RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-210ENST00000595874 ZKSCAN3Q9BRR0 538 aa12.23□□□□□ -0.45
SHKBP1-210ENST00000595874 SENP6Q9GZR1 1112 aaPredicted RBP12.23□□□□□ -0.45
SHKBP1-210ENST00000595874 HELLSQ9NRZ9 838 aa12.23□□□□□ -0.45
SHKBP1-210ENST00000595874 DDX20Q9UHI6 824 aaKnown RBP12.23□□□□□ -0.45
SHKBP1-210ENST00000595874 OGDHLQ9ULD0 1010 aa12.23□□□□□ -0.45
SHKBP1-210ENST00000595874 NR2E3Q9Y5X4 410 aa12.23□□□□□ -0.45
SHKBP1-210ENST00000595874 DDX49Q9Y6V7 483 aaKnown RBP12.23□□□□□ -0.45
SHKBP1-210ENST00000595874 ZBED4O75132 1171 aa12.22□□□□□ -0.45
SHKBP1-210ENST00000595874 FGAP02671 866 aa12.22□□□□□ -0.45
SHKBP1-210ENST00000595874 HSPD1P10809 573 aaKnown RBP12.22□□□□□ -0.45
SHKBP1-210ENST00000595874 BMP3P12645 472 aa12.22□□□□□ -0.45
SHKBP1-210ENST00000595874 PDE4AP27815 886 aa12.22□□□□□ -0.45
SHKBP1-210ENST00000595874 KCTD2Q14681 263 aa12.22□□□□□ -0.45
SHKBP1-210ENST00000595874 LRRC26Q2I0M4 334 aa12.22□□□□□ -0.45
SHKBP1-210ENST00000595874 CCDC96Q2M329 555 aa12.22□□□□□ -0.45
SHKBP1-210ENST00000595874 SHCBP1Q8NEM2 672 aa12.22□□□□□ -0.45
SHKBP1-210ENST00000595874 FERMT2Q96AC1 680 aa12.22□□□□□ -0.45
SHKBP1-210ENST00000595874 MAML3Q96JK9 1138 aa12.22□□□□□ -0.45
SHKBP1-210ENST00000595874 MROH8Q9H579 483 aa12.22□□□□□ -0.45
SHKBP1-210ENST00000595874 ZNF287Q9HBT7 754 aa12.22□□□□□ -0.45
SHKBP1-210ENST00000595874 GPCPD1Q9NPB8 672 aa12.22□□□□□ -0.45
SHKBP1-210ENST00000595874 IL17RBQ9NRM6 502 aa12.22□□□□□ -0.45
SHKBP1-210ENST00000595874 ZNF214Q9UL59 606 aaPredicted RBP12.22□□□□□ -0.45
SHKBP1-210ENST00000595874 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.22□□□□□ -0.45
SHKBP1-210ENST00000595874 PLXNA1Q9UIW2 1896 aa12.22□□□□□ -0.45
SHKBP1-210ENST00000595874 CCDC171Q6TFL3 1326 aa12.21□□□□□ -0.45
SHKBP1-210ENST00000595874 CYBAP13498 195 aa12.21□□□□□ -0.45
SHKBP1-210ENST00000595874 SLC16A2P36021 539 aa12.21□□□□□ -0.45
SHKBP1-210ENST00000595874 IRX5P78411 483 aaPredicted RBP12.21□□□□□ -0.45
SHKBP1-210ENST00000595874 TTBK2Q6IQ55 1244 aa12.21□□□□□ -0.45
SHKBP1-210ENST00000595874 RIOX2Q8IUF8 465 aa12.21□□□□□ -0.45
SHKBP1-210ENST00000595874 TBC1D10CQ8IV04 446 aa12.21□□□□□ -0.45
SHKBP1-210ENST00000595874 DDX11Q96FC9 970 aa12.21□□□□□ -0.45
SHKBP1-210ENST00000595874 AGBL1Q96MI9 1066 aa12.21□□□□□ -0.45
SHKBP1-210ENST00000595874 DIAPH3Q9NSV4 1193 aa12.21□□□□□ -0.45
SHKBP1-210ENST00000595874 SLC25A27O95847 323 aa12.2□□□□□ -0.46
SHKBP1-210ENST00000595874 HOXC6P09630 235 aa12.2□□□□□ -0.46
SHKBP1-210ENST00000595874 SLC1A4P43007 532 aa12.2□□□□□ -0.46
SHKBP1-210ENST00000595874 SKAP1Q86WV1 359 aa12.2□□□□□ -0.46
SHKBP1-210ENST00000595874 PRPF38AQ8NAV1 312 aaKnown RBP12.2□□□□□ -0.46
SHKBP1-210ENST00000595874 FEM1BQ9UK73 627 aa12.2□□□□□ -0.46
SHKBP1-210ENST00000595874 ZHX1Q9UKY1 873 aaPredicted RBP12.2□□□□□ -0.46
SHKBP1-210ENST00000595874 ADAMTS5Q9UNA0 930 aa12.2□□□□□ -0.46
SHKBP1-210ENST00000595874 ZNF236Q9UL36 1845 aa12.2□□□□□ -0.46
SHKBP1-210ENST00000595874 NEDD4P46934 1319 aa12.19□□□□□ -0.46
SHKBP1-210ENST00000595874 STRNO43815 780 aa12.19□□□□□ -0.46
SHKBP1-210ENST00000595874 ALAS1P13196 640 aa12.19□□□□□ -0.46
SHKBP1-210ENST00000595874 FXR1P51114 621 aaKnown RBP eCLIP12.19□□□□□ -0.46
SHKBP1-210ENST00000595874 MDM2Q00987 491 aaPredicted RBP12.19□□□□□ -0.46
SHKBP1-210ENST00000595874 CNTN2Q02246 1040 aa12.19□□□□□ -0.46
SHKBP1-210ENST00000595874 ANKLE1Q8NAG6 615 aa12.19□□□□□ -0.46
SHKBP1-210ENST00000595874 GMCL1P1Q8NEA9 526 aa12.19□□□□□ -0.46
SHKBP1-210ENST00000595874 MKL1Q969V6 931 aa12.19□□□□□ -0.46
SHKBP1-210ENST00000595874 PURBQ96QR8 312 aaKnown RBP12.19□□□□□ -0.46
SHKBP1-210ENST00000595874 TEX13BQ9BXU2 312 aa12.19□□□□□ -0.46
SHKBP1-210ENST00000595874 IL25Q9H293 177 aa12.19□□□□□ -0.46
SHKBP1-210ENST00000595874 SLC5A4Q9NY91 659 aa12.19□□□□□ -0.46
SHKBP1-210ENST00000595874 ATP11BQ9Y2G3 1177 aa12.19□□□□□ -0.46
SHKBP1-210ENST00000595874 PLIN4Q96Q06 1357 aa12.18□□□□□ -0.46
SHKBP1-210ENST00000595874 PGK1P00558 417 aa12.18□□□□□ -0.46
SHKBP1-210ENST00000595874 GSPT1P15170 499 aaKnown RBP12.18□□□□□ -0.46
SHKBP1-210ENST00000595874 PTGS1P23219 599 aa12.18□□□□□ -0.46
SHKBP1-210ENST00000595874 ZNF792Q3KQV3 632 aa12.18□□□□□ -0.46
SHKBP1-210ENST00000595874 OLFML2BQ68BL8 750 aa12.18□□□□□ -0.46
SHKBP1-210ENST00000595874 ANKRD35Q8N283 1001 aa12.18□□□□□ -0.46
SHKBP1-210ENST00000595874 TMEM47Q9BQJ4 181 aa12.18□□□□□ -0.46
SHKBP1-210ENST00000595874 CPVLQ9H3G5 476 aa12.18□□□□□ -0.46
SHKBP1-210ENST00000595874 SLC38A10Q9HBR0 1119 aa12.18□□□□□ -0.46
SHKBP1-210ENST00000595874 KBTBD13C9JR72 458 aa12.17□□□□□ -0.46
SHKBP1-210ENST00000595874 GOLGA8HP0CJ92 632 aa12.17□□□□□ -0.46
SHKBP1-210ENST00000595874 ADCYAP1R1P41586 468 aa12.17□□□□□ -0.46
SHKBP1-210ENST00000595874 MAGEA10P43363 369 aaPredicted RBP12.17□□□□□ -0.46
SHKBP1-210ENST00000595874 STAT2P52630 851 aa12.17□□□□□ -0.46
SHKBP1-210ENST00000595874 ALX1Q15699 326 aa12.17□□□□□ -0.46
SHKBP1-210ENST00000595874 MUM1L1Q5H9M0 696 aa12.17□□□□□ -0.46
SHKBP1-210ENST00000595874 STAG1Q8WVM7 1258 aa12.17□□□□□ -0.46
SHKBP1-210ENST00000595874 TINF2Q9BSI4 451 aa12.17□□□□□ -0.46
SHKBP1-210ENST00000595874 PRDM5Q9NQX1 630 aaPredicted RBP12.17□□□□□ -0.46
SHKBP1-210ENST00000595874 RNF146Q9NTX7 359 aa12.17□□□□□ -0.46
SHKBP1-210ENST00000595874 ANAPC4Q9UJX5 808 aa12.17□□□□□ -0.46
SHKBP1-210ENST00000595874 PRR12Q9ULL5 1215 aa12.17□□□□□ -0.46
SHKBP1-210ENST00000595874 B4E1Z4 1266 aa12.16□□□□□ -0.46
SHKBP1-210ENST00000595874 SOX1O00570 391 aaPredicted RBP12.16□□□□□ -0.46
SHKBP1-210ENST00000595874 ZNF213O14771 459 aa12.16□□□□□ -0.46
SHKBP1-210ENST00000595874 SEPT4O43236 478 aa12.16□□□□□ -0.46
SHKBP1-210ENST00000595874 ORC4O43929 436 aa12.16□□□□□ -0.46
SHKBP1-210ENST00000595874 COL6A1P12109 1028 aa12.16□□□□□ -0.46
SHKBP1-210ENST00000595874 RTP1P59025 263 aa12.16□□□□□ -0.46
SHKBP1-210ENST00000595874 LRRC41Q15345 812 aa12.16□□□□□ -0.46
SHKBP1-210ENST00000595874 AKNAD1Q5T1N1 836 aa12.16□□□□□ -0.46
SHKBP1-210ENST00000595874 RCSD1Q6JBY9 416 aa12.16□□□□□ -0.46
SHKBP1-210ENST00000595874 NSMFQ6X4W1 530 aa12.16□□□□□ -0.46
SHKBP1-210ENST00000595874 MFSD6Q6ZSS7 791 aa12.16□□□□□ -0.46
SHKBP1-210ENST00000595874 EEPD1Q7L9B9 569 aa12.16□□□□□ -0.46
SHKBP1-210ENST00000595874 ABRAQ8N0Z2 381 aa12.16□□□□□ -0.46
SHKBP1-210ENST00000595874 LRCH3Q96II8 777 aa12.16□□□□□ -0.46
SHKBP1-210ENST00000595874 TRERF1Q96PN7 1200 aa12.16□□□□□ -0.46
SHKBP1-210ENST00000595874 XPNPEP3Q9NQH7 507 aa12.16□□□□□ -0.46
SHKBP1-210ENST00000595874 MCM3APO60318 1980 aa12.16□□□□□ -0.46
SHKBP1-210ENST00000595874 ZNF536O15090 1300 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms