RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 FLOT1O75955 427 aa12.37□□□□□ -0.43
LIG1-210ENST00000596332 CD2BP2O95400 341 aaKnown RBP12.37□□□□□ -0.43
LIG1-210ENST00000596332 OSBPP22059 807 aa12.37□□□□□ -0.43
LIG1-210ENST00000596332 PDIA3P30101 505 aaKnown RBP12.37□□□□□ -0.43
LIG1-210ENST00000596332 CDC27P30260 824 aa12.37□□□□□ -0.43
LIG1-210ENST00000596332 AK2P54819 239 aa12.37□□□□□ -0.43
LIG1-210ENST00000596332 SNAP25P60880 206 aa12.37□□□□□ -0.43
LIG1-210ENST00000596332 PABPC4Q13310 644 aaKnown RBP eCLIP12.37□□□□□ -0.43
LIG1-210ENST00000596332 PRPF38AQ8NAV1 312 aaKnown RBP12.37□□□□□ -0.43
LIG1-210ENST00000596332 ZNF296Q8WUU4 475 aaPredicted RBP12.37□□□□□ -0.43
LIG1-210ENST00000596332 PARK7Q99497 189 aaKnown RBP12.37□□□□□ -0.43
LIG1-210ENST00000596332 SLF1Q9BQI6 1058 aa12.37□□□□□ -0.43
LIG1-210ENST00000596332 TANGO6Q9C0B7 1094 aa12.37□□□□□ -0.43
LIG1-210ENST00000596332 ARHGAP39Q9C0H5 1083 aa12.37□□□□□ -0.43
LIG1-210ENST00000596332 RIOX1Q9H6W3 641 aa12.37□□□□□ -0.43
LIG1-210ENST00000596332 JMJD4Q9H9V9 463 aa12.37□□□□□ -0.43
LIG1-210ENST00000596332 SLC38A10Q9HBR0 1119 aa12.37□□□□□ -0.43
LIG1-210ENST00000596332 PDRG1Q9NUG6 133 aa12.37□□□□□ -0.43
LIG1-210ENST00000596332 FEM1BQ9UK73 627 aa12.37□□□□□ -0.43
LIG1-210ENST00000596332 TPCN1Q9ULQ1 816 aa12.37□□□□□ -0.43
LIG1-210ENST00000596332 RABGAP1Q9Y3P9 1069 aa12.37□□□□□ -0.43
LIG1-210ENST00000596332 RIPK3Q9Y572 518 aa12.37□□□□□ -0.43
LIG1-210ENST00000596332 NID2Q14112 1375 aa12.36□□□□□ -0.43
LIG1-210ENST00000596332 ATP2A1O14983 1001 aa12.36□□□□□ -0.43
LIG1-210ENST00000596332 RAD21O60216 631 aa12.36□□□□□ -0.43
LIG1-210ENST00000596332 DDAH1O94760 285 aa12.36□□□□□ -0.43
LIG1-210ENST00000596332 PLEKHA8P1O95397 391 aa12.36□□□□□ -0.43
LIG1-210ENST00000596332 GCLCP48506 637 aaPredicted RBP12.36□□□□□ -0.43
LIG1-210ENST00000596332 IRX3P78415 501 aaPredicted RBP12.36□□□□□ -0.43
LIG1-210ENST00000596332 ST3GAL1Q11201 340 aa12.36□□□□□ -0.43
LIG1-210ENST00000596332 SART3Q15020 963 aaKnown RBP12.36□□□□□ -0.43
LIG1-210ENST00000596332 NTRK3Q16288 839 aa12.36□□□□□ -0.43
LIG1-210ENST00000596332 FAM110CQ1W6H9 321 aa12.36□□□□□ -0.43
LIG1-210ENST00000596332 ADGRF4Q8IZF3 695 aa12.36□□□□□ -0.43
LIG1-210ENST00000596332 SRBD1Q8N5C6 995 aaKnown RBP12.36□□□□□ -0.43
LIG1-210ENST00000596332 ANKRD13CQ8N6S4 541 aa12.36□□□□□ -0.43
LIG1-210ENST00000596332 FANCBQ8NB91 859 aa12.36□□□□□ -0.43
LIG1-210ENST00000596332 PORCNQ9H237 461 aa12.36□□□□□ -0.43
LIG1-210ENST00000596332 RANBP17Q9H2T7 1088 aaKnown RBP12.36□□□□□ -0.43
LIG1-210ENST00000596332 FOXD4L1Q9NU39 408 aa12.36□□□□□ -0.43
LIG1-210ENST00000596332 KLF18A0A0U1RQI7 1052 aa12.35□□□□□ -0.43
LIG1-210ENST00000596332 ERICH2A1L162 156 aa12.35□□□□□ -0.43
LIG1-210ENST00000596332 KLRF2D3W0D1 207 aa12.35□□□□□ -0.43
LIG1-210ENST00000596332 PPP1R11O60927 126 aaPredicted RBP12.35□□□□□ -0.43
LIG1-210ENST00000596332 LARGE1O95461 756 aa12.35□□□□□ -0.43
LIG1-210ENST00000596332 TAL1P17542 331 aaPredicted RBP12.35□□□□□ -0.43
LIG1-210ENST00000596332 ADD1P35611 737 aaKnown RBP12.35□□□□□ -0.43
LIG1-210ENST00000596332 NEK4P51957 841 aa12.35□□□□□ -0.43
LIG1-210ENST00000596332 STAT2P52630 851 aa12.35□□□□□ -0.43
LIG1-210ENST00000596332 LBX1P52954 281 aa12.35□□□□□ -0.43
LIG1-210ENST00000596332 ERVK-9P63128 1117 aa12.35□□□□□ -0.43
LIG1-210ENST00000596332 ERVK-24P63145 666 aa12.35□□□□□ -0.43
LIG1-210ENST00000596332 ASPRV1Q53RT3 343 aa12.35□□□□□ -0.43
LIG1-210ENST00000596332 GPATCH4Q5T3I0 446 aaKnown RBP12.35□□□□□ -0.43
LIG1-210ENST00000596332 SYDE2Q5VT97 1194 aa12.35□□□□□ -0.43
LIG1-210ENST00000596332 FAM160B2Q86V87 743 aa12.35□□□□□ -0.43
LIG1-210ENST00000596332 CMTR1Q8N1G2 835 aaKnown RBP12.35□□□□□ -0.43
LIG1-210ENST00000596332 KIFC2Q96AC6 838 aa12.35□□□□□ -0.43
LIG1-210ENST00000596332 MOV10L1Q9BXT6 1211 aaKnown RBP12.35□□□□□ -0.43
LIG1-210ENST00000596332 PNMA3Q9UL41 463 aa12.35□□□□□ -0.43
LIG1-210ENST00000596332 ZSWIM8A7E2V4 1837 aa12.34□□□□□ -0.43
LIG1-210ENST00000596332 CCDC69A6NI79 296 aa12.34□□□□□ -0.43
LIG1-210ENST00000596332 PARP1P09874 1014 aaKnown RBP12.34□□□□□ -0.43
LIG1-210ENST00000596332 RCAN1P53805 252 aa12.34□□□□□ -0.43
LIG1-210ENST00000596332 LACTBP83111 547 aaPredicted RBP12.34□□□□□ -0.43
LIG1-210ENST00000596332 CCDC96Q2M329 555 aa12.34□□□□□ -0.43
LIG1-210ENST00000596332 CATIPQ7Z7H3 387 aa12.34□□□□□ -0.43
LIG1-210ENST00000596332 CCDC144CPQ8IYA2 1237 aa12.34□□□□□ -0.43
LIG1-210ENST00000596332 CHURC1Q8WUH1 139 aa12.34□□□□□ -0.43
LIG1-210ENST00000596332 ZNF274Q96GC6 653 aaPredicted RBP12.34□□□□□ -0.43
LIG1-210ENST00000596332 TRIM47Q96LD4 638 aa12.34□□□□□ -0.43
LIG1-210ENST00000596332 AGBL1Q96MI9 1066 aa12.34□□□□□ -0.43
LIG1-210ENST00000596332 GJD2Q9UKL4 321 aa12.34□□□□□ -0.43
LIG1-210ENST00000596332 SLC12A7Q9Y666 1083 aa12.34□□□□□ -0.43
LIG1-210ENST00000596332 DTNBO60941 627 aa12.33□□□□□ -0.44
LIG1-210ENST00000596332 CTDNEP1O95476 244 aa12.33□□□□□ -0.44
LIG1-210ENST00000596332 SMARCA1P28370 1054 aa12.33□□□□□ -0.44
LIG1-210ENST00000596332 SP3Q02447 781 aa12.33□□□□□ -0.44
LIG1-210ENST00000596332 ME3Q16798 604 aa12.33□□□□□ -0.44
LIG1-210ENST00000596332 NFXL1Q6ZNB6 911 aa12.33□□□□□ -0.44
LIG1-210ENST00000596332 TMTC3Q6ZXV5 915 aa12.33□□□□□ -0.44
LIG1-210ENST00000596332 RIOX2Q8IUF8 465 aa12.33□□□□□ -0.44
LIG1-210ENST00000596332 MB21D1Q8N884 522 aa12.33□□□□□ -0.44
LIG1-210ENST00000596332 GPRC5AQ8NFJ5 357 aa12.33□□□□□ -0.44
LIG1-210ENST00000596332 SMCR8Q8TEV9 937 aaPredicted RBP12.33□□□□□ -0.44
LIG1-210ENST00000596332 NUP133Q8WUM0 1156 aa12.33□□□□□ -0.44
LIG1-210ENST00000596332 USP6NLQ92738 828 aa12.33□□□□□ -0.44
LIG1-210ENST00000596332 SHISA4Q96DD7 197 aa12.33□□□□□ -0.44
LIG1-210ENST00000596332 PAGR1Q9BTK6 254 aa12.33□□□□□ -0.44
LIG1-210ENST00000596332 SPATC1LQ9H0A9 340 aa12.33□□□□□ -0.44
LIG1-210ENST00000596332 EFCC1Q9HA90 598 aa12.33□□□□□ -0.44
LIG1-210ENST00000596332 NCOA5Q9HCD5 579 aaKnown RBP12.33□□□□□ -0.44
LIG1-210ENST00000596332 RAVER2Q9HCJ3 691 aaKnown RBP12.33□□□□□ -0.44
LIG1-210ENST00000596332 SMCHD1A6NHR9 2005 aa12.32□□□□□ -0.44
LIG1-210ENST00000596332 OPLAHO14841 1288 aa12.32□□□□□ -0.44
LIG1-210ENST00000596332 ZBTB43O43298 467 aa12.32□□□□□ -0.44
LIG1-210ENST00000596332 PFKFB2O60825 505 aa12.32□□□□□ -0.44
LIG1-210ENST00000596332 FKTNO75072 461 aa12.32□□□□□ -0.44
LIG1-210ENST00000596332 IGHA2P01877 340 aa12.32□□□□□ -0.44
LIG1-210ENST00000596332 STAT3P40763 770 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms