RNA–Protein interactions for RNA: ENST00000599138.5

VRK3-215, Transcript of vaccinia related kinase 3, humanhuman

TSL 4

Gene VRK3, Length 503 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-215ENST00000599138 U2AF1L4Q8WU68 220 aaKnown RBP11.45□□□□□ -0.58
VRK3-215ENST00000599138 ESR2Q92731 530 aa11.45□□□□□ -0.58
VRK3-215ENST00000599138 TTC14Q96N46 770 aa11.45□□□□□ -0.58
VRK3-215ENST00000599138 TMEM47Q9BQJ4 181 aa11.45□□□□□ -0.58
VRK3-215ENST00000599138 CRISPLD2Q9H0B8 497 aa11.45□□□□□ -0.58
VRK3-215ENST00000599138 SLC38A10Q9HBR0 1119 aa11.45□□□□□ -0.58
VRK3-215ENST00000599138 CWC22Q9HCG8 908 aaKnown RBP11.45□□□□□ -0.58
VRK3-215ENST00000599138 FLRT1Q9NZU1 646 aa11.45□□□□□ -0.58
VRK3-215ENST00000599138 SMCHD1A6NHR9 2005 aa11.45□□□□□ -0.58
VRK3-215ENST00000599138 TMEM232C9JQI7 657 aa11.44□□□□□ -0.58
VRK3-215ENST00000599138 COBLO75128 1261 aa11.44□□□□□ -0.58
VRK3-215ENST00000599138 FDX1P10109 184 aa11.44□□□□□ -0.58
VRK3-215ENST00000599138 PRKAR2AP13861 404 aaKnown RBP11.44□□□□□ -0.58
VRK3-215ENST00000599138 OAZ1P54368 228 aa11.44□□□□□ -0.58
VRK3-215ENST00000599138 PTH1RQ03431 593 aa11.44□□□□□ -0.58
VRK3-215ENST00000599138 CACNB2Q08289 660 aaPredicted RBP11.44□□□□□ -0.58
VRK3-215ENST00000599138 BMP2KLQ5H9B9 411 aa11.44□□□□□ -0.58
VRK3-215ENST00000599138 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.44□□□□□ -0.58
VRK3-215ENST00000599138 RASGRP2Q7LDG7 609 aa11.44□□□□□ -0.58
VRK3-215ENST00000599138 FAM160B2Q86V87 743 aa11.44□□□□□ -0.58
VRK3-215ENST00000599138 NCAPG2Q86XI2 1143 aa11.44□□□□□ -0.58
VRK3-215ENST00000599138 DGKHQ86XP1 1220 aa11.44□□□□□ -0.58
VRK3-215ENST00000599138 NPLOC4Q8TAT6 608 aa11.44□□□□□ -0.58
VRK3-215ENST00000599138 CHURC1Q8WUH1 139 aa11.44□□□□□ -0.58
VRK3-215ENST00000599138 DCAF4Q8WV16 495 aa11.44□□□□□ -0.58
VRK3-215ENST00000599138 ANKS1AQ92625 1134 aa11.44□□□□□ -0.58
VRK3-215ENST00000599138 KIFC2Q96AC6 838 aa11.44□□□□□ -0.58
VRK3-215ENST00000599138 TEX13BQ9BXU2 312 aa11.44□□□□□ -0.58
VRK3-215ENST00000599138 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.44□□□□□ -0.58
VRK3-215ENST00000599138 ZBED4O75132 1171 aa11.43□□□□□ -0.58
VRK3-215ENST00000599138 KDM4AO75164 1064 aa11.43□□□□□ -0.58
VRK3-215ENST00000599138 SNHG28P0DPA3 235 aa11.43□□□□□ -0.58
VRK3-215ENST00000599138 FCER1AP12319 257 aa11.43□□□□□ -0.58
VRK3-215ENST00000599138 STAT2P52630 851 aa11.43□□□□□ -0.58
VRK3-215ENST00000599138 OLFML2BQ68BL8 750 aa11.43□□□□□ -0.58
VRK3-215ENST00000599138 SNRNP48Q6IEG0 339 aaKnown RBP11.43□□□□□ -0.58
VRK3-215ENST00000599138 BTNL9Q6UXG8 535 aa11.43□□□□□ -0.58
VRK3-215ENST00000599138 KCTD1Q719H9 257 aa11.43□□□□□ -0.58
VRK3-215ENST00000599138 MAP4K1Q92918 833 aa11.43□□□□□ -0.58
VRK3-215ENST00000599138 DEFB118Q96PH6 123 aa11.43□□□□□ -0.58
VRK3-215ENST00000599138 HMX1Q9NP08 348 aaPredicted RBP11.43□□□□□ -0.58
VRK3-215ENST00000599138 RIPK3Q9Y572 518 aa11.43□□□□□ -0.58
VRK3-215ENST00000599138 PLXNA1Q9UIW2 1896 aa11.42□□□□□ -0.58
VRK3-215ENST00000599138 ZNF536O15090 1300 aa11.42□□□□□ -0.58
VRK3-215ENST00000599138 B4E1Z4 1266 aa11.42□□□□□ -0.58
VRK3-215ENST00000599138 CYP21A2P08686 494 aa11.42□□□□□ -0.58
VRK3-215ENST00000599138 PDHBP11177 359 aa11.42□□□□□ -0.58
VRK3-215ENST00000599138 CCDC178Q5BJE1 867 aa11.42□□□□□ -0.58
VRK3-215ENST00000599138 MFSD14CQ5VZR4 134 aa11.42□□□□□ -0.58
VRK3-215ENST00000599138 DPP9Q86TI2 863 aa11.42□□□□□ -0.58
VRK3-215ENST00000599138 CCDC136Q96JN2 1154 aa11.42□□□□□ -0.58
VRK3-215ENST00000599138 KRT23Q9C075 422 aa11.42□□□□□ -0.58
VRK3-215ENST00000599138 CNNM2Q9H8M5 875 aa11.42□□□□□ -0.58
VRK3-215ENST00000599138 RAVER2Q9HCJ3 691 aaKnown RBP11.42□□□□□ -0.58
VRK3-215ENST00000599138 ZSWIM5Q9P217 1185 aa11.42□□□□□ -0.58
VRK3-215ENST00000599138 U3KPZ7 1027 aaPredicted RBP11.42□□□□□ -0.58
VRK3-215ENST00000599138 CCND3P30281 292 aaPredicted RBP11.41□□□□□ -0.58
VRK3-215ENST00000599138 ZNF543Q08ER8 600 aa11.41□□□□□ -0.58
VRK3-215ENST00000599138 ZNF792Q3KQV3 632 aa11.41□□□□□ -0.58
VRK3-215ENST00000599138 LHX8Q68G74 356 aa11.41□□□□□ -0.58
VRK3-215ENST00000599138 TTBK2Q6IQ55 1244 aa11.41□□□□□ -0.58
VRK3-215ENST00000599138 IQCA1Q86XH1 822 aa11.41□□□□□ -0.58
VRK3-215ENST00000599138 CPXCR1Q8N123 301 aa11.41□□□□□ -0.58
VRK3-215ENST00000599138 ENAHQ8N8S7 591 aaPredicted RBP11.41□□□□□ -0.58
VRK3-215ENST00000599138 CHST13Q8NET6 341 aa11.41□□□□□ -0.58
VRK3-215ENST00000599138 MAML3Q96JK9 1138 aa11.41□□□□□ -0.58
VRK3-215ENST00000599138 ZSCAN10Q96SZ4 725 aaPredicted RBP11.41□□□□□ -0.58
VRK3-215ENST00000599138 MMP19Q99542 508 aa11.41□□□□□ -0.58
VRK3-215ENST00000599138 ZKSCAN3Q9BRR0 538 aa11.41□□□□□ -0.58
VRK3-215ENST00000599138 ESYT1Q9BSJ8 1104 aa11.41□□□□□ -0.58
VRK3-215ENST00000599138 LSG1Q9H089 658 aaKnown RBP11.41□□□□□ -0.58
VRK3-215ENST00000599138 SLC5A4Q9NY91 659 aa11.41□□□□□ -0.58
VRK3-215ENST00000599138 OGDHLQ9ULD0 1010 aa11.41□□□□□ -0.58
VRK3-215ENST00000599138 PRR12Q9ULL5 1215 aa11.41□□□□□ -0.58
VRK3-215ENST00000599138 DIS3Q9Y2L1 958 aaKnown RBP11.41□□□□□ -0.58
VRK3-215ENST00000599138 TAF6LQ9Y6J9 622 aa11.41□□□□□ -0.58
VRK3-215ENST00000599138 DNAJC25-GNG10A0A024R161 153 aa11.4□□□□□ -0.58
VRK3-215ENST00000599138 TFRCP02786 760 aaKnown RBP11.4□□□□□ -0.58
VRK3-215ENST00000599138 PGK2P07205 417 aa11.4□□□□□ -0.58
VRK3-215ENST00000599138 CYBAP13498 195 aa11.4□□□□□ -0.58
VRK3-215ENST00000599138 CYP2C19P33261 490 aa11.4□□□□□ -0.58
VRK3-215ENST00000599138 MNX1P50219 401 aaPredicted RBP11.4□□□□□ -0.58
VRK3-215ENST00000599138 KCTD2Q14681 263 aa11.4□□□□□ -0.58
VRK3-215ENST00000599138 SEC23AQ15436 765 aa11.4□□□□□ -0.58
VRK3-215ENST00000599138 CCDC96Q2M329 555 aa11.4□□□□□ -0.58
VRK3-215ENST00000599138 ANKLE1Q8NAG6 615 aa11.4□□□□□ -0.58
VRK3-215ENST00000599138 TRPV1Q8NER1 839 aa11.4□□□□□ -0.58
VRK3-215ENST00000599138 CHMP4CQ96CF2 233 aa11.4□□□□□ -0.58
VRK3-215ENST00000599138 RANBP17Q9H2T7 1088 aaKnown RBP11.4□□□□□ -0.58
VRK3-215ENST00000599138 FBXO40Q9UH90 709 aa11.4□□□□□ -0.58
VRK3-215ENST00000599138 TRIOBPQ9H2D6 2365 aa11.4□□□□□ -0.58
VRK3-215ENST00000599138 TNKSO95271 1327 aa11.39□□□□□ -0.59
VRK3-215ENST00000599138 FARP2O94887 1054 aaPredicted RBP11.39□□□□□ -0.59
VRK3-215ENST00000599138 NEFLP07196 543 aa11.39□□□□□ -0.59
VRK3-215ENST00000599138 IKQ13123 557 aaPredicted RBP11.39□□□□□ -0.59
VRK3-215ENST00000599138 TKFCQ3LXA3 575 aa11.39□□□□□ -0.59
VRK3-215ENST00000599138 SYDE2Q5VT97 1194 aa11.39□□□□□ -0.59
VRK3-215ENST00000599138 ERICH6BQ5W0A0 696 aa11.39□□□□□ -0.59
VRK3-215ENST00000599138 STOX1Q6ZVD7 989 aa11.39□□□□□ -0.59
VRK3-215ENST00000599138 CYB5R4Q7L1T6 521 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms