□□ 1.2
UPF1-207ENST00000599848 SRGAP2BP0DMP2 458 aa22.53■■□□□ 1.2
UPF1-207ENST00000599848 TTLL3Q9Y4R7 772 aa22.53■■□□□ 1.2
UPF1-207ENST00000599848 RRP9O43818 475 aaKnown RBP22.53■■□□□ 1.2
UPF1-207ENST00000599848 FMNL1O95466 1100 aaPredicted RBP22.53■■□□□ 1.2
UPF1-207ENST00000599848 C1orf228Q6PIY5 440 aa22.53■■□□□ 1.2
UPF1-207ENST00000599848 TBRG4Q969Z0 631 aaKnown RBP eCLIP22.53■■□□□ 1.21e-7■■■■■ 75.8
UPF1-207ENST00000599848 ZBED2Q9BTP6 218 aa22.53■■□□□ 1.2
UPF1-207ENST00000599848 GPR108Q9NPR9 543 aa22.53■■□□□ 1.2
UPF1-207ENST00000599848 MAGI2Q86UL8 1455 aa22.52■■□□□ 1.2
UPF1-207ENST00000599848 IQCA1LA6NCM1 817 aa22.52■■□□□ 1.2
UPF1-207ENST00000599848 GCFC2P16383 781 aaKnown RBP22.52■■□□□ 1.2
UPF1-207ENST00000599848 LMNB1P20700 586 aa22.52■■□□□ 1.2
UPF1-207ENST00000599848 COPB2P35606 906 aa22.52■■□□□ 1.2
UPF1-207ENST00000599848 ANKRD36BP1Q96IX9 119 aa22.52■■□□□ 1.2
UPF1-207ENST00000599848 ARHGAP24Q8N264 748 aa22.52■■□□□ 1.2
UPF1-207ENST00000599848 COA7Q96BR5 231 aa22.52■■□□□ 1.2
UPF1-207ENST00000599848 PCDHA1Q9Y5I3 950 aa22.52■■□□□ 1.2
UPF1-207ENST00000599848 KLRF2D3W0D1 207 aa22.52■■□□□ 1.2
UPF1-207ENST00000599848 LAD1O00515 517 aa22.52■■□□□ 1.2
UPF1-207ENST00000599848 CIAO1O76071 339 aa22.52■■□□□ 1.2
UPF1-207ENST00000599848 UBE3CQ15386 1083 aa22.52■■□□□ 1.2
UPF1-207ENST00000599848 MASTLQ96GX5 879 aa22.52■■□□□ 1.2
UPF1-207ENST00000599848 LRRIQ4A6NIV6 560 aa22.52■■□□□ 1.2
UPF1-207ENST00000599848 ERVV-1B6SEH8 477 aa22.52■■□□□ 1.2
UPF1-207ENST00000599848 RSRC2Q7L4I2 434 aaKnown RBP22.52■■□□□ 1.2
UPF1-207ENST00000599848 EFCAB13Q8IY85 973 aa22.52■■□□□ 1.2
UPF1-207ENST00000599848 UBLCP1Q8WVY7 318 aaPredicted RBP22.52■■□□□ 1.2
UPF1-207ENST00000599848 SECISBP2LQ93073 1101 aaKnown RBP22.52■■□□□ 1.2
UPF1-207ENST00000599848 PPP2R3CQ969Q6 453 aa22.52■■□□□ 1.2
UPF1-207ENST00000599848 DONSONQ9NYP3 566 aa22.52■■□□□ 1.2
UPF1-207ENST00000599848 RNF8O76064 485 aa22.51■■□□□ 1.19
UPF1-207ENST00000599848 USH1CQ9Y6N9 552 aa22.51■■□□□ 1.19
UPF1-207ENST00000599848 HEXIM1O94992 359 aaKnown RBP22.51■■□□□ 1.19
UPF1-207ENST00000599848 LACTBP83111 547 aaPredicted RBP22.51■■□□□ 1.19
UPF1-207ENST00000599848 RSAD2Q8WXG1 361 aa22.51■■□□□ 1.19
UPF1-207ENST00000599848 CAPZA3Q96KX2 299 aa22.51■■□□□ 1.19
UPF1-207ENST00000599848 DYMQ7RTS9 669 aa22.51■■□□□ 1.19
UPF1-207ENST00000599848 PALM2Q8IXS6 379 aa22.51■■□□□ 1.19
UPF1-207ENST00000599848 RPUSD2Q8IZ73 545 aaKnown RBP22.51■■□□□ 1.19
UPF1-207ENST00000599848 AKT3Q9Y243 479 aa22.51■■□□□ 1.19
UPF1-207ENST00000599848 POLR2DO15514 142 aaKnown RBP22.51■■□□□ 1.19
UPF1-207ENST00000599848 C8orf74Q6P047 294 aa22.51■■□□□ 1.19
UPF1-207ENST00000599848 IFT20Q8IY31 132 aa22.51■■□□□ 1.19
UPF1-207ENST00000599848 SEPT12Q8IYM1 358 aa22.51■■□□□ 1.19
UPF1-207ENST00000599848 NDUFAF2Q8N183 169 aa22.51■■□□□ 1.19
UPF1-207ENST00000599848 TM6SF1Q9BZW5 370 aa22.51■■□□□ 1.19
UPF1-207ENST00000599848 SGSM2O43147 1006 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 S100BP04271 92 aaPredicted RBP22.5■■□□□ 1.19
UPF1-207ENST00000599848 ANXA13P27216 316 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 MAGEA1P43355 309 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 MTMR3Q13615 1198 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 KRT24Q2M2I5 525 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 IFNL3Q8IZI9 196 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 OR52Z1P0C646 297 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 GAP43P17677 238 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 RIC8AQ9NPQ8 531 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 ZHX1Q9UKY1 873 aaPredicted RBP22.5■■□□□ 1.19
UPF1-207ENST00000599848 EIF3CLB5ME19 914 aaKnown RBP22.5■■□□□ 1.19
UPF1-207ENST00000599848 TTLL1O95922 423 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 SATB1Q01826 763 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 RC3H1Q5TC82 1133 aaKnown RBP22.5■■□□□ 1.19
UPF1-207ENST00000599848 RUFY4Q6ZNE9 571 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 EIF3CQ99613 913 aaKnown RBP22.5■■□□□ 1.19
UPF1-207ENST00000599848 MLH3Q9UHC1 1453 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 PHBP35232 272 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 PDE6CP51160 858 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 FAM47AQ5JRC9 791 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 RINT1Q6NUQ1 792 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 ARMCX5Q6P1M9 558 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 EXOC4Q96A65 974 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 TRIM11Q96F44 468 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 NAPGQ99747 312 aaPredicted RBP22.5■■□□□ 1.19
UPF1-207ENST00000599848 INO80BQ9C086 356 aaPredicted RBP22.5■■□□□ 1.19
UPF1-207ENST00000599848 SNX25Q9H3E2 840 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 ADRA2BP18089 450 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 TICAM2Q86XR7 235 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 STMN2Q93045 179 aa22.5■■□□□ 1.19
UPF1-207ENST00000599848 DDX25Q9UHL0 483 aaKnown RBP22.5■■□□□ 1.19
UPF1-207ENST00000599848 USP17L3A6NCW0 530 aa22.49■■□□□ 1.19
UPF1-207ENST00000599848 USP17L4A6NCW7 530 aa22.49■■□□□ 1.19
UPF1-207ENST00000599848 USP17L1Q7RTZ2 530 aa22.49■■□□□ 1.19
UPF1-207ENST00000599848 SDCCAG8Q86SQ7 713 aaPredicted RBP22.49■■□□□ 1.19
UPF1-207ENST00000599848 FOXP4Q8IVH2 680 aaPredicted RBP22.49■■□□□ 1.19
UPF1-207ENST00000599848 ZBTB7BO15156 539 aaPredicted RBP22.49■■□□□ 1.19
UPF1-207ENST00000599848 PDE6AP16499 860 aa22.49■■□□□ 1.19
UPF1-207ENST00000599848 PPP2R5DQ14738 602 aa22.49■■□□□ 1.19
UPF1-207ENST00000599848 GBP6Q6ZN66 633 aa22.49■■□□□ 1.19
UPF1-207ENST00000599848 G2E3Q7L622 706 aa22.49■■□□□ 1.19
UPF1-207ENST00000599848 ZNF274Q96GC6 653 aaPredicted RBP22.49■■□□□ 1.19
UPF1-207ENST00000599848 COA1Q9GZY4 146 aa22.49■■□□□ 1.19
UPF1-207ENST00000599848 ANAPC5Q9UJX4 755 aa22.49■■□□□ 1.19
UPF1-207ENST00000599848 CPSF3Q9UKF6 684 aaKnown RBP22.49■■□□□ 1.19
UPF1-207ENST00000599848 VPS16Q9H269 839 aa22.49■■□□□ 1.19
UPF1-207ENST00000599848 LZTFL1Q9NQ48 299 aa22.49■■□□□ 1.19
UPF1-207ENST00000599848 PLCB1Q9NQ66 1216 aa22.49■■□□□ 1.19
UPF1-207ENST00000599848 M0R2C6 588 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms