RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 FAM160B2Q86V87 743 aa19.01■□□□□ 0.63
TRIM28-213ENST00000598355 CCAR1Q8IX12 1150 aaKnown RBP19.01■□□□□ 0.63
TRIM28-213ENST00000598355 TRMT44Q8IYL2 757 aaKnown RBP19.01■□□□□ 0.63
TRIM28-213ENST00000598355 TEX13BQ9BXU2 312 aa19.01■□□□□ 0.63
TRIM28-213ENST00000598355 KRT23Q9C075 422 aa19.01■□□□□ 0.63
TRIM28-213ENST00000598355 PAK6Q9NQU5 681 aaPredicted RBP19.01■□□□□ 0.63
TRIM28-213ENST00000598355 ZSWIM5Q9P217 1185 aa19.01■□□□□ 0.63
TRIM28-213ENST00000598355 IVNS1ABPQ9Y6Y0 642 aa19.01■□□□□ 0.63
TRIM28-213ENST00000598355 MYH6P13533 1939 aa19.01■□□□□ 0.63
TRIM28-213ENST00000598355 PDHBP11177 359 aa19■□□□□ 0.63
TRIM28-213ENST00000598355 CCL5P13501 91 aa19■□□□□ 0.63
TRIM28-213ENST00000598355 CYP2B6P20813 491 aa19■□□□□ 0.63
TRIM28-213ENST00000598355 MCCP23508 829 aa19■□□□□ 0.63
TRIM28-213ENST00000598355 OAZ1P54368 228 aa19■□□□□ 0.63
TRIM28-213ENST00000598355 CCDC178Q5BJE1 867 aa19■□□□□ 0.63
TRIM28-213ENST00000598355 BTNL9Q6UXG8 535 aa19■□□□□ 0.63
TRIM28-213ENST00000598355 IQCA1Q86XH1 822 aa19■□□□□ 0.63
TRIM28-213ENST00000598355 SHISA4Q96DD7 197 aa19■□□□□ 0.63
TRIM28-213ENST00000598355 PPP4R2Q9NY27 417 aa19■□□□□ 0.63
TRIM28-213ENST00000598355 RBM8AQ9Y5S9 174 aaKnown RBP19■□□□□ 0.63
TRIM28-213ENST00000598355 TAF6LQ9Y6J9 622 aa19■□□□□ 0.63
TRIM28-213ENST00000598355 TMEM232C9JQI7 657 aa18.99■□□□□ 0.63
TRIM28-213ENST00000598355 GJB1P08034 283 aa18.99■□□□□ 0.63
TRIM28-213ENST00000598355 ADORA2AP29274 412 aa18.99■□□□□ 0.63
TRIM28-213ENST00000598355 STAT3P40763 770 aa18.99■□□□□ 0.63
TRIM28-213ENST00000598355 PLS1Q14651 629 aa18.99■□□□□ 0.63
TRIM28-213ENST00000598355 ENAHQ8N8S7 591 aaPredicted RBP18.99■□□□□ 0.63
TRIM28-213ENST00000598355 CHURC1Q8WUH1 139 aa18.99■□□□□ 0.63
TRIM28-213ENST00000598355 TMEM106CQ9BVX2 250 aa18.99■□□□□ 0.63
TRIM28-213ENST00000598355 UNC93B1Q9H1C4 597 aa18.99■□□□□ 0.63
TRIM28-213ENST00000598355 MCM3APO60318 1980 aa18.99■□□□□ 0.63
TRIM28-213ENST00000598355 TNKSO95271 1327 aa18.99■□□□□ 0.63
TRIM28-213ENST00000598355 ZKSCAN1P17029 563 aaPredicted RBP18.98■□□□□ 0.63
TRIM28-213ENST00000598355 GJA8P48165 433 aa18.98■□□□□ 0.63
TRIM28-213ENST00000598355 SEC23AQ15436 765 aa18.98■□□□□ 0.63
TRIM28-213ENST00000598355 CCL14Q16627 93 aa18.98■□□□□ 0.63
TRIM28-213ENST00000598355 WDR78Q5VTH9 848 aa18.98■□□□□ 0.63
TRIM28-213ENST00000598355 SAMD1Q6SPF0 538 aaPredicted RBP18.98■□□□□ 0.63
TRIM28-213ENST00000598355 STOX1Q6ZVD7 989 aa18.98■□□□□ 0.63
TRIM28-213ENST00000598355 KCTD1Q719H9 257 aa18.98■□□□□ 0.63
TRIM28-213ENST00000598355 NCAPG2Q86XI2 1143 aa18.98■□□□□ 0.63
TRIM28-213ENST00000598355 NPLOC4Q8TAT6 608 aa18.98■□□□□ 0.63
TRIM28-213ENST00000598355 KIFC2Q96AC6 838 aa18.98■□□□□ 0.63
TRIM28-213ENST00000598355 ZSCAN10Q96SZ4 725 aaPredicted RBP18.98■□□□□ 0.63
TRIM28-213ENST00000598355 ZKSCAN3Q9BRR0 538 aa18.98■□□□□ 0.63
TRIM28-213ENST00000598355 FLRT1Q9NZU1 646 aa18.98■□□□□ 0.63
TRIM28-213ENST00000598355 ZNF536O15090 1300 aa18.98■□□□□ 0.63
TRIM28-213ENST00000598355 CDC45O75419 566 aa18.97■□□□□ 0.63
TRIM28-213ENST00000598355 EN2P19622 333 aaPredicted RBP18.97■□□□□ 0.63
TRIM28-213ENST00000598355 MLLT1Q03111 559 aaPredicted RBP18.97■□□□□ 0.63
TRIM28-213ENST00000598355 ZNF543Q08ER8 600 aa18.97■□□□□ 0.63
TRIM28-213ENST00000598355 TRIM32Q13049 653 aa18.97■□□□□ 0.63
TRIM28-213ENST00000598355 SNRNP48Q6IEG0 339 aaKnown RBP18.97■□□□□ 0.63
TRIM28-213ENST00000598355 CYB5R4Q7L1T6 521 aa18.97■□□□□ 0.63
TRIM28-213ENST00000598355 CWC22Q9HCG8 908 aaKnown RBP18.97■□□□□ 0.63
TRIM28-213ENST00000598355 BIN2Q9UBW5 565 aaPredicted RBP18.97■□□□□ 0.63
TRIM28-213ENST00000598355 RIPK3Q9Y572 518 aa18.97■□□□□ 0.63
TRIM28-213ENST00000598355 LRRC37A2A6NM11 1700 aa18.97■□□□□ 0.63
TRIM28-213ENST00000598355 E7EWF7 191 aa18.96■□□□□ 0.63
TRIM28-213ENST00000598355 COBLO75128 1261 aa18.96■□□□□ 0.63
TRIM28-213ENST00000598355 ZBED4O75132 1171 aa18.96■□□□□ 0.63
TRIM28-213ENST00000598355 NECTIN1Q15223 517 aa18.96■□□□□ 0.63
TRIM28-213ENST00000598355 OLFML2BQ68BL8 750 aa18.96■□□□□ 0.63
TRIM28-213ENST00000598355 PNMA1Q8ND90 353 aa18.96■□□□□ 0.63
TRIM28-213ENST00000598355 RNF208Q9H0X6 261 aa18.96■□□□□ 0.63
TRIM28-213ENST00000598355 PRR12Q9ULL5 1215 aa18.96■□□□□ 0.63
TRIM28-213ENST00000598355 RPTORQ8N122 1335 aa18.96■□□□□ 0.63
TRIM28-213ENST00000598355 MYCP01106 439 aaPredicted RBP18.95■□□□□ 0.62
TRIM28-213ENST00000598355 FCER1AP12319 257 aa18.95■□□□□ 0.62
TRIM28-213ENST00000598355 CAPN2P17655 700 aa18.95■□□□□ 0.62
TRIM28-213ENST00000598355 CCDC96Q2M329 555 aa18.95■□□□□ 0.62
TRIM28-213ENST00000598355 KIAA1211Q6ZU35 1233 aa18.95■□□□□ 0.62
TRIM28-213ENST00000598355 UBE2Q1Q7Z7E8 422 aa18.95■□□□□ 0.62
TRIM28-213ENST00000598355 MB21D2Q8IYB1 491 aaPredicted RBP18.95■□□□□ 0.62
TRIM28-213ENST00000598355 CRISPLD2Q9H0B8 497 aa18.95■□□□□ 0.62
TRIM28-213ENST00000598355 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.95■□□□□ 0.621e-5■■■□□ 18
TRIM28-213ENST00000598355 RANBP17Q9H2T7 1088 aaKnown RBP18.95■□□□□ 0.62
TRIM28-213ENST00000598355 RAVER2Q9HCJ3 691 aaKnown RBP18.95■□□□□ 0.62
TRIM28-213ENST00000598355 ALPK3Q96L96 1907 aa18.94■□□□□ 0.62
TRIM28-213ENST00000598355 DNAJC25-GNG10A0A024R161 153 aa18.94■□□□□ 0.62
TRIM28-213ENST00000598355 PRKAR2AP13861 404 aaKnown RBP18.94■□□□□ 0.62
TRIM28-213ENST00000598355 CACNB2Q08289 660 aaPredicted RBP18.94■□□□□ 0.62
TRIM28-213ENST00000598355 TRDNQ13061 729 aa18.94■□□□□ 0.62
TRIM28-213ENST00000598355 GPATCH4Q5T3I0 446 aaKnown RBP18.94■□□□□ 0.62
TRIM28-213ENST00000598355 TTBK2Q6IQ55 1244 aa18.94■□□□□ 0.62
TRIM28-213ENST00000598355 NCOA7Q8NI08 942 aa18.94■□□□□ 0.62
TRIM28-213ENST00000598355 U2AF1L4Q8WU68 220 aaKnown RBP18.94■□□□□ 0.62
TRIM28-213ENST00000598355 MMP19Q99542 508 aa18.94■□□□□ 0.62
TRIM28-213ENST00000598355 UBAC1Q9BSL1 405 aa18.94■□□□□ 0.62
TRIM28-213ENST00000598355 DIS3Q9Y2L1 958 aaKnown RBP18.94■□□□□ 0.62
TRIM28-213ENST00000598355 SLC27A2O14975 620 aa18.93■□□□□ 0.62
TRIM28-213ENST00000598355 SGPL1O95470 568 aa18.93■□□□□ 0.62
TRIM28-213ENST00000598355 ANTXR2P58335 489 aa18.93■□□□□ 0.62
TRIM28-213ENST00000598355 ZNF792Q3KQV3 632 aa18.93■□□□□ 0.62
TRIM28-213ENST00000598355 SYDE2Q5VT97 1194 aa18.93■□□□□ 0.62
TRIM28-213ENST00000598355 CPXCR1Q8N123 301 aa18.93■□□□□ 0.62
TRIM28-213ENST00000598355 CHST13Q8NET6 341 aa18.93■□□□□ 0.62
TRIM28-213ENST00000598355 MAML3Q96JK9 1138 aa18.93■□□□□ 0.62
TRIM28-213ENST00000598355 HMX1Q9NP08 348 aaPredicted RBP18.93■□□□□ 0.62
TRIM28-213ENST00000598355 ANO2Q9NQ90 1003 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms